Wall clock time and date at job start Tue Mar 31 2020 23:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.66743 * 2 1 4 4 C 1.55006 * 110.48555 * 123.76257 * 2 1 3 5 5 C 1.51645 * 101.86255 * 143.75920 * 4 2 1 6 6 C 1.37735 * 132.17327 * 163.83424 * 5 4 2 7 7 C 1.38353 * 119.97760 * 180.90504 * 6 5 4 8 8 C 1.38292 * 119.76837 * 359.97438 * 7 6 5 9 9 C 1.37927 * 120.34996 * 359.81449 * 8 7 6 10 10 S 1.76193 * 119.88151 * 179.97438 * 9 8 7 11 11 O 1.42105 * 106.40403 * 228.54183 * 10 9 8 12 12 O 1.42098 * 106.40145 * 1.46112 * 10 9 8 13 13 N 1.65606 * 107.21910 * 115.00293 * 10 9 8 14 14 C 1.46500 * 120.00055 * 64.99793 * 13 10 9 15 15 C 1.52996 * 109.46863 * 165.00064 * 14 13 10 16 16 C 1.53003 * 109.47417 * 300.00127 * 15 14 13 17 17 C 1.53005 * 109.47179 * 60.00291 * 15 14 13 18 18 C 1.50699 * 109.47094 * 180.02562 * 15 14 13 19 19 H 1.07995 * 119.99849 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00230 * 180.02562 * 18 15 14 21 21 N 1.31517 * 120.00034 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99987 * 180.02562 * 20 18 15 23 23 H 1.48493 * 109.47292 * 60.00046 * 22 20 18 24 24 H 1.48504 * 109.46692 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47054 * 299.99413 * 22 20 18 26 26 C 1.38887 * 107.03708 * 344.53486 * 5 4 2 27 27 O 1.36132 * 111.21852 * 358.66931 * 26 5 4 28 28 H 1.09003 * 109.46720 * 181.76698 * 1 2 3 29 29 H 1.08998 * 109.47546 * 301.77112 * 1 2 3 30 30 H 1.09005 * 109.46610 * 61.77451 * 1 2 3 31 31 H 1.09001 * 111.45535 * 25.40877 * 4 2 1 32 32 H 1.09005 * 110.50062 * 261.68327 * 4 2 1 33 33 H 1.08003 * 120.01393 * 0.92709 * 6 5 4 34 34 H 1.08000 * 120.11680 * 180.02562 * 7 6 5 35 35 H 1.07996 * 119.82286 * 179.79493 * 8 7 6 36 36 H 0.97002 * 119.99610 * 244.99753 * 13 10 9 37 37 H 1.08996 * 109.46968 * 284.99889 * 14 13 10 38 38 H 1.09002 * 109.46843 * 45.00361 * 14 13 10 39 39 H 1.09003 * 109.46995 * 60.00155 * 16 15 14 40 40 H 1.08997 * 109.47008 * 180.02562 * 16 15 14 41 41 H 1.08991 * 109.46856 * 299.99980 * 16 15 14 42 42 H 1.08998 * 109.46879 * 59.99315 * 17 15 14 43 43 H 1.08997 * 109.47367 * 179.97438 * 17 15 14 44 44 H 1.09003 * 109.47149 * 299.99794 * 17 15 14 45 45 H 0.96992 * 120.00410 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0725 -0.8070 1.2071 5 6 3.3028 -1.4658 0.6141 6 6 4.3940 -2.0764 1.1917 7 6 5.4026 -2.5876 0.3944 8 6 5.3098 -2.4831 -0.9815 9 6 4.2159 -1.8759 -1.5621 10 16 4.1107 -1.7490 -3.3163 11 8 3.7729 -0.3985 -3.6014 12 8 5.2700 -2.3862 -3.8350 13 7 2.8183 -2.6659 -3.7975 14 6 1.4617 -2.2894 -3.3922 15 6 0.4450 -3.0468 -4.2487 16 6 0.6541 -2.6917 -5.7221 17 6 0.6358 -4.5525 -4.0548 18 6 -0.9505 -2.6591 -3.8322 19 1 -1.0974 -1.9438 -3.0366 20 6 -2.0396 -3.2177 -4.4669 21 7 -1.8606 -4.0892 -5.4355 22 14 -3.7693 -2.7365 -3.9512 23 1 -3.9540 -1.2754 -4.1409 24 1 -4.7562 -3.4727 -4.7816 25 1 -3.9728 -3.0798 -2.5208 26 6 3.1973 -1.3567 -0.7665 27 8 2.0395 -0.7368 -1.1247 28 1 -0.3633 -1.0272 0.0317 29 1 -0.3634 0.5411 0.8736 30 1 -0.3633 0.4861 -0.9055 31 1 1.3536 -1.5546 1.5423 32 1 2.3444 -0.1371 2.0229 33 1 4.4621 -2.1566 2.2665 34 1 6.2590 -3.0672 0.8449 35 1 6.0982 -2.8789 -1.6045 36 1 2.9595 -3.4522 -4.3477 37 1 1.3127 -2.5424 -2.3426 38 1 1.3258 -1.2168 -3.5304 39 1 1.6635 -2.9719 -6.0237 40 1 -0.0705 -3.2310 -6.3322 41 1 0.5181 -1.6192 -5.8602 42 1 0.4869 -4.8054 -3.0051 43 1 -0.0888 -5.0921 -4.6646 44 1 1.6452 -4.8326 -4.3563 45 1 -2.6268 -4.4825 -5.8817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434576288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:05 Heat of formation + Delta-G solvation = -83.892573 kcal Electronic energy + Delta-G solvation = -29186.763600 eV Core-core repulsion = 25296.676079 eV Total energy + Delta-G solvation = -3890.087521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.34086 -37.74421 -36.92774 -36.62069 -35.46419 -33.44112 -33.08825 -31.26482 -30.48651 -30.35160 -26.73450 -25.62027 -25.44666 -24.41305 -23.17628 -22.19361 -21.81780 -19.12737 -18.70661 -17.96090 -17.51731 -16.96151 -16.62869 -15.68762 -15.52510 -15.43952 -15.20198 -14.66957 -14.02736 -13.89808 -13.54342 -13.39689 -13.30125 -13.04475 -12.93292 -12.61780 -12.41336 -12.18744 -12.03205 -11.86186 -11.77205 -11.71157 -11.56679 -11.40885 -11.21585 -11.03787 -10.91177 -10.86510 -10.68627 -10.48931 -10.31962 -10.11766 -9.58371 -9.43120 -9.21245 -8.73818 -8.66467 -8.35282 -8.30903 -5.95909 -4.05927 0.65560 0.90450 1.15509 2.99818 3.24197 3.30040 3.35515 3.37220 3.56734 4.02778 4.18978 4.30499 4.41844 4.58560 4.79715 4.85123 4.93087 5.06947 5.12991 5.26250 5.30232 5.38611 5.53326 5.63734 5.67621 5.87614 5.92111 5.97885 6.02467 6.14976 6.16926 6.37554 6.43262 6.59264 6.62084 6.89939 6.95626 7.00187 7.10170 7.15617 7.43736 7.64130 7.66842 7.76035 8.10852 8.22761 8.47110 8.94056 9.58708 11.05343 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012187 B = 0.004903 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.966791 B = 5708.987719 C = 7122.274160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.076 3.924 3 H 0.092 0.908 4 C -0.104 4.104 5 C -0.197 4.197 6 C -0.022 4.022 7 C -0.173 4.173 8 C 0.006 3.994 9 C -0.692 4.692 10 S 2.694 3.306 11 O -0.954 6.954 12 O -0.976 6.976 13 N -1.105 6.105 14 C 0.135 3.865 15 C 0.064 3.936 16 C -0.132 4.132 17 C -0.131 4.131 18 C -0.502 4.502 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.885 5.885 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.279 1.279 26 C 0.210 3.790 27 O -0.278 6.278 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.416 0.584 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.009 0.991 40 H 0.083 0.917 41 H 0.027 0.973 42 H 0.025 0.975 43 H 0.085 0.915 44 H 0.008 0.992 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.096 4.106 14.055 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 H 0.110 0.890 4 C -0.141 4.141 5 C -0.199 4.199 6 C -0.041 4.041 7 C -0.192 4.192 8 C -0.014 4.014 9 C -0.778 4.778 10 S 2.782 3.218 11 O -0.943 6.943 12 O -0.966 6.966 13 N -0.868 5.868 14 C 0.010 3.990 15 C 0.062 3.938 16 C -0.190 4.190 17 C -0.189 4.189 18 C -0.541 4.541 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.205 1.205 26 C 0.161 3.839 27 O -0.190 6.190 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.167 0.833 36 H 0.252 0.748 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.028 0.972 40 H 0.102 0.898 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.104 0.896 44 H 0.027 0.973 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.347 4.667 13.316 17.498 hybrid contribution -1.107 -0.378 1.025 1.555 sum 9.241 4.290 14.342 17.592 Atomic orbital electron populations 1.21931 0.91213 1.04344 1.03570 1.23609 0.96654 0.95284 0.82442 0.88969 1.21969 0.94383 0.99268 0.98505 1.20879 0.98487 1.06628 0.93909 1.20538 0.91078 0.92447 0.99997 1.21110 1.00347 1.04280 0.93484 1.20742 0.94147 0.90787 0.95685 1.30133 1.01369 1.18443 1.27824 1.01805 0.72575 0.74114 0.73342 1.93587 1.83732 1.34318 1.82710 1.93528 1.48155 1.76920 1.77992 1.55438 1.20707 1.44643 1.66055 1.21668 0.78982 0.99952 0.98383 1.18270 0.92190 0.91676 0.91708 1.21816 0.98122 0.99583 0.99433 1.21832 0.97992 0.99285 0.99801 1.20956 0.89694 1.24825 1.18655 0.92517 1.24881 0.98775 0.94958 0.94921 1.69803 1.30113 1.28953 1.23517 0.86689 0.84391 0.78638 0.78406 1.20305 1.21412 1.20466 1.18869 0.84568 0.87834 0.92592 1.87124 1.32576 1.61206 1.38131 0.90717 0.90410 0.90359 0.88518 0.89058 0.85303 0.84726 0.83337 0.74762 0.93023 0.91242 0.97155 0.89831 0.95389 0.95631 0.89643 0.97315 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.59 37.16 0.36 -1.33 16 2 C 0.08 0.90 4.29 -25.67 -0.11 0.79 16 3 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.10 -1.05 6.64 -26.36 -0.17 -1.22 16 5 C -0.20 -2.49 6.27 -104.10 -0.65 -3.14 16 6 C -0.02 -0.24 10.03 -39.72 -0.40 -0.63 16 7 C -0.17 -1.86 10.07 -39.52 -0.40 -2.26 16 8 C 0.01 0.07 9.52 -39.68 -0.38 -0.31 16 9 C -0.69 -10.92 5.91 -39.30 -0.23 -11.16 16 10 S 2.69 48.10 5.64 -107.50 -0.61 47.50 16 11 O -0.95 -19.73 17.40 -57.17 -0.99 -20.73 16 12 O -0.98 -18.02 16.94 -57.17 -0.97 -18.99 16 13 N -1.10 -20.52 5.33 -10.62 -0.06 -20.57 16 14 C 0.13 2.82 3.55 -4.04 -0.01 2.80 16 15 C 0.06 1.50 0.51 -155.66 -0.08 1.42 16 16 C -0.13 -3.14 8.08 37.16 0.30 -2.84 16 17 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 18 C -0.50 -12.96 8.01 -34.44 -0.28 -13.23 16 19 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 21 N -0.89 -23.73 9.35 55.43 0.52 -23.21 16 22 Si 0.89 20.43 29.54 -169.99 -5.02 15.40 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 C 0.21 3.29 6.13 -38.95 -0.24 3.05 16 27 O -0.28 -4.53 7.98 -20.16 -0.16 -4.69 16 28 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 0.91 7.91 -51.93 -0.41 0.50 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.15 1.73 7.30 -52.49 -0.38 1.35 16 36 H 0.42 7.30 6.47 -34.47 -0.22 7.08 16 37 H 0.05 1.05 6.67 -51.93 -0.35 0.71 16 38 H 0.07 1.52 7.48 -51.93 -0.39 1.13 16 39 H 0.01 0.21 7.20 -51.93 -0.37 -0.17 16 40 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 44 H 0.01 0.16 6.60 -51.93 -0.34 -0.18 16 45 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -31.68 366.25 -10.30 -41.98 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.44 Total: 6.93 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -2.09 Total: -29.15 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.46 Total: -43.79 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -2.12 Total: -44.40 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 48.10 SS G_CDS: -0.61 Total: 47.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.68 -10.30 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434576288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.911 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds