Wall clock time and date at job start Tue Mar 31 2020 23:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.99453 * 2 1 4 4 C 1.54309 * 109.77309 * 121.15927 * 2 1 3 5 5 H 1.08998 * 111.08195 * 23.39839 * 4 2 1 6 6 C 1.53006 * 110.59092 * 260.14544 * 4 2 1 7 7 O 1.42893 * 109.47398 * 180.19778 * 6 4 2 8 8 C 1.55163 * 102.86306 * 141.88717 * 4 2 1 9 9 C 1.54902 * 101.57829 * 324.30122 * 8 4 2 10 10 N 1.47022 * 109.88078 * 238.90834 * 2 1 3 11 11 S 1.65602 * 125.64947 * 61.67732 * 10 2 1 12 12 O 1.42106 * 104.27342 * 153.64222 * 11 10 2 13 13 O 1.42098 * 104.27727 * 25.79079 * 11 10 2 14 14 C 1.81398 * 104.44804 * 269.71392 * 11 10 2 15 15 C 1.50704 * 109.46910 * 180.02562 * 14 11 10 16 16 C 1.38636 * 119.74581 * 269.73035 * 15 14 11 17 17 C 1.37628 * 120.24272 * 179.76383 * 16 15 14 18 18 C 1.40713 * 119.74523 * 0.52581 * 17 16 15 19 19 C 1.41395 * 120.24403 * 179.74493 * 18 17 16 20 20 H 1.08005 * 120.00076 * 330.21897 * 19 18 17 21 21 C 1.39945 * 119.99731 * 150.21613 * 19 18 17 22 22 N 1.30826 * 119.99485 * 161.72464 * 21 19 18 23 23 Si 1.86790 * 120.00324 * 341.72263 * 21 19 18 24 24 H 1.48502 * 109.47192 * 95.41183 * 23 21 19 25 25 H 1.48503 * 109.47036 * 215.41285 * 23 21 19 26 26 H 1.48504 * 109.47060 * 335.41298 * 23 21 19 27 27 C 1.40714 * 119.51100 * 359.72926 * 18 17 16 28 28 C 1.37621 * 119.74928 * 359.97438 * 27 18 17 29 29 H 1.09000 * 109.47415 * 179.64013 * 1 2 3 30 30 H 1.08998 * 109.47568 * 299.63838 * 1 2 3 31 31 H 1.08998 * 109.47491 * 59.64249 * 1 2 3 32 32 H 1.09004 * 109.46549 * 300.19438 * 6 4 2 33 33 H 1.09001 * 109.46892 * 60.19321 * 6 4 2 34 34 H 0.96698 * 114.00399 * 180.02562 * 7 6 4 35 35 H 1.08997 * 111.00107 * 206.22367 * 8 4 2 36 36 H 1.09003 * 111.03413 * 82.38982 * 8 4 2 37 37 H 1.09004 * 110.36629 * 278.16978 * 9 8 4 38 38 H 1.09007 * 110.45911 * 155.89800 * 9 8 4 39 39 H 1.08998 * 109.47104 * 300.00032 * 14 11 10 40 40 H 1.09001 * 109.46715 * 60.00311 * 14 11 10 41 41 H 1.07991 * 119.88158 * 359.97438 * 16 15 14 42 42 H 1.08000 * 120.12393 * 180.23185 * 17 16 15 43 43 H 0.97006 * 119.99980 * 180.02562 * 22 21 19 44 44 H 1.08004 * 120.12660 * 180.02562 * 27 18 17 45 45 H 1.07995 * 119.87943 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0520 -0.7514 1.2426 5 1 1.3063 -1.4513 1.6196 6 6 2.4647 0.2371 2.3352 7 8 2.9478 -0.4827 3.4711 8 6 3.2889 -1.5102 0.6931 9 6 2.8191 -1.8762 -0.7368 10 7 2.0299 -0.7140 -1.1840 11 16 1.7578 -0.2804 -2.7589 12 8 2.8682 -0.8150 -3.4664 13 8 1.5311 1.1212 -2.7023 14 6 0.2339 -1.1540 -3.2119 15 6 -0.1213 -0.8360 -4.6416 16 6 -0.9386 0.2481 -4.9224 17 6 -1.2655 0.5508 -6.2246 18 6 -0.7759 -0.2515 -7.2718 19 6 -1.1096 0.0466 -8.6131 20 1 -2.0509 0.5241 -8.8421 21 6 -0.2201 -0.2770 -9.6439 22 7 -0.6460 -0.3413 -10.8792 23 14 1.5752 -0.6169 -9.2561 24 1 1.7816 -2.0802 -9.1099 25 1 2.4258 -0.1049 -10.3605 26 1 1.9455 0.0642 -7.9894 27 6 0.0484 -1.3524 -6.9744 28 6 0.3674 -1.6327 -5.6654 29 1 -0.3634 -1.0276 -0.0065 30 1 -0.3634 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 3.2519 0.8892 1.9565 33 1 1.6031 0.8384 2.6255 34 1 3.2276 0.0818 4.2046 35 1 3.4897 -2.4065 1.2799 36 1 4.1642 -0.8613 0.6628 37 1 2.1971 -2.7711 -0.7143 38 1 3.6766 -2.0275 -1.3926 39 1 0.3857 -2.2282 -3.1060 40 1 -0.5763 -0.8351 -2.5563 41 1 -1.3173 0.8594 -4.1167 42 1 -1.8993 1.3979 -6.4414 43 1 -0.0296 -0.5660 -11.5937 44 1 0.4300 -1.9746 -7.7705 45 1 1.0003 -2.4769 -5.4348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413361519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:39 Heat of formation + Delta-G solvation = -109.946347 kcal Electronic energy + Delta-G solvation = -27692.258913 eV Core-core repulsion = 23801.041616 eV Total energy + Delta-G solvation = -3891.217297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.47217 -38.08447 -36.80152 -36.75899 -35.55279 -34.10786 -32.05210 -31.82365 -31.51679 -29.85508 -28.18612 -27.28251 -24.30327 -23.94491 -22.17024 -21.67654 -20.71404 -20.27098 -18.71643 -17.69179 -17.57698 -17.41415 -16.59161 -16.03852 -15.69929 -15.39810 -15.02519 -14.54185 -14.22913 -14.06623 -13.93159 -13.83140 -13.67043 -13.32633 -13.02655 -12.88674 -12.46387 -12.36581 -12.22731 -12.16688 -11.92080 -11.74587 -11.67959 -11.65534 -11.43497 -11.28967 -11.11223 -11.07219 -10.92972 -10.88720 -10.54408 -10.31023 -10.19950 -10.02683 -9.68471 -9.24553 -9.06179 -7.87471 -7.64565 -7.11077 -4.62807 0.44918 2.42285 2.58942 2.86640 3.06874 3.17680 3.29905 3.68587 3.91183 4.11678 4.19565 4.30018 4.36233 4.46822 4.68722 4.90113 4.97164 5.02929 5.08540 5.09002 5.12480 5.16494 5.27193 5.31475 5.40222 5.48613 5.64600 5.73931 5.75614 5.87304 5.93658 5.94637 5.99151 6.02179 6.12320 6.38569 6.45395 6.68563 6.72963 7.00819 7.22091 7.26749 7.39796 7.57022 7.72241 7.96163 8.18929 8.49023 8.63551 9.89491 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028985 B = 0.002801 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.786223 B = 9993.812591 C =10463.219173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.155 3.845 3 H 0.081 0.919 4 C -0.094 4.094 5 H 0.093 0.907 6 C 0.084 3.916 7 O -0.572 6.572 8 C -0.117 4.117 9 C 0.112 3.888 10 N -1.015 6.015 11 S 2.589 3.411 12 O -0.958 6.958 13 O -0.956 6.956 14 C -0.524 4.524 15 C -0.240 4.240 16 C -0.061 4.061 17 C -0.207 4.207 18 C 0.097 3.903 19 C -0.431 4.431 20 H 0.095 0.905 21 C 0.083 3.917 22 N -0.795 5.795 23 Si 0.907 3.093 24 H -0.266 1.266 25 H -0.287 1.287 26 H -0.240 1.240 27 C -0.239 4.239 28 C -0.054 4.054 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.380 0.620 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.289 0.711 44 H 0.106 0.894 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.977 -1.894 23.466 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.049 3.951 3 H 0.099 0.901 4 C -0.114 4.114 5 H 0.112 0.888 6 C 0.006 3.994 7 O -0.378 6.378 8 C -0.156 4.156 9 C -0.013 4.013 10 N -0.851 5.851 11 S 2.691 3.309 12 O -0.949 6.949 13 O -0.947 6.947 14 C -0.654 4.654 15 C -0.245 4.245 16 C -0.080 4.080 17 C -0.227 4.227 18 C 0.093 3.907 19 C -0.459 4.459 20 H 0.113 0.887 21 C -0.138 4.138 22 N -0.418 5.418 23 Si 0.733 3.267 24 H -0.192 1.192 25 H -0.214 1.214 26 H -0.163 1.163 27 C -0.258 4.258 28 C -0.073 4.073 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.227 0.773 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.123 0.877 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.428 -1.809 22.262 22.986 hybrid contribution 0.257 -0.140 0.437 0.526 sum 5.685 -1.949 22.699 23.481 Atomic orbital electron populations 1.22438 0.95057 1.02973 1.03439 1.21119 0.93764 0.96151 0.84072 0.90083 1.22262 0.98609 0.97473 0.93058 0.88829 1.22161 0.97715 0.93313 0.86214 1.86457 1.86093 1.37962 1.27243 1.22748 0.97278 1.00945 0.94612 1.22043 0.95308 0.87963 0.96021 1.59091 1.65463 1.38603 1.21977 1.06327 0.77733 0.75563 0.71296 1.93528 1.49510 1.81007 1.70817 1.93521 1.87089 1.29216 1.84866 1.29081 1.19174 1.12842 1.04353 1.18118 1.12767 1.04175 0.89412 1.20567 0.95982 0.95087 0.96409 1.21019 1.08117 1.01614 0.91970 1.17830 0.89542 0.89573 0.93714 1.19638 1.04813 1.32544 0.88927 0.88687 1.26243 1.02276 0.90860 0.94380 1.69686 1.38198 1.32529 1.01349 0.86358 0.80601 0.79930 0.79839 1.19201 1.21366 1.16291 1.21037 1.08547 1.01118 0.95118 1.20546 0.96830 0.97047 0.92926 0.91434 0.90771 0.91646 0.93198 0.93225 0.77343 0.89770 0.90685 0.91663 0.89780 0.85949 0.85845 0.88106 0.87507 0.90049 0.87652 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.76 37.16 0.33 -1.32 16 2 C 0.16 1.61 2.94 -66.96 -0.20 1.41 16 3 H 0.08 0.88 7.82 -51.93 -0.41 0.47 16 4 C -0.09 -0.78 2.76 -88.79 -0.24 -1.03 16 5 H 0.09 0.74 7.86 -51.93 -0.41 0.33 16 6 C 0.08 0.59 6.32 37.16 0.24 0.82 16 7 O -0.57 -4.07 13.50 -35.23 -0.48 -4.55 16 8 C -0.12 -1.02 6.38 -24.58 -0.16 -1.18 16 9 C 0.11 1.17 7.07 -2.53 -0.02 1.15 16 10 N -1.02 -12.79 3.32 -104.43 -0.35 -13.14 16 11 S 2.59 44.07 5.23 -107.50 -0.56 43.50 16 12 O -0.96 -19.35 17.28 -57.54 -0.99 -20.35 16 13 O -0.96 -18.76 17.48 -57.54 -1.01 -19.76 16 14 C -0.52 -8.19 6.30 36.01 0.23 -7.96 16 15 C -0.24 -4.91 5.16 -104.33 -0.54 -5.45 16 16 C -0.06 -1.29 9.67 -39.66 -0.38 -1.67 16 17 C -0.21 -4.80 9.80 -38.87 -0.38 -5.18 16 18 C 0.10 2.45 5.10 -106.83 -0.55 1.91 16 19 C -0.43 -11.40 9.57 -37.74 -0.36 -11.76 16 20 H 0.10 2.59 8.06 -52.48 -0.42 2.16 16 21 C 0.08 2.15 5.40 -17.34 -0.09 2.06 16 22 N -0.79 -20.60 13.93 55.55 0.77 -19.82 16 23 Si 0.91 20.90 24.52 -169.99 -4.17 16.74 16 24 H -0.27 -5.90 6.71 56.52 0.38 -5.52 16 25 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.24 -5.82 6.86 56.52 0.39 -5.43 16 27 C -0.24 -5.78 7.18 -38.87 -0.28 -6.06 16 28 C -0.05 -1.19 9.67 -39.66 -0.38 -1.57 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.68 7.09 -51.93 -0.37 0.31 16 32 H 0.05 0.34 8.11 -51.93 -0.42 -0.08 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.38 1.05 9.12 45.56 0.42 1.47 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.67 8.02 -51.93 -0.42 0.25 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.94 7.66 -51.92 -0.40 0.54 16 39 H 0.12 1.61 8.08 -51.92 -0.42 1.19 16 40 H 0.12 1.60 6.86 -51.92 -0.36 1.24 16 41 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 43 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 44 H 0.11 2.51 4.73 -52.48 -0.25 2.26 16 45 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -32.69 374.60 -9.93 -42.62 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.00 Total: 4.95 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: -2.79 Total: -35.84 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.43 Total: -32.96 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -2.48 Total: -44.66 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.17 Total: 16.74 kcal Atomic # 16 Polarization: 44.07 SS G_CDS: -0.56 Total: 43.50 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.69 -9.93 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413361519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.330 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds