Wall clock time and date at job start Tue Mar 31 2020 23:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.99453 * 2 1 4 4 C 1.54309 * 109.77309 * 121.15927 * 2 1 3 5 5 H 1.08998 * 111.08195 * 23.39839 * 4 2 1 6 6 C 1.53006 * 110.59092 * 260.14544 * 4 2 1 7 7 O 1.42893 * 109.47398 * 180.19778 * 6 4 2 8 8 C 1.55163 * 102.86306 * 141.88717 * 4 2 1 9 9 C 1.54902 * 101.57829 * 324.30122 * 8 4 2 10 10 N 1.47022 * 109.88078 * 238.90834 * 2 1 3 11 11 S 1.65602 * 125.64947 * 61.67732 * 10 2 1 12 12 O 1.42106 * 104.27342 * 153.64222 * 11 10 2 13 13 O 1.42098 * 104.27727 * 25.79079 * 11 10 2 14 14 C 1.81398 * 104.44804 * 269.71392 * 11 10 2 15 15 C 1.50704 * 109.46910 * 180.02562 * 14 11 10 16 16 C 1.38636 * 119.74581 * 269.73035 * 15 14 11 17 17 C 1.37628 * 120.24272 * 179.76383 * 16 15 14 18 18 C 1.40713 * 119.74523 * 0.52581 * 17 16 15 19 19 C 1.41395 * 120.24403 * 179.74493 * 18 17 16 20 20 H 1.08005 * 120.00076 * 330.21897 * 19 18 17 21 21 C 1.39945 * 119.99731 * 150.21613 * 19 18 17 22 22 N 1.30826 * 119.99485 * 161.72464 * 21 19 18 23 23 Si 1.86790 * 120.00324 * 341.72263 * 21 19 18 24 24 H 1.48502 * 109.47192 * 95.41183 * 23 21 19 25 25 H 1.48503 * 109.47036 * 215.41285 * 23 21 19 26 26 H 1.48504 * 109.47060 * 335.41298 * 23 21 19 27 27 C 1.40714 * 119.51100 * 359.72926 * 18 17 16 28 28 C 1.37621 * 119.74928 * 359.97438 * 27 18 17 29 29 H 1.09000 * 109.47415 * 179.64013 * 1 2 3 30 30 H 1.08998 * 109.47568 * 299.63838 * 1 2 3 31 31 H 1.08998 * 109.47491 * 59.64249 * 1 2 3 32 32 H 1.09004 * 109.46549 * 300.19438 * 6 4 2 33 33 H 1.09001 * 109.46892 * 60.19321 * 6 4 2 34 34 H 0.96698 * 114.00399 * 180.02562 * 7 6 4 35 35 H 1.08997 * 111.00107 * 206.22367 * 8 4 2 36 36 H 1.09003 * 111.03413 * 82.38982 * 8 4 2 37 37 H 1.09004 * 110.36629 * 278.16978 * 9 8 4 38 38 H 1.09007 * 110.45911 * 155.89800 * 9 8 4 39 39 H 1.08998 * 109.47104 * 300.00032 * 14 11 10 40 40 H 1.09001 * 109.46715 * 60.00311 * 14 11 10 41 41 H 1.07991 * 119.88158 * 359.97438 * 16 15 14 42 42 H 1.08000 * 120.12393 * 180.23185 * 17 16 15 43 43 H 0.97006 * 119.99980 * 180.02562 * 22 21 19 44 44 H 1.08004 * 120.12660 * 180.02562 * 27 18 17 45 45 H 1.07995 * 119.87943 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0520 -0.7514 1.2426 5 1 1.3063 -1.4513 1.6196 6 6 2.4647 0.2371 2.3352 7 8 2.9478 -0.4827 3.4711 8 6 3.2889 -1.5102 0.6931 9 6 2.8191 -1.8762 -0.7368 10 7 2.0299 -0.7140 -1.1840 11 16 1.7578 -0.2804 -2.7589 12 8 2.8682 -0.8150 -3.4664 13 8 1.5311 1.1212 -2.7023 14 6 0.2339 -1.1540 -3.2119 15 6 -0.1213 -0.8360 -4.6416 16 6 -0.9386 0.2481 -4.9224 17 6 -1.2655 0.5508 -6.2246 18 6 -0.7759 -0.2515 -7.2718 19 6 -1.1096 0.0466 -8.6131 20 1 -2.0509 0.5241 -8.8421 21 6 -0.2201 -0.2770 -9.6439 22 7 -0.6460 -0.3413 -10.8792 23 14 1.5752 -0.6169 -9.2561 24 1 1.7816 -2.0802 -9.1099 25 1 2.4258 -0.1049 -10.3605 26 1 1.9455 0.0642 -7.9894 27 6 0.0484 -1.3524 -6.9744 28 6 0.3674 -1.6327 -5.6654 29 1 -0.3634 -1.0276 -0.0065 30 1 -0.3634 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 3.2519 0.8892 1.9565 33 1 1.6031 0.8384 2.6255 34 1 3.2276 0.0818 4.2046 35 1 3.4897 -2.4065 1.2799 36 1 4.1642 -0.8613 0.6628 37 1 2.1971 -2.7711 -0.7143 38 1 3.6766 -2.0275 -1.3926 39 1 0.3857 -2.2282 -3.1060 40 1 -0.5763 -0.8351 -2.5563 41 1 -1.3173 0.8594 -4.1167 42 1 -1.8993 1.3979 -6.4414 43 1 -0.0296 -0.5660 -11.5937 44 1 0.4300 -1.9746 -7.7705 45 1 1.0003 -2.4769 -5.4348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413361519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:38 Heat of formation + Delta-G solvation = -134.714391 kcal Electronic energy + Delta-G solvation = -27693.332936 eV Core-core repulsion = 23801.041616 eV Total energy + Delta-G solvation = -3892.291320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.20962 -39.85471 -38.21784 -37.33259 -36.99918 -35.92964 -33.74215 -32.60724 -32.27960 -31.63366 -29.83455 -27.96707 -25.84944 -24.79951 -23.51749 -23.01838 -22.08777 -21.31927 -19.86268 -19.46685 -18.66348 -18.14883 -17.86482 -17.33329 -17.16791 -16.53394 -16.20171 -15.83403 -15.69695 -15.60849 -14.94664 -14.80068 -14.61849 -14.50557 -14.22763 -14.12574 -13.97089 -13.75745 -13.43728 -13.36021 -13.21201 -13.14572 -12.98175 -12.97158 -12.72170 -12.69080 -12.44201 -12.28848 -11.89786 -11.81482 -11.77104 -11.71161 -11.56125 -11.52658 -11.06773 -10.79074 -10.04729 -9.65426 -9.41689 -9.01129 -6.58731 -0.87699 0.64788 0.76899 1.21220 1.33897 1.42931 1.70419 2.05278 2.46021 2.85236 2.97010 3.26965 3.39376 3.51455 3.70033 3.72555 3.92721 4.10122 4.20943 4.27312 4.31567 4.37393 4.39854 4.46106 4.54678 4.57249 4.66531 4.70608 4.73306 4.77091 4.90339 4.94901 4.99658 5.03889 5.11740 5.19222 5.20118 5.31031 5.39374 5.47659 5.52408 5.60220 5.78117 5.82887 6.13197 6.28253 6.61313 6.72285 6.94530 8.06324 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028985 B = 0.002801 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.786223 B = 9993.812591 C =10463.219173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.147 3.853 3 H 0.071 0.929 4 C -0.087 4.087 5 H 0.105 0.895 6 C 0.084 3.916 7 O -0.587 6.587 8 C -0.113 4.113 9 C 0.103 3.897 10 N -1.011 6.011 11 S 2.603 3.397 12 O -0.995 6.995 13 O -0.988 6.988 14 C -0.525 4.525 15 C -0.225 4.225 16 C -0.067 4.067 17 C -0.222 4.222 18 C 0.078 3.922 19 C -0.473 4.473 20 H 0.067 0.933 21 C 0.055 3.945 22 N -0.834 5.834 23 Si 0.950 3.050 24 H -0.252 1.252 25 H -0.270 1.270 26 H -0.262 1.262 27 C -0.255 4.255 28 C -0.068 4.068 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.135 0.865 42 H 0.112 0.888 43 H 0.297 0.703 44 H 0.103 0.897 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 -3.190 27.760 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.042 3.958 3 H 0.089 0.911 4 C -0.107 4.107 5 H 0.124 0.876 6 C 0.006 3.994 7 O -0.396 6.396 8 C -0.152 4.152 9 C -0.022 4.022 10 N -0.850 5.850 11 S 2.705 3.295 12 O -0.986 6.986 13 O -0.979 6.979 14 C -0.656 4.656 15 C -0.229 4.229 16 C -0.086 4.086 17 C -0.242 4.242 18 C 0.074 3.926 19 C -0.502 4.502 20 H 0.085 0.915 21 C -0.162 4.162 22 N -0.459 5.459 23 Si 0.773 3.227 24 H -0.177 1.177 25 H -0.197 1.197 26 H -0.186 1.186 27 C -0.274 4.274 28 C -0.088 4.088 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.247 0.753 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.175 0.825 40 H 0.177 0.823 41 H 0.153 0.847 42 H 0.131 0.869 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.081 -3.095 26.528 27.391 hybrid contribution 0.078 0.250 -0.431 0.505 sum 6.159 -2.845 26.096 26.964 Atomic orbital electron populations 1.22504 0.93800 1.04123 1.03887 1.21353 0.94887 0.95746 0.83855 0.91083 1.22233 0.98461 0.97586 0.92448 0.87638 1.22129 0.98302 0.92923 0.86026 1.86397 1.86237 1.39039 1.27896 1.22745 0.97265 1.01565 0.93671 1.22324 0.95237 0.87999 0.96624 1.58650 1.65708 1.39668 1.20957 1.05280 0.77380 0.74728 0.72065 1.93491 1.51121 1.81382 1.72575 1.93488 1.87434 1.31190 1.85753 1.29167 1.19695 1.15221 1.01563 1.18639 1.10012 1.02381 0.91837 1.21004 0.95604 0.95586 0.96389 1.21275 1.08327 1.01798 0.92781 1.18011 0.90463 0.90423 0.93669 1.19571 1.04860 1.35447 0.90353 0.91519 1.26715 1.04570 0.90723 0.94171 1.69695 1.39350 1.34886 1.01967 0.85720 0.77672 0.80365 0.78931 1.17676 1.19656 1.18611 1.21192 1.08840 1.00991 0.96418 1.20969 0.97146 0.98285 0.92353 0.89862 0.88597 0.93093 0.93439 0.91752 0.75253 0.88260 0.91385 0.89057 0.91062 0.82469 0.82327 0.84743 0.86949 0.89188 0.87897 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 8.76 71.98 0.63 -1.95 16 2 C 0.15 2.55 2.94 45.34 0.13 2.68 16 3 H 0.07 1.37 7.82 -2.39 -0.02 1.35 16 4 C -0.09 -1.12 2.76 -9.61 -0.03 -1.15 16 5 H 0.11 1.15 7.86 -2.39 -0.02 1.13 16 6 C 0.08 0.89 6.32 71.98 0.46 1.35 16 7 O -0.59 -6.40 13.50 -148.98 -2.01 -8.41 16 8 C -0.11 -1.61 6.38 31.99 0.20 -1.41 16 9 C 0.10 1.80 7.07 86.85 0.61 2.41 16 10 N -1.01 -22.30 3.32 -484.30 -1.61 -23.91 16 11 S 2.60 81.89 5.23 -56.49 -0.30 81.59 16 12 O -1.00 -38.53 17.28 -127.65 -2.21 -40.73 16 13 O -0.99 -37.02 17.48 -127.65 -2.23 -39.25 16 14 C -0.53 -14.13 6.30 71.24 0.45 -13.68 16 15 C -0.22 -8.58 5.16 -19.67 -0.10 -8.68 16 16 C -0.07 -2.68 9.67 22.22 0.21 -2.47 16 17 C -0.22 -10.37 9.80 22.73 0.22 -10.15 16 18 C 0.08 4.02 5.10 -21.29 -0.11 3.91 16 19 C -0.47 -26.53 9.57 23.46 0.22 -26.31 16 20 H 0.07 3.95 8.06 -2.91 -0.02 3.92 16 21 C 0.06 2.97 5.40 85.26 0.46 3.43 16 22 N -0.83 -45.23 13.93 21.83 0.30 -44.93 16 23 Si 0.95 43.92 24.52 68.60 1.68 45.60 16 24 H -0.25 -10.90 6.71 99.48 0.67 -10.23 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 H -0.26 -12.89 6.86 99.48 0.68 -12.20 16 27 C -0.26 -12.38 7.18 22.73 0.16 -12.21 16 28 C -0.07 -2.87 9.67 22.22 0.21 -2.66 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.87 7.09 -2.39 -0.02 0.85 16 32 H 0.05 0.52 8.11 -2.38 -0.02 0.50 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.40 1.00 9.12 -74.06 -0.68 0.32 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.06 8.02 -2.39 -0.02 1.04 16 37 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.07 1.44 7.66 -2.38 -0.02 1.42 16 39 H 0.16 3.24 8.08 -2.39 -0.02 3.22 16 40 H 0.16 3.24 6.86 -2.39 -0.02 3.22 16 41 H 0.13 4.45 8.06 -2.92 -0.02 4.42 16 42 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 43 H 0.30 14.45 8.30 -92.70 -0.77 13.68 16 44 H 0.10 4.94 4.73 -2.91 -0.01 4.93 16 45 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -73.83 374.60 -2.36 -76.19 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.26 Total: 20.73 kcal Atomic # 6 Polarization: -70.63 SS G_CDS: 3.75 Total: -66.88 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -1.31 Total: -68.84 kcal Atomic # 8 Polarization: -81.94 SS G_CDS: -6.45 Total: -88.39 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.68 Total: 45.60 kcal Atomic # 16 Polarization: 81.89 SS G_CDS: -0.30 Total: 81.59 kcal Total: -73.83 -2.36 -76.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413361519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.524 kcal (2) G-P(sol) polarization free energy of solvation -73.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds