Wall clock time and date at job start Tue Mar 31 2020 23:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47005 * 2 1 4 4 N 1.46501 * 109.47010 * 119.99732 * 2 1 3 5 5 C 1.46496 * 120.00143 * 299.99871 * 4 2 1 6 6 C 1.50702 * 109.47420 * 274.99943 * 5 4 2 7 7 H 1.07999 * 119.99889 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00176 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00098 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 119.99880 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46717 * 89.99960 * 10 8 6 12 12 H 1.48499 * 109.47056 * 209.99346 * 10 8 6 13 13 H 1.48499 * 109.47252 * 330.00286 * 10 8 6 14 14 S 1.65608 * 119.99904 * 120.00336 * 4 2 1 15 15 O 1.42099 * 106.40241 * 23.53644 * 14 4 2 16 16 O 1.42097 * 106.39895 * 156.45719 * 14 4 2 17 17 C 1.76196 * 107.21621 * 269.99900 * 14 4 2 18 18 C 1.37972 * 119.88158 * 114.99817 * 17 14 4 19 19 C 1.38250 * 120.34992 * 180.02562 * 18 17 14 20 20 C 1.38396 * 119.76585 * 0.20530 * 19 18 17 21 21 C 1.37691 * 119.98270 * 359.93362 * 20 19 18 22 22 C 1.38931 * 120.78047 * 359.41181 * 21 20 19 23 23 O 1.36127 * 111.22722 * 180.83734 * 22 21 20 24 24 C 1.43781 * 109.29800 * 341.24224 * 23 22 21 25 25 H 1.08997 * 110.74362 * 269.25599 * 24 23 22 26 26 C 1.52999 * 110.74737 * 145.90288 * 24 23 22 27 27 C 1.51640 * 132.18205 * 179.41814 * 21 20 19 28 28 H 1.08999 * 109.46880 * 299.99727 * 1 2 3 29 29 H 1.08996 * 109.47062 * 60.00591 * 1 2 3 30 30 H 1.09000 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47249 * 239.99591 * 2 1 3 32 32 H 1.09001 * 109.46934 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46728 * 299.99613 * 3 2 1 34 34 H 1.08998 * 109.47451 * 59.99715 * 3 2 1 35 35 H 1.08999 * 109.47129 * 35.00313 * 5 4 2 36 36 H 1.09006 * 109.47348 * 155.00378 * 5 4 2 37 37 H 0.97000 * 119.99533 * 179.97438 * 9 8 6 38 38 H 1.07990 * 119.82850 * 0.06324 * 18 17 14 39 39 H 1.08002 * 120.11678 * 180.18724 * 19 18 17 40 40 H 1.08002 * 120.00543 * 179.97438 * 20 19 18 41 41 H 1.08995 * 109.47392 * 306.63236 * 26 24 23 42 42 H 1.09002 * 109.46804 * 66.62792 * 26 24 23 43 43 H 1.08993 * 109.47008 * 186.62870 * 26 24 23 44 44 H 1.08994 * 110.93704 * 313.65823 * 27 21 20 45 45 H 1.09000 * 110.94224 * 77.34374 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.6338 0.8906 2.9312 7 1 3.4333 1.1763 2.2637 8 6 2.4994 1.5153 4.1530 9 7 3.3451 2.4587 4.5057 10 14 1.1161 1.0217 5.3072 11 1 1.5808 -0.0726 6.1971 12 1 0.7160 2.1919 6.1293 13 1 -0.0479 0.5532 4.5130 14 16 2.9705 -2.0370 1.0443 15 8 3.5795 -1.9553 -0.2370 16 8 3.7118 -2.1424 2.2520 17 6 1.8962 -3.4328 0.9965 18 6 1.8194 -4.2023 -0.1461 19 6 0.9794 -5.2992 -0.1945 20 6 0.2087 -5.6235 0.9084 21 6 0.2815 -4.8553 2.0487 22 6 1.1319 -3.7586 2.1140 23 8 1.0627 -3.1531 3.3312 24 6 -0.1513 -3.5504 3.9913 25 1 -0.9614 -2.8595 3.7581 26 6 0.0611 -3.6488 5.5033 27 6 -0.4297 -4.9462 3.3849 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9562 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 0.6539 0.2181 2.5045 36 1 1.7105 -1.0073 3.2466 37 1 3.2503 2.8984 5.3651 38 1 2.4192 -3.9468 -1.0071 39 1 0.9245 -5.9008 -1.0898 40 1 -0.4492 -6.4794 0.8747 41 1 0.9122 -4.2979 5.7092 42 1 0.2553 -2.6557 5.9083 43 1 -0.8328 -4.0629 5.9695 44 1 -1.4992 -5.1045 3.2468 45 1 0.0024 -5.7328 4.0035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434553490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:18 Heat of formation + Delta-G solvation = -73.560361 kcal Electronic energy + Delta-G solvation = -29765.614585 eV Core-core repulsion = 25875.975103 eV Total energy + Delta-G solvation = -3889.639482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.30669 -37.69081 -36.95699 -36.49675 -35.12333 -33.39142 -32.60417 -31.26121 -30.78907 -30.31999 -27.38305 -26.74952 -26.58446 -23.09931 -22.34990 -22.12702 -21.82395 -20.25606 -18.26971 -17.69907 -17.46862 -16.97585 -16.57357 -16.42259 -15.66302 -15.19568 -15.03997 -14.24232 -14.14098 -13.73098 -13.57272 -13.43204 -13.37901 -13.06025 -12.93698 -12.71754 -12.58394 -12.33538 -12.17991 -12.01341 -11.81274 -11.77793 -11.55944 -11.39360 -11.26834 -11.18693 -11.03951 -10.89960 -10.86342 -10.79813 -10.38646 -10.32795 -10.12871 -9.95545 -9.37007 -9.30505 -8.49830 -8.32463 -8.01877 -5.99761 -3.95831 0.75302 1.08664 1.20039 3.02343 3.28933 3.32380 3.35036 3.36898 3.71230 4.17777 4.30337 4.36031 4.45050 4.63798 4.78517 4.94015 4.97096 5.03306 5.18099 5.25559 5.31614 5.36508 5.38136 5.46154 5.62613 5.64214 5.66208 5.70839 5.86560 5.91132 6.03138 6.03812 6.06638 6.19291 6.20941 6.27880 6.45056 6.47142 6.57419 6.77162 6.96533 7.01072 7.16306 7.31545 7.54382 7.69273 8.58904 9.06891 9.60277 11.13710 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.006698 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.396248 B = 4179.233472 C = 5686.922887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 C -0.152 4.152 4 N -0.969 5.969 5 C 0.222 3.778 6 C -0.519 4.519 7 H 0.082 0.918 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.865 3.135 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.265 1.265 14 S 2.685 3.315 15 O -0.975 6.975 16 O -0.932 6.932 17 C -0.695 4.695 18 C 0.005 3.995 19 C -0.174 4.174 20 C -0.025 4.025 21 C -0.201 4.201 22 C 0.211 3.789 23 O -0.278 6.278 24 C 0.071 3.929 25 H 0.093 0.907 26 C -0.153 4.153 27 C -0.102 4.102 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.148 0.852 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.031 -15.348 -6.386 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 C -0.211 4.211 4 N -0.809 5.809 5 C 0.099 3.901 6 C -0.559 4.559 7 H 0.100 0.900 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.692 3.308 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.190 1.190 14 S 2.773 3.227 15 O -0.965 6.965 16 O -0.922 6.922 17 C -0.779 4.779 18 C -0.014 4.014 19 C -0.193 4.193 20 C -0.043 4.043 21 C -0.202 4.202 22 C 0.163 3.837 23 O -0.190 6.190 24 C 0.016 3.984 25 H 0.111 0.889 26 C -0.210 4.210 27 C -0.139 4.139 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.966 -15.113 -6.124 19.651 hybrid contribution -1.499 -0.687 0.795 1.831 sum -12.465 -15.800 -5.329 20.819 Atomic orbital electron populations 1.22170 0.96168 1.01311 1.02329 1.20715 0.93572 0.95013 0.86516 1.22120 1.01825 0.94958 1.02165 1.57299 1.70160 1.40219 1.13173 1.19562 0.96866 0.95942 0.77764 1.21434 1.13691 1.17761 1.02987 0.90016 1.24819 0.95837 0.94868 0.97386 1.69893 1.36621 1.25193 1.21920 0.87019 0.83345 0.78514 0.81934 1.19752 1.21294 1.19028 1.02271 0.74052 0.72842 0.73523 1.93487 1.73751 1.86803 1.42458 1.93628 1.66991 1.85812 1.45785 1.30531 1.23752 1.25877 0.97742 1.20759 0.94031 0.91701 0.94937 1.21105 0.99514 0.99484 0.99184 1.20494 0.96016 0.96838 0.90935 1.20855 1.03586 0.98621 0.97151 1.18869 0.91083 0.89285 0.84506 1.87123 1.40646 1.66213 1.25059 1.23556 0.85657 0.94759 0.94450 0.88876 1.21921 1.03090 1.04310 0.91725 1.21879 1.01455 0.98031 0.92584 0.91550 0.92151 0.93346 0.89788 0.92380 0.93494 0.89669 0.95072 0.93808 0.92741 0.83398 0.84797 0.85415 0.91007 0.90676 0.90175 0.88926 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.16 37.16 0.34 -2.06 16 2 C 0.15 2.65 3.24 -67.93 -0.22 2.43 16 3 C -0.15 -2.82 8.20 37.16 0.30 -2.52 16 4 N -0.97 -20.38 2.73 -108.57 -0.30 -20.67 16 5 C 0.22 5.26 3.74 -5.19 -0.02 5.24 16 6 C -0.52 -14.60 8.08 -34.44 -0.28 -14.88 16 7 H 0.08 2.50 7.32 -52.49 -0.38 2.12 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 10 Si 0.86 21.04 27.47 -169.99 -4.67 16.37 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 14 S 2.69 56.71 5.53 -107.50 -0.59 56.11 16 15 O -0.97 -20.58 15.51 -57.17 -0.89 -21.46 16 16 O -0.93 -23.52 16.87 -57.17 -0.96 -24.48 16 17 C -0.69 -12.10 5.93 -39.30 -0.23 -12.33 16 18 C 0.00 0.07 9.52 -39.67 -0.38 -0.31 16 19 C -0.17 -1.96 10.07 -39.52 -0.40 -2.36 16 20 C -0.02 -0.27 10.03 -39.72 -0.40 -0.67 16 21 C -0.20 -2.65 6.27 -104.10 -0.65 -3.30 16 22 C 0.21 3.58 6.69 -38.95 -0.26 3.31 16 23 O -0.28 -5.03 8.76 -20.15 -0.18 -5.20 16 24 C 0.07 0.93 4.26 -25.83 -0.11 0.82 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 26 C -0.15 -1.76 9.58 37.16 0.36 -1.41 16 27 C -0.10 -1.07 6.65 -26.52 -0.18 -1.24 16 28 H 0.07 1.06 6.69 -51.93 -0.35 0.71 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.38 6.91 -51.93 -0.36 1.02 16 32 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.78 6.65 -51.93 -0.35 1.43 16 35 H 0.03 0.71 5.51 -51.93 -0.29 0.42 16 36 H 0.04 1.08 4.98 -51.93 -0.26 0.82 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.15 1.89 7.30 -52.49 -0.38 1.51 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.86 7.92 -51.93 -0.41 0.45 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -35.30 369.26 -10.05 -45.36 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.58 Total: 2.44 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -2.22 Total: -27.27 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.48 Total: -47.42 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -2.03 Total: -51.15 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Atomic # 16 Polarization: 56.71 SS G_CDS: -0.59 Total: 56.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.30 -10.05 -45.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434553490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.204 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds