Wall clock time and date at job start Tue Mar 31 2020 23:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47005 * 2 1 4 4 N 1.46501 * 109.47010 * 119.99732 * 2 1 3 5 5 C 1.46496 * 120.00143 * 299.99871 * 4 2 1 6 6 C 1.50702 * 109.47420 * 274.99943 * 5 4 2 7 7 H 1.07999 * 119.99889 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00176 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00098 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 119.99880 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46717 * 89.99960 * 10 8 6 12 12 H 1.48499 * 109.47056 * 209.99346 * 10 8 6 13 13 H 1.48499 * 109.47252 * 330.00286 * 10 8 6 14 14 S 1.65608 * 119.99904 * 120.00336 * 4 2 1 15 15 O 1.42099 * 106.40241 * 23.53644 * 14 4 2 16 16 O 1.42097 * 106.39895 * 156.45719 * 14 4 2 17 17 C 1.76196 * 107.21621 * 269.99900 * 14 4 2 18 18 C 1.37972 * 119.88158 * 114.99817 * 17 14 4 19 19 C 1.38250 * 120.34992 * 180.02562 * 18 17 14 20 20 C 1.38396 * 119.76585 * 0.20530 * 19 18 17 21 21 C 1.37691 * 119.98270 * 359.93362 * 20 19 18 22 22 C 1.38931 * 120.78047 * 359.41181 * 21 20 19 23 23 O 1.36127 * 111.22722 * 180.83734 * 22 21 20 24 24 C 1.43781 * 109.29800 * 341.24224 * 23 22 21 25 25 H 1.08997 * 110.74362 * 269.25599 * 24 23 22 26 26 C 1.52999 * 110.74737 * 145.90288 * 24 23 22 27 27 C 1.51640 * 132.18205 * 179.41814 * 21 20 19 28 28 H 1.08999 * 109.46880 * 299.99727 * 1 2 3 29 29 H 1.08996 * 109.47062 * 60.00591 * 1 2 3 30 30 H 1.09000 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47249 * 239.99591 * 2 1 3 32 32 H 1.09001 * 109.46934 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46728 * 299.99613 * 3 2 1 34 34 H 1.08998 * 109.47451 * 59.99715 * 3 2 1 35 35 H 1.08999 * 109.47129 * 35.00313 * 5 4 2 36 36 H 1.09006 * 109.47348 * 155.00378 * 5 4 2 37 37 H 0.97000 * 119.99533 * 179.97438 * 9 8 6 38 38 H 1.07990 * 119.82850 * 0.06324 * 18 17 14 39 39 H 1.08002 * 120.11678 * 180.18724 * 19 18 17 40 40 H 1.08002 * 120.00543 * 179.97438 * 20 19 18 41 41 H 1.08995 * 109.47392 * 306.63236 * 26 24 23 42 42 H 1.09002 * 109.46804 * 66.62792 * 26 24 23 43 43 H 1.08993 * 109.47008 * 186.62870 * 26 24 23 44 44 H 1.08994 * 110.93704 * 313.65823 * 27 21 20 45 45 H 1.09000 * 110.94224 * 77.34374 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.6338 0.8906 2.9312 7 1 3.4333 1.1763 2.2637 8 6 2.4994 1.5153 4.1530 9 7 3.3451 2.4587 4.5057 10 14 1.1161 1.0217 5.3072 11 1 1.5808 -0.0726 6.1971 12 1 0.7160 2.1919 6.1293 13 1 -0.0479 0.5532 4.5130 14 16 2.9705 -2.0370 1.0443 15 8 3.5795 -1.9553 -0.2370 16 8 3.7118 -2.1424 2.2520 17 6 1.8962 -3.4328 0.9965 18 6 1.8194 -4.2023 -0.1461 19 6 0.9794 -5.2992 -0.1945 20 6 0.2087 -5.6235 0.9084 21 6 0.2815 -4.8553 2.0487 22 6 1.1319 -3.7586 2.1140 23 8 1.0627 -3.1531 3.3312 24 6 -0.1513 -3.5504 3.9913 25 1 -0.9614 -2.8595 3.7581 26 6 0.0611 -3.6488 5.5033 27 6 -0.4297 -4.9462 3.3849 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9562 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 0.6539 0.2181 2.5045 36 1 1.7105 -1.0073 3.2466 37 1 3.2503 2.8984 5.3651 38 1 2.4192 -3.9468 -1.0071 39 1 0.9245 -5.9008 -1.0898 40 1 -0.4492 -6.4794 0.8747 41 1 0.9122 -4.2979 5.7092 42 1 0.2553 -2.6557 5.9083 43 1 -0.8328 -4.0629 5.9695 44 1 -1.4992 -5.1045 3.2468 45 1 0.0024 -5.7328 4.0035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434553490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:16 Heat of formation + Delta-G solvation = -99.047604 kcal Electronic energy + Delta-G solvation = -29766.719795 eV Core-core repulsion = 25875.975103 eV Total energy + Delta-G solvation = -3890.744692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.32023 -38.75336 -38.55761 -38.16665 -36.87453 -34.72753 -34.34670 -32.49331 -32.20814 -31.33958 -29.35210 -27.95741 -27.62494 -24.34512 -24.18298 -23.12304 -22.76383 -21.76984 -19.76296 -19.04845 -19.01327 -18.65363 -18.10736 -17.60146 -17.08425 -16.50226 -16.27773 -15.94562 -15.52246 -15.12241 -14.96082 -14.67317 -14.49574 -14.42281 -14.24111 -13.92596 -13.75794 -13.64383 -13.53282 -13.31800 -13.14794 -13.09147 -13.06453 -12.99881 -12.76377 -12.69553 -12.60757 -12.40360 -12.15075 -12.12263 -11.88710 -11.84488 -11.62503 -11.56594 -11.35560 -10.72300 -10.36827 -9.75356 -9.31230 -8.23937 -6.25300 -0.59601 -0.20591 0.20821 1.31146 1.37232 1.44379 1.98229 2.08590 2.36655 2.46126 2.80016 3.09744 3.27228 3.37369 3.51605 3.83345 3.87753 3.97581 4.08470 4.14921 4.24989 4.26297 4.28875 4.37967 4.51991 4.63176 4.66423 4.72449 4.84417 4.87267 4.90202 4.93195 4.98948 5.00484 5.06213 5.11809 5.16159 5.17984 5.27244 5.27385 5.50134 5.56096 5.58661 5.66383 5.91049 6.00846 6.37734 6.75657 7.34456 8.93256 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.006698 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.396248 B = 4179.233472 C = 5686.922887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.137 3.863 3 C -0.148 4.148 4 N -0.977 5.977 5 C 0.237 3.763 6 C -0.522 4.522 7 H 0.035 0.965 8 C 0.007 3.993 9 N -0.949 5.949 10 Si 0.931 3.069 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.231 1.231 14 S 2.681 3.319 15 O -0.990 6.990 16 O -0.993 6.993 17 C -0.706 4.706 18 C -0.012 4.012 19 C -0.157 4.157 20 C -0.010 4.010 21 C -0.198 4.198 22 C 0.177 3.823 23 O -0.322 6.322 24 C 0.053 3.947 25 H 0.100 0.900 26 C -0.153 4.153 27 C -0.089 4.089 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.025 0.975 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.039 0.961 37 H 0.265 0.735 38 H 0.153 0.847 39 H 0.177 0.823 40 H 0.177 0.823 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.119 0.881 44 H 0.130 0.870 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.723 -19.149 -7.512 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.032 3.968 3 C -0.207 4.207 4 N -0.816 5.816 5 C 0.113 3.887 6 C -0.562 4.562 7 H 0.053 0.947 8 C -0.190 4.190 9 N -0.590 5.590 10 Si 0.753 3.247 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.154 1.154 14 S 2.777 3.223 15 O -0.981 6.981 16 O -0.983 6.983 17 C -0.797 4.797 18 C -0.031 4.031 19 C -0.176 4.176 20 C -0.027 4.027 21 C -0.200 4.200 22 C 0.129 3.871 23 O -0.235 6.235 24 C -0.001 4.001 25 H 0.118 0.882 26 C -0.209 4.209 27 C -0.126 4.126 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.044 0.956 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.171 0.829 39 H 0.194 0.806 40 H 0.194 0.806 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.138 0.862 44 H 0.148 0.852 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.629 -18.861 -7.284 25.555 hybrid contribution 0.019 0.400 1.011 1.087 sum -15.609 -18.460 -6.273 24.976 Atomic orbital electron populations 1.22096 0.93093 1.02548 1.03259 1.21043 0.96055 0.93870 0.85805 1.22068 0.99777 0.96262 1.02603 1.57196 1.70112 1.41289 1.12993 1.19209 0.96093 0.94183 0.79221 1.21693 1.13306 1.18769 1.02415 0.94650 1.25796 0.98979 0.94779 0.99409 1.70068 1.39222 1.26998 1.22731 0.85965 0.80820 0.78281 0.79615 1.19624 1.20500 1.15393 1.01715 0.74471 0.73859 0.72231 1.93443 1.74964 1.87424 1.42250 1.93546 1.69762 1.86942 1.48063 1.29778 1.24777 1.24946 1.00205 1.21005 0.95344 0.92792 0.93988 1.21609 0.97269 0.97866 1.00841 1.21097 0.95272 0.97038 0.89340 1.21298 1.02469 0.97243 0.99004 1.19193 0.92526 0.91202 0.84179 1.87076 1.42999 1.67497 1.25965 1.23952 0.84418 0.96856 0.94891 0.88197 1.21981 1.04729 1.02922 0.91309 1.21932 1.03455 0.96415 0.90776 0.92812 0.88921 0.91930 0.88388 0.95574 0.89562 0.92562 0.93332 0.94301 0.92661 0.82944 0.80573 0.80560 0.91714 0.93238 0.86210 0.85180 0.87427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.16 71.98 0.66 -3.55 16 2 C 0.14 4.95 3.24 44.99 0.15 5.09 16 3 C -0.15 -5.75 8.20 71.98 0.59 -5.16 16 4 N -0.98 -42.73 2.73 -497.42 -1.36 -44.08 16 5 C 0.24 11.67 3.74 85.63 0.32 12.00 16 6 C -0.52 -31.31 8.08 25.60 0.21 -31.11 16 7 H 0.04 2.37 7.32 -2.91 -0.02 2.35 16 8 C 0.01 0.44 5.47 84.65 0.46 0.91 16 9 N -0.95 -61.62 13.96 21.45 0.30 -61.32 16 10 Si 0.93 44.45 27.47 68.60 1.88 46.33 16 11 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.23 -9.64 6.54 99.48 0.65 -8.99 16 14 S 2.68 119.17 5.53 -56.49 -0.31 118.86 16 15 O -0.99 -43.87 15.51 -128.00 -1.99 -45.86 16 16 O -0.99 -54.09 16.87 -128.00 -2.16 -56.25 16 17 C -0.71 -24.33 5.93 22.45 0.13 -24.20 16 18 C -0.01 -0.31 9.52 22.21 0.21 -0.10 16 19 C -0.16 -2.74 10.07 22.31 0.22 -2.51 16 20 C -0.01 -0.15 10.03 22.18 0.22 0.07 16 21 C -0.20 -4.43 6.27 -19.53 -0.12 -4.55 16 22 C 0.18 5.79 6.69 22.68 0.15 5.94 16 23 O -0.32 -11.58 8.76 -95.00 -0.83 -12.42 16 24 C 0.05 1.28 4.26 31.18 0.13 1.41 16 25 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 26 C -0.15 -3.23 9.58 71.98 0.69 -2.54 16 27 C -0.09 -1.45 6.65 30.73 0.20 -1.24 16 28 H 0.05 1.63 6.69 -2.39 -0.02 1.61 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 3.22 6.91 -2.39 -0.02 3.21 16 32 H 0.03 1.12 7.93 -2.39 -0.02 1.11 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.06 2.48 6.65 -2.39 -0.02 2.47 16 35 H 0.05 2.21 5.51 -2.39 -0.01 2.20 16 36 H 0.04 1.99 4.98 -2.38 -0.01 1.97 16 37 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 38 H 0.15 3.70 7.30 -2.92 -0.02 3.68 16 39 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 40 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.11 1.46 7.92 -2.39 -0.02 1.45 16 Total: -1.00 -86.85 369.26 0.71 -86.14 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.94 Total: 18.14 kcal Atomic # 6 Polarization: -53.78 SS G_CDS: 4.23 Total: -49.55 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -1.06 Total: -105.40 kcal Atomic # 8 Polarization: -109.55 SS G_CDS: -4.98 Total: -114.53 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Atomic # 16 Polarization: 119.17 SS G_CDS: -0.31 Total: 118.86 kcal Total: -86.85 0.71 -86.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434553490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.909 kcal (2) G-P(sol) polarization free energy of solvation -86.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds