Wall clock time and date at job start Tue Mar 31 2020 23:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 N 1.46506 * 109.46656 * 119.99642 * 2 1 3 5 5 C 1.46498 * 120.00239 * 299.72110 * 4 2 1 6 6 C 1.50703 * 109.46964 * 84.99935 * 5 4 2 7 7 H 1.08004 * 119.99711 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99968 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00006 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00255 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.46950 * 90.00088 * 10 8 6 12 12 H 1.48501 * 109.47108 * 210.00195 * 10 8 6 13 13 H 1.48502 * 109.46839 * 329.99886 * 10 8 6 14 14 S 1.65597 * 119.99791 * 120.00335 * 4 2 1 15 15 O 1.42101 * 106.40154 * 203.53789 * 14 4 2 16 16 O 1.42106 * 106.40098 * 336.45446 * 14 4 2 17 17 C 1.76193 * 107.22140 * 89.99909 * 14 4 2 18 18 C 1.37969 * 119.88677 * 114.99792 * 17 14 4 19 19 C 1.38246 * 120.35409 * 180.02562 * 18 17 14 20 20 C 1.38393 * 119.76751 * 0.20873 * 19 18 17 21 21 C 1.37693 * 119.97911 * 359.92723 * 20 19 18 22 22 C 1.38935 * 120.78118 * 359.41669 * 21 20 19 23 23 O 1.36132 * 111.22599 * 180.83247 * 22 21 20 24 24 C 1.43771 * 109.29943 * 341.24307 * 23 22 21 25 25 H 1.08997 * 110.90578 * 145.97236 * 24 23 22 26 26 C 1.53007 * 110.74738 * 269.25317 * 24 23 22 27 27 C 1.51645 * 132.18225 * 179.41265 * 21 20 19 28 28 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 29 29 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 30 30 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47040 * 239.99530 * 2 1 3 32 32 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 34 34 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 35 35 H 1.08990 * 109.47572 * 205.00129 * 5 4 2 36 36 H 1.09003 * 109.47280 * 325.00485 * 5 4 2 37 37 H 0.97000 * 120.00049 * 180.02562 * 9 8 6 38 38 H 1.08001 * 119.82339 * 0.06391 * 18 17 14 39 39 H 1.08000 * 120.11515 * 180.18175 * 19 18 17 40 40 H 1.07993 * 120.00857 * 179.90028 * 20 19 18 41 41 H 1.09001 * 109.46865 * 173.37259 * 26 24 23 42 42 H 1.09003 * 109.46532 * 293.37068 * 26 24 23 43 43 H 1.08991 * 109.47204 * 53.36976 * 26 24 23 44 44 H 1.08998 * 110.93700 * 313.66451 * 27 21 20 45 45 H 1.09003 * 110.93537 * 77.34683 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.6693 -0.1865 2.5268 6 6 0.3260 -0.7342 2.9351 7 1 -0.2136 -1.3923 2.2702 8 6 -0.2140 -0.3951 4.1575 9 7 -1.3861 -0.8734 4.5141 10 14 0.7189 0.7438 5.3073 11 1 0.3369 2.1512 5.0273 12 1 0.3826 0.4102 6.7148 13 1 2.1788 0.5751 5.0939 14 16 2.9703 -2.0370 1.0444 15 8 2.8226 -2.7711 2.2521 16 8 2.6902 -2.5840 -0.2368 17 6 4.6443 -1.4894 0.9967 18 6 5.5102 -1.8360 2.0133 19 6 6.8255 -1.4112 1.9859 20 6 7.2737 -0.6307 0.9346 21 6 6.4106 -0.2813 -0.0797 22 6 5.0901 -0.7133 -0.0701 23 8 4.4191 -0.2719 -1.1692 24 6 5.1324 0.8334 -1.7493 25 1 5.0338 0.8332 -2.8348 26 6 4.6457 2.1602 -1.1630 27 6 6.5957 0.5537 -1.3319 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 2.4248 -0.5040 3.2454 36 1 1.6256 0.9024 2.5029 37 1 -1.7662 -0.6346 5.3739 38 1 5.1588 -2.4428 2.8347 39 1 7.5008 -1.6872 2.7823 40 1 8.3000 -0.2954 0.9101 41 1 5.2765 2.9713 -1.5269 42 1 3.6146 2.3363 -1.4695 43 1 4.6993 2.1182 -0.0752 44 1 7.1207 1.4821 -1.1069 45 1 7.1195 -0.0113 -2.1030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434553519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:21 Heat of formation + Delta-G solvation = -90.112323 kcal Electronic energy + Delta-G solvation = -29884.477280 eV Core-core repulsion = 25994.120050 eV Total energy + Delta-G solvation = -3890.357229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.38477 -38.83121 -38.43400 -38.19355 -36.87716 -34.73835 -34.29178 -32.66651 -31.91131 -31.33658 -29.34773 -28.50640 -27.24308 -24.37523 -24.30869 -23.06070 -22.67120 -21.80454 -19.75709 -19.05558 -19.00205 -18.33931 -18.04928 -17.41096 -17.09548 -16.79790 -16.15714 -16.06735 -15.54920 -15.27795 -14.78913 -14.63862 -14.50709 -14.46864 -14.36826 -13.86823 -13.82491 -13.64310 -13.44229 -13.24224 -13.11563 -13.06653 -13.04442 -13.00086 -12.75703 -12.71328 -12.55214 -12.33929 -12.02754 -11.97338 -11.87333 -11.67603 -11.59514 -11.52321 -11.24585 -10.71736 -10.36415 -9.74100 -9.30353 -8.23081 -6.25751 -0.59422 -0.20939 0.20811 1.35005 1.39651 1.48793 1.98342 2.11714 2.37711 2.45581 2.82427 3.09318 3.27593 3.42354 3.57371 3.88590 3.92094 3.97737 4.07863 4.26254 4.27785 4.29901 4.32994 4.37634 4.53233 4.67035 4.71334 4.79880 4.83137 4.89351 4.91224 4.94750 4.98424 5.03759 5.07550 5.12685 5.17736 5.25282 5.27968 5.32594 5.51829 5.55308 5.57844 5.67820 5.90556 6.01144 6.38322 6.76244 7.34638 8.94070 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.005267 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.780720 B = 5314.974939 C = 5762.043092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.145 3.855 3 C -0.171 4.171 4 N -0.976 5.976 5 C 0.235 3.765 6 C -0.524 4.524 7 H 0.035 0.965 8 C 0.009 3.991 9 N -0.948 5.948 10 Si 0.934 3.066 11 H -0.254 1.254 12 H -0.285 1.285 13 H -0.245 1.245 14 S 2.682 3.318 15 O -0.992 6.992 16 O -0.993 6.993 17 C -0.707 4.707 18 C -0.021 4.021 19 C -0.161 4.161 20 C -0.013 4.013 21 C -0.196 4.196 22 C 0.186 3.814 23 O -0.309 6.309 24 C 0.061 3.939 25 H 0.146 0.854 26 C -0.184 4.184 27 C -0.095 4.095 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.022 0.978 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.030 0.970 36 H 0.054 0.946 37 H 0.265 0.735 38 H 0.140 0.860 39 H 0.169 0.831 40 H 0.175 0.825 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.052 0.948 44 H 0.125 0.875 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.830 10.587 -12.771 28.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.040 3.960 3 C -0.229 4.229 4 N -0.814 5.814 5 C 0.111 3.889 6 C -0.563 4.563 7 H 0.054 0.946 8 C -0.188 4.188 9 N -0.589 5.589 10 Si 0.757 3.243 11 H -0.179 1.179 12 H -0.210 1.210 13 H -0.168 1.168 14 S 2.777 3.223 15 O -0.982 6.982 16 O -0.983 6.983 17 C -0.798 4.798 18 C -0.041 4.041 19 C -0.180 4.180 20 C -0.031 4.031 21 C -0.197 4.197 22 C 0.138 3.862 23 O -0.222 6.222 24 C 0.006 3.994 25 H 0.164 0.836 26 C -0.240 4.240 27 C -0.131 4.131 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.157 0.843 39 H 0.187 0.813 40 H 0.193 0.807 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.143 0.857 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 22.174 9.668 -12.818 27.377 hybrid contribution -0.237 0.036 1.033 1.060 sum 21.937 9.705 -11.785 26.727 Atomic orbital electron populations 1.22095 0.95513 1.00680 1.02511 1.20931 0.94577 0.94898 0.85583 1.22694 1.03110 0.94158 1.02908 1.57165 1.63520 1.47824 1.12898 1.19189 0.94546 0.96191 0.78981 1.21638 1.03351 1.28851 1.02502 0.94619 1.25803 0.95677 0.97966 0.99338 1.70066 1.19182 1.46934 1.22706 0.85910 0.80576 0.79764 0.78058 1.17867 1.21031 1.16807 1.01701 0.74575 0.73736 0.72241 1.93513 1.86598 1.70303 1.47788 1.93476 1.85242 1.76958 1.42616 1.29757 1.25067 1.21341 1.03621 1.20959 0.94291 0.94523 0.94311 1.21550 0.94907 1.00461 1.01068 1.21069 1.00449 0.91768 0.89818 1.21331 0.92858 1.05223 1.00318 1.19013 0.91976 0.90342 0.84905 1.87019 1.50490 1.48170 1.36532 1.24009 0.89863 0.84950 1.00542 0.83629 1.22677 1.04213 0.96021 1.01137 1.21997 0.96914 1.01009 0.93193 0.92338 0.89886 0.95843 0.89084 0.89841 0.89204 0.92856 0.95226 0.92781 0.92567 0.84265 0.81337 0.80729 0.87543 0.90031 0.92883 0.85700 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.90 8.21 71.98 0.59 -5.31 16 2 C 0.15 5.37 2.90 44.99 0.13 5.50 16 3 C -0.17 -4.74 7.90 71.98 0.57 -4.17 16 4 N -0.98 -42.60 2.73 -497.42 -1.36 -43.96 16 5 C 0.24 11.34 3.75 85.63 0.32 11.66 16 6 C -0.52 -30.85 8.08 25.60 0.21 -30.64 16 7 H 0.04 2.37 7.32 -2.91 -0.02 2.35 16 8 C 0.01 0.56 5.47 84.65 0.46 1.02 16 9 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 10 Si 0.93 43.64 27.47 68.60 1.88 45.53 16 11 H -0.25 -10.95 7.11 99.48 0.71 -10.24 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 H -0.24 -10.55 6.54 99.48 0.65 -9.90 16 14 S 2.68 119.97 5.53 -56.49 -0.31 119.66 16 15 O -0.99 -51.35 15.92 -128.00 -2.04 -53.39 16 16 O -0.99 -47.39 16.46 -128.00 -2.11 -49.50 16 17 C -0.71 -24.65 5.93 22.45 0.13 -24.52 16 18 C -0.02 -0.64 9.52 22.21 0.21 -0.43 16 19 C -0.16 -3.30 10.07 22.31 0.22 -3.07 16 20 C -0.01 -0.22 10.03 22.18 0.22 0.00 16 21 C -0.20 -3.93 6.26 -19.52 -0.12 -4.05 16 22 C 0.19 5.39 6.57 22.68 0.15 5.53 16 23 O -0.31 -8.28 8.85 -95.06 -0.84 -9.13 16 24 C 0.06 0.91 4.32 31.18 0.13 1.05 16 25 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 26 C -0.18 -2.36 7.72 71.98 0.56 -1.81 16 27 C -0.09 -1.10 6.65 30.73 0.20 -0.90 16 28 H 0.06 2.59 6.65 -2.38 -0.02 2.58 16 29 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.02 1.03 7.94 -2.39 -0.02 1.01 16 31 H 0.09 3.33 6.27 -2.39 -0.01 3.32 16 32 H 0.08 2.07 3.05 -2.39 -0.01 2.07 16 33 H 0.09 1.91 7.65 -2.39 -0.02 1.89 16 34 H 0.05 1.58 6.68 -2.39 -0.02 1.57 16 35 H 0.03 1.45 6.67 -2.39 -0.02 1.43 16 36 H 0.05 2.36 5.86 -2.39 -0.01 2.35 16 37 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 38 H 0.14 4.33 7.30 -2.91 -0.02 4.31 16 39 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 40 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 41 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.08 1.10 5.95 -2.39 -0.01 1.08 16 43 H 0.05 0.89 6.98 -2.39 -0.02 0.88 16 44 H 0.12 0.72 7.92 -2.39 -0.02 0.71 16 45 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -84.81 358.29 0.48 -84.34 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.96 Total: 16.93 kcal Atomic # 6 Polarization: -54.12 SS G_CDS: 3.99 Total: -50.13 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -1.06 Total: -104.32 kcal Atomic # 8 Polarization: -107.03 SS G_CDS: -4.99 Total: -112.02 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.53 kcal Atomic # 16 Polarization: 119.97 SS G_CDS: -0.31 Total: 119.66 kcal Total: -84.81 0.48 -84.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434553519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.774 kcal (2) G-P(sol) polarization free energy of solvation -84.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds