Wall clock time and date at job start Tue Mar 31 2020 23:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46401 * 2 1 4 4 C 1.53035 * 109.45882 * 240.03512 * 2 1 3 5 5 C 1.53630 * 109.24149 * 178.49220 * 4 2 1 6 6 N 1.46924 * 108.54070 * 54.85794 * 5 4 2 7 7 S 1.65603 * 120.63199 * 126.37105 * 6 5 4 8 8 O 1.42100 * 106.40542 * 156.18055 * 7 6 5 9 9 O 1.42107 * 106.39938 * 23.25623 * 7 6 5 10 10 C 1.76198 * 107.21693 * 269.71877 * 7 6 5 11 11 C 1.38239 * 119.99857 * 89.99814 * 10 7 6 12 12 C 1.38235 * 120.00081 * 179.97438 * 11 10 7 13 13 C 1.38238 * 119.99756 * 359.97438 * 12 11 10 14 14 C 1.50706 * 120.00103 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47294 * 89.99178 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.38234 * 120.00173 * 0.26598 * 13 12 11 24 24 C 1.38229 * 120.00131 * 269.97643 * 10 7 6 25 25 C 1.46933 * 118.74001 * 306.09335 * 6 5 4 26 26 C 1.53047 * 109.45756 * 119.96914 * 2 1 3 27 27 H 1.09000 * 109.49430 * 61.43527 * 26 2 1 28 28 O 1.42897 * 109.49833 * 301.33831 * 26 2 1 29 29 H 1.08997 * 109.47170 * 300.03346 * 1 2 3 30 30 H 1.09006 * 109.46421 * 60.03057 * 1 2 3 31 31 H 1.09001 * 109.47295 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.50208 * 298.57030 * 4 2 1 33 33 H 1.08997 * 109.49643 * 58.63786 * 4 2 1 34 34 H 1.08996 * 109.73849 * 295.12256 * 5 4 2 35 35 H 1.08996 * 109.66900 * 174.54947 * 5 4 2 36 36 H 1.07996 * 120.00182 * 359.97438 * 11 10 7 37 37 H 1.08004 * 120.00311 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.46953 * 329.99736 * 14 13 12 39 39 H 1.08993 * 109.46894 * 209.99366 * 14 13 12 40 40 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 41 41 H 1.08005 * 120.00155 * 179.72911 * 23 13 12 42 42 H 1.08001 * 120.00328 * 359.97438 * 24 10 7 43 43 H 1.09000 * 109.58700 * 173.64640 * 25 6 5 44 44 H 1.08997 * 109.58560 * 293.93397 * 25 6 5 45 45 H 0.96699 * 113.99932 * 180.16208 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5757 -0.6848 -1.2642 6 7 4.0678 -1.2489 0.0000 7 16 5.1666 -2.4879 0.0000 8 8 5.8403 -2.4269 1.2497 9 8 5.8400 -2.4270 -1.2499 10 6 4.2534 -3.9948 0.0002 11 6 3.8950 -4.5860 -1.1969 12 6 3.1790 -5.7685 -1.1967 13 6 2.8219 -6.3600 0.0005 14 6 2.0418 -7.6495 0.0008 15 6 2.9974 -8.8147 -0.0001 16 1 4.0631 -8.6392 -0.0003 17 6 2.5113 -10.1049 0.0005 18 7 1.2137 -10.3188 0.0013 19 14 3.6958 -11.5493 0.0002 20 1 2.9272 -12.8200 0.0003 21 1 4.5517 -11.4879 1.2122 22 1 4.5504 -11.4885 -1.2128 23 6 3.1759 -5.7663 1.1976 24 6 3.8957 -4.5860 1.1974 25 6 3.5713 -0.6887 1.2643 26 6 2.0399 -0.7209 1.2501 27 1 1.6978 -1.7557 1.2382 28 8 1.5382 -0.0654 2.4166 29 1 -0.3633 0.5143 0.8897 30 1 -0.3632 0.5134 -0.8903 31 1 -0.3634 -1.0277 0.0005 32 1 1.6978 -1.7556 -1.2384 33 1 1.6568 -0.2209 -2.1397 34 1 3.9189 0.3450 -1.3630 35 1 3.9488 -1.2782 -2.0989 36 1 4.1744 -4.1241 -2.1322 37 1 2.8987 -6.2302 -2.1320 38 1 1.4136 -7.6942 -0.8889 39 1 1.4147 -7.6945 0.8911 40 1 0.5986 -9.5687 0.0018 41 1 2.8931 -6.2262 2.1330 42 1 4.1763 -4.1246 2.1327 43 1 3.9416 -1.2847 2.0985 44 1 3.9164 0.3400 1.3687 45 1 1.8241 -0.4684 3.2478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463421456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:35 Heat of formation + Delta-G solvation = -118.674893 kcal Electronic energy + Delta-G solvation = -28042.933271 eV Core-core repulsion = 24151.337476 eV Total energy + Delta-G solvation = -3891.595795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.54966 -38.93990 -37.34764 -36.19620 -35.88148 -34.04677 -33.85434 -31.56812 -30.72263 -30.39113 -27.84384 -27.14154 -23.62395 -23.58924 -23.07483 -22.46859 -21.19271 -20.53571 -19.07062 -18.18033 -17.46445 -17.41533 -16.93880 -16.34647 -15.31694 -15.22220 -15.09968 -14.84872 -14.43784 -14.24688 -13.97682 -13.77876 -13.54814 -13.37459 -13.28678 -13.22499 -12.72886 -12.55999 -12.37132 -12.20761 -12.13017 -12.03368 -11.85293 -11.84222 -11.68042 -11.31683 -10.99091 -10.93835 -10.90840 -10.61880 -10.60492 -10.50925 -10.24984 -10.03589 -9.32084 -9.22870 -8.71800 -8.52595 -8.34666 -6.54616 -4.27655 0.32216 1.20065 1.66169 2.80269 3.36678 3.37292 3.56424 3.66376 3.80588 3.98620 4.17651 4.37942 4.41629 4.43295 4.52868 4.68634 4.91497 4.92512 5.04401 5.05622 5.11565 5.22609 5.27065 5.32245 5.41079 5.44403 5.54905 5.56127 5.65377 5.66037 5.74274 5.76688 5.84594 6.03775 6.08385 6.10522 6.18062 6.22381 6.39723 6.67285 6.70106 6.92871 7.25333 7.31312 7.32614 7.89246 8.25101 8.65800 9.43544 10.84781 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003156 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.371753 B = 8870.101874 C = 9636.807411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 H 0.078 0.922 4 C -0.132 4.132 5 C 0.118 3.882 6 N -0.996 5.996 7 S 2.694 3.306 8 O -0.961 6.961 9 O -0.959 6.959 10 C -0.703 4.703 11 C -0.021 4.021 12 C -0.144 4.144 13 C 0.031 3.969 14 C 0.027 3.973 15 C -0.598 4.598 16 H 0.053 0.947 17 C 0.021 3.979 18 N -0.906 5.906 19 Si 1.071 2.929 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.286 1.286 23 C -0.145 4.145 24 C -0.023 4.023 25 C 0.092 3.908 26 C 0.094 3.906 27 H 0.064 0.936 28 O -0.561 6.561 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.269 0.731 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 22.408 0.268 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 H 0.096 0.904 4 C -0.171 4.171 5 C -0.007 4.007 6 N -0.834 5.834 7 S 2.788 3.212 8 O -0.952 6.952 9 O -0.950 6.950 10 C -0.792 4.792 11 C -0.041 4.041 12 C -0.163 4.163 13 C 0.031 3.969 14 C -0.010 4.010 15 C -0.636 4.636 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.541 5.541 19 Si 0.898 3.102 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.164 4.164 24 C -0.043 4.043 25 C -0.034 4.034 26 C 0.034 3.966 27 H 0.082 0.918 28 O -0.366 6.366 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.345 21.258 -0.176 21.301 hybrid contribution -0.391 0.729 0.441 0.938 sum 0.954 21.986 0.265 22.008 Atomic orbital electron populations 1.21752 0.94321 1.02059 1.01960 1.21038 0.96563 0.99812 0.92492 0.90403 1.22113 0.95092 1.02063 0.97821 1.21599 0.94254 1.00150 0.84661 1.57773 1.63380 1.50644 1.11630 1.01789 0.73262 0.72755 0.73357 1.93551 1.70825 1.86685 1.44114 1.93556 1.70773 1.86664 1.43991 1.30422 1.24732 1.24174 0.99877 1.20753 0.92828 0.94758 0.95740 1.21218 1.00595 0.95736 0.98759 1.20869 0.90002 0.93834 0.92217 1.18650 0.95377 0.89224 0.97724 1.21827 0.93597 0.91252 1.56946 0.92909 1.25918 0.98880 1.00268 0.93315 1.70806 1.02081 1.35420 1.45798 0.83506 0.74457 0.75412 0.76806 1.20560 1.21231 1.21229 1.21212 1.00619 0.95765 0.98756 1.20737 0.92979 0.94856 0.95692 1.22155 0.95019 1.00847 0.85418 1.22205 0.91814 0.96382 0.86215 0.91800 1.86510 1.75241 1.58869 1.15975 0.91782 0.92745 0.92732 0.90732 0.89885 0.90640 0.88673 0.85220 0.85395 0.95656 0.95678 0.92040 0.85436 0.85358 0.88960 0.90121 0.77270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.03 37.16 0.34 -0.84 16 2 C -0.08 -0.65 2.43 -90.57 -0.22 -0.87 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.13 -1.01 5.38 -26.39 -0.14 -1.15 16 5 C 0.12 1.00 6.41 -3.48 -0.02 0.97 16 6 N -1.00 -10.16 3.28 -113.27 -0.37 -10.54 16 7 S 2.69 36.79 5.69 -107.50 -0.61 36.17 16 8 O -0.96 -15.06 16.00 -57.17 -0.91 -15.97 16 9 O -0.96 -15.03 15.99 -57.17 -0.91 -15.95 16 10 C -0.70 -10.74 5.97 -39.58 -0.24 -10.98 16 11 C -0.02 -0.34 9.52 -39.58 -0.38 -0.71 16 12 C -0.14 -2.63 9.70 -39.58 -0.38 -3.02 16 13 C 0.03 0.64 5.07 -104.62 -0.53 0.11 16 14 C 0.03 0.65 4.42 -29.03 -0.13 0.52 16 15 C -0.60 -16.33 9.09 -34.44 -0.31 -16.64 16 16 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 17 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 18 N -0.91 -26.50 13.65 55.43 0.76 -25.74 16 19 Si 1.07 24.58 29.90 -169.99 -5.08 19.50 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.14 -2.64 9.70 -39.58 -0.38 -3.02 16 24 C -0.02 -0.37 9.52 -39.58 -0.38 -0.74 16 25 C 0.09 0.81 6.00 -3.71 -0.02 0.79 16 26 C 0.09 0.81 3.07 -26.61 -0.08 0.73 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 O -0.56 -4.65 12.60 -35.23 -0.44 -5.10 16 29 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.80 7.12 -51.93 -0.37 0.43 16 36 H 0.13 1.74 7.62 -52.49 -0.40 1.34 16 37 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 38 H 0.03 0.63 7.95 -51.93 -0.41 0.21 16 39 H 0.03 0.62 7.95 -51.93 -0.41 0.21 16 40 H 0.27 7.76 7.22 -40.82 -0.29 7.47 16 41 H 0.13 2.22 8.06 -52.48 -0.42 1.79 16 42 H 0.13 1.71 7.62 -52.49 -0.40 1.31 16 43 H 0.09 0.78 7.13 -51.93 -0.37 0.41 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.38 1.78 9.08 45.56 0.41 2.19 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -33.77 377.53 -10.95 -44.72 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.07 Total: 1.59 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: -2.98 Total: -34.38 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.38 Total: -36.28 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -2.27 Total: -37.01 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.50 kcal Atomic # 16 Polarization: 36.79 SS G_CDS: -0.61 Total: 36.17 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.77 -10.95 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463421456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.955 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds