Wall clock time and date at job start Tue Mar 31 2020 23:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46274 * 2 1 4 4 C 1.53039 * 109.45721 * 240.02905 * 2 1 3 5 5 C 1.53196 * 109.33748 * 178.59861 * 4 2 1 6 6 N 1.46995 * 108.73708 * 54.62190 * 5 4 2 7 7 S 1.65600 * 120.61359 * 126.38974 * 6 5 4 8 8 O 1.42103 * 106.39935 * 23.55886 * 7 6 5 9 9 O 1.42094 * 106.40240 * 156.47907 * 7 6 5 10 10 C 1.76202 * 107.21755 * 270.01832 * 7 6 5 11 11 C 1.38230 * 119.99876 * 269.72586 * 10 7 6 12 12 C 1.38233 * 119.99667 * 179.76437 * 11 10 7 13 13 C 1.38236 * 120.00133 * 0.50934 * 12 11 10 14 14 C 1.50697 * 120.00062 * 179.72302 * 13 12 11 15 15 C 1.50707 * 109.47352 * 270.02154 * 14 13 12 16 16 H 1.07999 * 119.99252 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00163 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99919 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99973 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47101 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46957 * 120.00322 * 19 17 15 22 22 H 1.48492 * 109.47294 * 240.00258 * 19 17 15 23 23 C 1.38236 * 119.99980 * 359.74361 * 13 12 11 24 24 C 1.38231 * 119.99711 * 89.99845 * 10 7 6 25 25 C 1.46925 * 118.75597 * 306.40484 * 6 5 4 26 26 C 1.53033 * 109.46004 * 119.95865 * 2 1 3 27 27 H 1.08997 * 109.50670 * 301.33526 * 26 2 1 28 28 O 1.42906 * 109.49826 * 61.40283 * 26 2 1 29 29 H 1.08999 * 109.47143 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46794 * 299.97314 * 1 2 3 31 31 H 1.08999 * 109.47146 * 59.96636 * 1 2 3 32 32 H 1.09002 * 109.49756 * 298.56584 * 4 2 1 33 33 H 1.09000 * 109.49883 * 58.63327 * 4 2 1 34 34 H 1.09001 * 109.58261 * 174.43824 * 5 4 2 35 35 H 1.08996 * 109.58319 * 294.86146 * 5 4 2 36 36 H 1.08001 * 119.99987 * 0.02562 * 11 10 7 37 37 H 1.08002 * 120.00106 * 180.22847 * 12 11 10 38 38 H 1.08998 * 109.47332 * 30.02288 * 14 13 12 39 39 H 1.08999 * 109.47521 * 150.02181 * 14 13 12 40 40 H 0.96998 * 119.99789 * 179.97438 * 18 17 15 41 41 H 1.08000 * 120.00126 * 179.97438 * 23 13 12 42 42 H 1.08003 * 120.00804 * 0.02562 * 24 10 7 43 43 H 1.09004 * 109.58683 * 293.82929 * 25 6 5 44 44 H 1.08994 * 109.70376 * 173.46782 * 25 6 5 45 45 H 0.96696 * 113.99908 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5714 -0.6887 -1.2650 6 7 4.0678 -1.2489 0.0001 7 16 5.1658 -2.4886 0.0002 8 8 5.8395 -2.4279 -1.2495 9 8 5.8392 -2.4280 1.2499 10 6 4.2516 -3.9949 0.0000 11 6 3.8978 -4.5887 1.1971 12 6 3.1764 -5.7679 1.1970 13 6 2.8179 -6.3587 -0.0002 14 6 2.0368 -7.6475 -0.0003 15 6 2.9916 -8.8136 -0.0002 16 1 4.0573 -8.6388 0.0003 17 6 2.5044 -10.1034 0.0002 18 7 1.2066 -10.3162 0.0001 19 14 3.6879 -11.5487 -0.0004 20 1 5.0847 -11.0447 -0.0007 21 1 3.4605 -12.3751 1.2124 22 1 3.4591 -12.3753 -1.2126 23 6 3.1762 -5.7676 -1.1973 24 6 3.8931 -4.5857 -1.1972 25 6 3.5714 -0.6884 1.2643 26 6 2.0398 -0.7206 1.2501 27 1 1.6573 -0.2205 2.1399 28 8 1.5908 -2.0771 1.2352 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5135 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 1.6977 -1.7557 -1.2382 33 1 1.6567 -0.2212 -2.1398 34 1 3.9411 -1.2846 -2.0995 35 1 3.9142 0.3408 -1.3683 36 1 4.1813 -4.1292 2.1324 37 1 2.8967 -6.2299 2.1322 38 1 1.4090 -7.6919 0.8896 39 1 1.4092 -7.6920 -0.8903 40 1 0.8640 -11.2236 0.0001 41 1 2.8965 -6.2294 -2.1327 42 1 4.1737 -4.1243 -2.1325 43 1 3.9143 0.3411 1.3672 44 1 3.9417 -1.2822 2.0999 45 1 1.8780 -2.5949 1.9997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463421448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:30 Heat of formation + Delta-G solvation = -135.157220 kcal Electronic energy + Delta-G solvation = -28420.749229 eV Core-core repulsion = 24528.438706 eV Total energy + Delta-G solvation = -3892.310523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.26058 -40.12055 -38.43307 -36.99591 -36.34179 -35.58722 -34.45833 -33.29210 -31.92207 -31.20481 -29.22541 -28.45181 -25.58325 -24.25104 -23.74271 -23.65451 -22.40599 -21.01184 -20.03518 -19.14524 -18.63535 -18.48538 -17.60478 -17.00027 -16.84607 -16.14647 -16.00505 -15.87793 -15.77636 -15.30380 -15.22232 -14.73562 -14.62138 -14.51899 -14.42357 -13.95895 -13.89992 -13.41057 -13.37184 -13.34654 -13.22365 -13.21503 -13.04822 -12.68774 -12.65637 -12.57733 -12.43314 -12.17414 -12.01823 -11.81960 -11.64449 -11.54049 -11.43733 -11.20954 -10.87494 -10.66255 -9.95702 -9.90541 -9.76756 -8.27324 -6.40229 -0.64564 0.00397 0.45021 1.36708 1.37996 1.50916 1.93040 2.34809 2.60519 2.83350 3.05143 3.22299 3.48932 3.65812 3.84749 3.88646 3.98347 4.03925 4.12897 4.18860 4.24696 4.48517 4.50760 4.52353 4.63231 4.74480 4.76055 4.80490 4.86255 4.90318 4.93242 4.96076 5.07532 5.13752 5.21448 5.26377 5.27274 5.31431 5.37014 5.42905 5.63852 5.65448 5.67177 5.89485 5.96258 6.11220 6.71946 6.93648 7.28993 8.82974 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.003315 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.297421 B = 8445.682086 C = 9282.596898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 H 0.104 0.896 4 C -0.127 4.127 5 C 0.116 3.884 6 N -0.982 5.982 7 S 2.715 3.285 8 O -0.986 6.986 9 O -0.981 6.981 10 C -0.691 4.691 11 C -0.013 4.013 12 C -0.149 4.149 13 C -0.004 4.004 14 C 0.050 3.950 15 C -0.533 4.533 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.965 3.035 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.275 1.275 23 C -0.156 4.156 24 C -0.020 4.020 25 C 0.082 3.918 26 C 0.091 3.909 27 H 0.085 0.915 28 O -0.572 6.572 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.157 0.843 37 H 0.130 0.870 38 H 0.013 0.987 39 H 0.009 0.991 40 H 0.267 0.733 41 H 0.123 0.877 42 H 0.146 0.854 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 25.883 1.818 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 H 0.122 0.878 4 C -0.166 4.166 5 C -0.009 4.009 6 N -0.822 5.822 7 S 2.807 3.193 8 O -0.976 6.976 9 O -0.971 6.971 10 C -0.778 4.778 11 C -0.032 4.032 12 C -0.168 4.168 13 C -0.005 4.005 14 C 0.013 3.987 15 C -0.571 4.571 16 H 0.071 0.929 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.789 3.211 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.201 1.201 23 C -0.174 4.174 24 C -0.039 4.039 25 C -0.043 4.043 26 C 0.031 3.969 27 H 0.103 0.897 28 O -0.379 6.379 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.174 0.826 37 H 0.148 0.852 38 H 0.031 0.969 39 H 0.027 0.973 40 H 0.076 0.924 41 H 0.141 0.859 42 H 0.164 0.836 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.929 26.039 1.254 26.141 hybrid contribution -0.277 -2.172 0.385 2.223 sum 1.652 23.867 1.638 23.981 Atomic orbital electron populations 1.21717 0.94850 1.01274 1.01967 1.21155 0.96079 0.99394 0.93255 0.87764 1.21896 0.94502 1.01437 0.98745 1.21690 0.94769 1.00799 0.83626 1.57445 1.62635 1.48929 1.13173 1.01106 0.73302 0.72606 0.72285 1.93517 1.72049 1.86973 1.45058 1.93516 1.71909 1.86971 1.44704 1.30792 1.22970 1.24595 0.99461 1.20916 0.91751 0.93634 0.96881 1.21247 1.00958 0.96699 0.97909 1.20759 0.91915 0.93786 0.94013 1.18239 0.94402 0.89445 0.96649 1.21326 0.92954 0.91144 1.51643 0.92855 1.25867 0.96889 1.01835 0.94344 1.70067 1.13498 1.22120 1.50836 0.85401 0.78952 0.78637 0.78105 1.19220 1.19935 1.20073 1.21227 1.01329 0.96796 0.98098 1.20895 0.92167 0.93812 0.97072 1.22487 0.95533 1.01960 0.84363 1.22355 0.91797 0.83548 0.99204 0.89684 1.86595 1.77941 1.23220 1.50115 0.94201 0.92097 0.92129 0.92898 0.89418 0.89839 0.88326 0.82583 0.85228 0.96866 0.97290 0.92390 0.85908 0.83604 0.87465 0.88669 0.77070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.06 71.98 0.65 -1.29 16 2 C -0.08 -1.00 2.51 -10.77 -0.03 -1.02 16 3 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 4 C -0.13 -1.93 5.22 30.67 0.16 -1.77 16 5 C 0.12 1.80 6.38 86.35 0.55 2.35 16 6 N -0.98 -18.05 3.23 -512.89 -1.66 -19.71 16 7 S 2.72 71.24 5.69 -56.49 -0.32 70.92 16 8 O -0.99 -30.57 16.00 -128.00 -2.05 -32.62 16 9 O -0.98 -28.80 15.99 -128.00 -2.05 -30.85 16 10 C -0.69 -20.93 5.97 22.27 0.13 -20.80 16 11 C -0.01 -0.39 9.52 22.27 0.21 -0.17 16 12 C -0.15 -5.51 9.70 22.27 0.22 -5.30 16 13 C 0.00 -0.19 5.07 -19.87 -0.10 -0.29 16 14 C 0.05 2.59 5.10 29.10 0.15 2.74 16 15 C -0.53 -30.10 9.09 25.60 0.23 -29.87 16 16 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 17 C 0.01 0.54 5.46 84.65 0.46 1.00 16 18 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 19 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 23 C -0.16 -6.06 9.70 22.27 0.22 -5.85 16 24 C -0.02 -0.67 9.52 22.27 0.21 -0.46 16 25 C 0.08 1.08 6.02 86.37 0.52 1.60 16 26 C 0.09 1.18 3.22 30.67 0.10 1.28 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 O -0.57 -10.87 11.90 -148.98 -1.77 -12.64 16 29 H 0.04 0.76 7.72 -2.39 -0.02 0.75 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 1.14 7.61 -2.39 -0.02 1.12 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.45 7.13 -2.39 -0.02 1.43 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.16 3.70 7.61 -2.91 -0.02 3.68 16 37 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 38 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16 39 H 0.01 0.49 8.09 -2.39 -0.02 0.47 16 40 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 41 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.15 4.12 7.62 -2.91 -0.02 4.10 16 43 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.10 1.25 7.13 -2.39 -0.02 1.23 16 45 H 0.38 5.70 9.08 -74.06 -0.67 5.03 16 Total: -1.00 -73.21 377.76 -1.53 -74.74 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.32 Total: 16.46 kcal Atomic # 6 Polarization: -61.54 SS G_CDS: 3.69 Total: -57.85 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -1.37 Total: -74.23 kcal Atomic # 8 Polarization: -70.24 SS G_CDS: -5.87 Total: -76.11 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 71.24 SS G_CDS: -0.32 Total: 70.92 kcal Total: -73.21 -1.53 -74.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463421448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.419 kcal (2) G-P(sol) polarization free energy of solvation -73.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds