Wall clock time and date at job start Tue Mar 31 2020 23:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46274 * 2 1 4 4 C 1.53039 * 109.45721 * 240.02905 * 2 1 3 5 5 C 1.53196 * 109.33748 * 178.59861 * 4 2 1 6 6 N 1.46995 * 108.73708 * 54.62190 * 5 4 2 7 7 S 1.65600 * 120.61359 * 126.38974 * 6 5 4 8 8 O 1.42103 * 106.39935 * 23.55886 * 7 6 5 9 9 O 1.42094 * 106.40240 * 156.47907 * 7 6 5 10 10 C 1.76202 * 107.21755 * 270.01832 * 7 6 5 11 11 C 1.38230 * 119.99876 * 269.72586 * 10 7 6 12 12 C 1.38233 * 119.99667 * 179.76437 * 11 10 7 13 13 C 1.38236 * 120.00133 * 0.50934 * 12 11 10 14 14 C 1.50697 * 120.00062 * 179.72302 * 13 12 11 15 15 C 1.50707 * 109.47352 * 270.02154 * 14 13 12 16 16 H 1.07999 * 119.99252 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00163 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99919 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99973 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47101 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46957 * 120.00322 * 19 17 15 22 22 H 1.48492 * 109.47294 * 240.00258 * 19 17 15 23 23 C 1.38236 * 119.99980 * 359.74361 * 13 12 11 24 24 C 1.38231 * 119.99711 * 89.99845 * 10 7 6 25 25 C 1.46925 * 118.75597 * 306.40484 * 6 5 4 26 26 C 1.53033 * 109.46004 * 119.95865 * 2 1 3 27 27 H 1.08997 * 109.50670 * 301.33526 * 26 2 1 28 28 O 1.42906 * 109.49826 * 61.40283 * 26 2 1 29 29 H 1.08999 * 109.47143 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46794 * 299.97314 * 1 2 3 31 31 H 1.08999 * 109.47146 * 59.96636 * 1 2 3 32 32 H 1.09002 * 109.49756 * 298.56584 * 4 2 1 33 33 H 1.09000 * 109.49883 * 58.63327 * 4 2 1 34 34 H 1.09001 * 109.58261 * 174.43824 * 5 4 2 35 35 H 1.08996 * 109.58319 * 294.86146 * 5 4 2 36 36 H 1.08001 * 119.99987 * 0.02562 * 11 10 7 37 37 H 1.08002 * 120.00106 * 180.22847 * 12 11 10 38 38 H 1.08998 * 109.47332 * 30.02288 * 14 13 12 39 39 H 1.08999 * 109.47521 * 150.02181 * 14 13 12 40 40 H 0.96998 * 119.99789 * 179.97438 * 18 17 15 41 41 H 1.08000 * 120.00126 * 179.97438 * 23 13 12 42 42 H 1.08003 * 120.00804 * 0.02562 * 24 10 7 43 43 H 1.09004 * 109.58683 * 293.82929 * 25 6 5 44 44 H 1.08994 * 109.70376 * 173.46782 * 25 6 5 45 45 H 0.96696 * 113.99908 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5714 -0.6887 -1.2650 6 7 4.0678 -1.2489 0.0001 7 16 5.1658 -2.4886 0.0002 8 8 5.8395 -2.4279 -1.2495 9 8 5.8392 -2.4280 1.2499 10 6 4.2516 -3.9949 0.0000 11 6 3.8978 -4.5887 1.1971 12 6 3.1764 -5.7679 1.1970 13 6 2.8179 -6.3587 -0.0002 14 6 2.0368 -7.6475 -0.0003 15 6 2.9916 -8.8136 -0.0002 16 1 4.0573 -8.6388 0.0003 17 6 2.5044 -10.1034 0.0002 18 7 1.2066 -10.3162 0.0001 19 14 3.6879 -11.5487 -0.0004 20 1 5.0847 -11.0447 -0.0007 21 1 3.4605 -12.3751 1.2124 22 1 3.4591 -12.3753 -1.2126 23 6 3.1762 -5.7676 -1.1973 24 6 3.8931 -4.5857 -1.1972 25 6 3.5714 -0.6884 1.2643 26 6 2.0398 -0.7206 1.2501 27 1 1.6573 -0.2205 2.1399 28 8 1.5908 -2.0771 1.2352 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5135 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 1.6977 -1.7557 -1.2382 33 1 1.6567 -0.2212 -2.1398 34 1 3.9411 -1.2846 -2.0995 35 1 3.9142 0.3408 -1.3683 36 1 4.1813 -4.1292 2.1324 37 1 2.8967 -6.2299 2.1322 38 1 1.4090 -7.6919 0.8896 39 1 1.4092 -7.6920 -0.8903 40 1 0.8640 -11.2236 0.0001 41 1 2.8965 -6.2294 -2.1327 42 1 4.1737 -4.1243 -2.1325 43 1 3.9143 0.3411 1.3672 44 1 3.9417 -1.2822 2.0999 45 1 1.8780 -2.5949 1.9997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463421448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:31 Heat of formation + Delta-G solvation = -112.053072 kcal Electronic energy + Delta-G solvation = -28419.747358 eV Core-core repulsion = 24528.438706 eV Total energy + Delta-G solvation = -3891.308652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.53785 -38.73430 -37.23186 -35.79450 -35.58268 -33.77550 -33.64492 -31.52004 -30.55926 -30.50315 -27.76245 -27.38930 -23.71612 -23.56921 -23.01940 -22.27937 -20.86234 -20.23866 -19.09666 -18.04240 -17.43332 -16.81196 -16.42859 -15.97117 -15.29157 -15.19211 -15.02861 -14.78841 -14.35834 -14.26762 -14.07216 -13.88137 -13.70202 -13.24992 -13.05701 -12.80553 -12.54336 -12.43734 -12.20262 -12.07108 -11.98918 -11.78600 -11.71914 -11.67081 -11.46361 -11.20246 -10.92635 -10.91057 -10.88880 -10.64521 -10.47956 -10.45603 -10.19851 -9.70853 -9.61609 -9.06496 -8.54586 -8.51085 -8.31036 -6.15775 -4.20572 0.47719 1.40254 1.85465 2.95209 3.23843 3.31898 3.37235 3.80423 4.04465 4.14443 4.31189 4.36746 4.41403 4.46545 4.65881 4.79673 4.90350 5.12759 5.17674 5.22422 5.23825 5.27529 5.33860 5.37945 5.38959 5.53752 5.56069 5.69485 5.76562 5.77952 5.88560 5.96120 5.99347 6.07544 6.28317 6.30833 6.36959 6.39811 6.57851 6.88576 6.95268 7.33112 7.48140 7.52625 7.62964 7.79683 8.15454 8.84638 9.44391 10.94282 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.003315 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.297421 B = 8445.682086 C = 9282.596898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.122 3.878 6 N -0.991 5.991 7 S 2.694 3.306 8 O -0.965 6.965 9 O -0.967 6.967 10 C -0.693 4.693 11 C -0.023 4.023 12 C -0.143 4.143 13 C 0.027 3.973 14 C 0.040 3.960 15 C -0.516 4.516 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.898 3.102 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.143 4.143 24 C -0.021 4.021 25 C 0.090 3.910 26 C 0.094 3.906 27 H 0.063 0.937 28 O -0.548 6.548 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.263 0.737 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 23.327 1.246 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.097 0.903 4 C -0.168 4.168 5 C -0.003 4.003 6 N -0.828 5.828 7 S 2.789 3.211 8 O -0.955 6.955 9 O -0.957 6.957 10 C -0.783 4.783 11 C -0.042 4.042 12 C -0.162 4.162 13 C 0.026 3.974 14 C 0.003 3.997 15 C -0.554 4.554 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.162 4.162 24 C -0.040 4.040 25 C -0.036 4.036 26 C 0.033 3.967 27 H 0.081 0.919 28 O -0.354 6.354 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.598 23.505 0.677 23.522 hybrid contribution 0.173 -1.558 0.564 1.666 sum 0.772 21.948 1.241 21.996 Atomic orbital electron populations 1.21761 0.94456 1.02819 1.01093 1.21065 0.96429 0.98287 0.93994 0.90311 1.21932 0.94776 1.02837 0.97263 1.21453 0.94575 0.99569 0.84672 1.57664 1.62964 1.50660 1.11517 1.01712 0.73301 0.72932 0.73194 1.93545 1.71091 1.86763 1.44104 1.93538 1.71170 1.86831 1.44183 1.30269 1.24481 1.23650 0.99888 1.20642 0.93262 0.94917 0.95419 1.21182 1.00494 0.95759 0.98734 1.21057 0.89879 0.94352 0.92074 1.18526 0.94803 0.87423 0.98968 1.21022 0.92847 0.89797 1.51772 0.92268 1.25000 0.95255 0.99030 0.94863 1.69959 1.11737 1.21289 1.50002 0.86439 0.81202 0.82135 0.77736 1.19581 1.20820 1.20810 1.21204 1.00473 0.95735 0.98808 1.20696 0.92976 0.94778 0.95594 1.22169 0.95298 1.00554 0.85624 1.22177 0.92059 0.84344 0.98113 0.91905 1.86597 1.77452 1.21848 1.49464 0.91500 0.93050 0.92885 0.89884 0.90986 0.89063 0.91192 0.85750 0.85562 0.94774 0.94803 0.92717 0.85577 0.85657 0.90290 0.88896 0.77742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.06 37.16 0.34 -0.79 16 2 C -0.08 -0.61 2.51 -90.58 -0.23 -0.83 16 3 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 4 C -0.13 -1.12 5.22 -26.61 -0.14 -1.26 16 5 C 0.12 1.12 6.38 -3.67 -0.02 1.10 16 6 N -0.99 -10.50 3.23 -113.47 -0.37 -10.86 16 7 S 2.69 38.22 5.69 -107.50 -0.61 37.61 16 8 O -0.96 -15.86 16.00 -57.17 -0.91 -16.78 16 9 O -0.97 -15.45 15.99 -57.17 -0.91 -16.36 16 10 C -0.69 -10.89 5.97 -39.59 -0.24 -11.13 16 11 C -0.02 -0.36 9.52 -39.59 -0.38 -0.74 16 12 C -0.14 -2.60 9.70 -39.58 -0.38 -2.98 16 13 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 14 C 0.04 0.97 5.10 -29.03 -0.15 0.83 16 15 C -0.52 -14.06 9.09 -34.44 -0.31 -14.38 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 19 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.14 -2.70 9.70 -39.58 -0.38 -3.08 16 24 C -0.02 -0.35 9.52 -39.58 -0.38 -0.72 16 25 C 0.09 0.75 6.02 -3.71 -0.02 0.73 16 26 C 0.09 0.74 3.22 -26.61 -0.09 0.66 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 O -0.55 -5.53 11.90 -35.23 -0.42 -5.95 16 29 H 0.07 0.65 7.72 -51.93 -0.40 0.25 16 30 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.91 7.61 -51.93 -0.40 0.52 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.88 7.13 -51.93 -0.37 0.51 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.12 1.63 7.61 -52.49 -0.40 1.23 16 37 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 42 H 0.13 1.82 7.62 -52.48 -0.40 1.42 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.77 7.13 -51.93 -0.37 0.40 16 45 H 0.38 3.02 9.08 45.56 0.41 3.43 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -33.28 377.76 -10.94 -44.21 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.11 Total: 2.14 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: -3.01 Total: -31.00 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.37 Total: -35.75 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -2.25 Total: -39.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 38.22 SS G_CDS: -0.61 Total: 37.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.28 -10.94 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463421448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.840 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds