Wall clock time and date at job start Tue Mar 31 2020 23:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46401 * 2 1 4 4 C 1.53035 * 109.45882 * 240.03512 * 2 1 3 5 5 C 1.53630 * 109.24149 * 178.49220 * 4 2 1 6 6 N 1.46924 * 108.54070 * 54.85794 * 5 4 2 7 7 S 1.65603 * 120.63199 * 126.37105 * 6 5 4 8 8 O 1.42100 * 106.40542 * 156.18055 * 7 6 5 9 9 O 1.42107 * 106.39938 * 23.25623 * 7 6 5 10 10 C 1.76198 * 107.21693 * 269.71877 * 7 6 5 11 11 C 1.38239 * 119.99857 * 89.99814 * 10 7 6 12 12 C 1.38235 * 120.00081 * 179.97438 * 11 10 7 13 13 C 1.38238 * 119.99756 * 359.97438 * 12 11 10 14 14 C 1.50706 * 120.00103 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47294 * 89.99178 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.38234 * 120.00173 * 0.26598 * 13 12 11 24 24 C 1.38229 * 120.00131 * 269.97643 * 10 7 6 25 25 C 1.46933 * 118.74001 * 306.09335 * 6 5 4 26 26 C 1.53047 * 109.45756 * 119.96914 * 2 1 3 27 27 H 1.09000 * 109.49430 * 61.43527 * 26 2 1 28 28 O 1.42897 * 109.49833 * 301.33831 * 26 2 1 29 29 H 1.08997 * 109.47170 * 300.03346 * 1 2 3 30 30 H 1.09006 * 109.46421 * 60.03057 * 1 2 3 31 31 H 1.09001 * 109.47295 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.50208 * 298.57030 * 4 2 1 33 33 H 1.08997 * 109.49643 * 58.63786 * 4 2 1 34 34 H 1.08996 * 109.73849 * 295.12256 * 5 4 2 35 35 H 1.08996 * 109.66900 * 174.54947 * 5 4 2 36 36 H 1.07996 * 120.00182 * 359.97438 * 11 10 7 37 37 H 1.08004 * 120.00311 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.46953 * 329.99736 * 14 13 12 39 39 H 1.08993 * 109.46894 * 209.99366 * 14 13 12 40 40 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 41 41 H 1.08005 * 120.00155 * 179.72911 * 23 13 12 42 42 H 1.08001 * 120.00328 * 359.97438 * 24 10 7 43 43 H 1.09000 * 109.58700 * 173.64640 * 25 6 5 44 44 H 1.08997 * 109.58560 * 293.93397 * 25 6 5 45 45 H 0.96699 * 113.99932 * 180.16208 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5757 -0.6848 -1.2642 6 7 4.0678 -1.2489 0.0000 7 16 5.1666 -2.4879 0.0000 8 8 5.8403 -2.4269 1.2497 9 8 5.8400 -2.4270 -1.2499 10 6 4.2534 -3.9948 0.0002 11 6 3.8950 -4.5860 -1.1969 12 6 3.1790 -5.7685 -1.1967 13 6 2.8219 -6.3600 0.0005 14 6 2.0418 -7.6495 0.0008 15 6 2.9974 -8.8147 -0.0001 16 1 4.0631 -8.6392 -0.0003 17 6 2.5113 -10.1049 0.0005 18 7 1.2137 -10.3188 0.0013 19 14 3.6958 -11.5493 0.0002 20 1 2.9272 -12.8200 0.0003 21 1 4.5517 -11.4879 1.2122 22 1 4.5504 -11.4885 -1.2128 23 6 3.1759 -5.7663 1.1976 24 6 3.8957 -4.5860 1.1974 25 6 3.5713 -0.6887 1.2643 26 6 2.0399 -0.7209 1.2501 27 1 1.6978 -1.7557 1.2382 28 8 1.5382 -0.0654 2.4166 29 1 -0.3633 0.5143 0.8897 30 1 -0.3632 0.5134 -0.8903 31 1 -0.3634 -1.0277 0.0005 32 1 1.6978 -1.7556 -1.2384 33 1 1.6568 -0.2209 -2.1397 34 1 3.9189 0.3450 -1.3630 35 1 3.9488 -1.2782 -2.0989 36 1 4.1744 -4.1241 -2.1322 37 1 2.8987 -6.2302 -2.1320 38 1 1.4136 -7.6942 -0.8889 39 1 1.4147 -7.6945 0.8911 40 1 0.5986 -9.5687 0.0018 41 1 2.8931 -6.2262 2.1330 42 1 4.1763 -4.1246 2.1327 43 1 3.9416 -1.2847 2.0985 44 1 3.9164 0.3400 1.3687 45 1 1.8241 -0.4684 3.2478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463421456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:34 Heat of formation + Delta-G solvation = -142.052801 kcal Electronic energy + Delta-G solvation = -28043.947013 eV Core-core repulsion = 24151.337476 eV Total energy + Delta-G solvation = -3892.609537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.36791 -40.20103 -38.50944 -37.07257 -36.85656 -35.98638 -34.54946 -33.28001 -32.07188 -31.05650 -28.93543 -28.54778 -25.53741 -24.27228 -23.84654 -23.78343 -22.71074 -21.28159 -20.04742 -19.26694 -19.04951 -18.45960 -18.10865 -17.31873 -16.58169 -16.39682 -15.87515 -15.77806 -15.69040 -15.56093 -15.43836 -15.13211 -14.77058 -14.57683 -14.21089 -14.01157 -13.90097 -13.59964 -13.57498 -13.46077 -13.32084 -13.25996 -13.17119 -12.89314 -12.57542 -12.56849 -12.53415 -12.15209 -12.02702 -11.95392 -11.73103 -11.57763 -11.23898 -11.16659 -11.13746 -10.64567 -10.08635 -10.06533 -9.93123 -8.75856 -6.50183 -0.77197 -0.16354 0.29276 1.50073 1.56691 1.77046 1.81001 2.42887 2.53585 2.69118 3.06610 3.09924 3.27030 3.66831 3.72880 3.76712 3.86738 3.88720 3.99045 4.00023 4.26437 4.29753 4.34274 4.35353 4.43672 4.64254 4.67302 4.68944 4.74430 4.78443 4.86478 4.91233 4.93798 4.99207 5.02561 5.06009 5.11193 5.19273 5.20581 5.40163 5.45600 5.49800 5.69590 5.76122 5.87354 6.05763 6.45695 6.84784 7.29240 8.63326 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003156 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.371753 B = 8870.101874 C = 9636.807411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 H 0.085 0.915 4 C -0.128 4.128 5 C 0.110 3.890 6 N -0.987 5.987 7 S 2.717 3.283 8 O -0.978 6.978 9 O -0.976 6.976 10 C -0.699 4.699 11 C -0.016 4.016 12 C -0.154 4.154 13 C -0.002 4.002 14 C 0.033 3.967 15 C -0.610 4.610 16 H 0.045 0.955 17 C -0.028 4.028 18 N -0.930 5.930 19 Si 1.115 2.885 20 H -0.280 1.280 21 H -0.270 1.270 22 H -0.270 1.270 23 C -0.155 4.155 24 C -0.018 4.018 25 C 0.088 3.912 26 C 0.097 3.903 27 H 0.051 0.949 28 O -0.571 6.571 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.157 0.843 37 H 0.128 0.872 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.258 0.742 41 H 0.128 0.872 42 H 0.156 0.844 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 24.583 0.074 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 H 0.104 0.896 4 C -0.167 4.167 5 C -0.014 4.014 6 N -0.827 5.827 7 S 2.809 3.191 8 O -0.969 6.969 9 O -0.966 6.966 10 C -0.786 4.786 11 C -0.035 4.035 12 C -0.173 4.173 13 C -0.002 4.002 14 C -0.004 4.004 15 C -0.647 4.647 16 H 0.064 0.936 17 C -0.227 4.227 18 N -0.567 5.567 19 Si 0.936 3.064 20 H -0.205 1.205 21 H -0.196 1.196 22 H -0.195 1.195 23 C -0.173 4.173 24 C -0.037 4.037 25 C -0.037 4.037 26 C 0.036 3.964 27 H 0.069 0.931 28 O -0.378 6.378 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.175 0.825 37 H 0.146 0.854 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.068 0.932 41 H 0.145 0.855 42 H 0.174 0.826 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.760 23.426 -0.359 23.590 hybrid contribution -0.854 0.253 0.523 1.033 sum 1.906 23.678 0.164 23.755 Atomic orbital electron populations 1.21718 0.94593 1.01385 1.02138 1.21080 0.96335 1.00196 0.92441 0.89619 1.22103 0.94596 1.01527 0.98503 1.21888 0.94657 1.01271 0.83631 1.57546 1.63040 1.49065 1.13078 1.01146 0.73161 0.72364 0.72464 1.93528 1.71624 1.86842 1.44862 1.93534 1.71539 1.86820 1.44708 1.30928 1.23187 1.25031 0.99435 1.21014 0.91617 0.93618 0.97267 1.21274 1.01268 0.96772 0.97989 1.20615 0.92071 0.93361 0.94163 1.18423 0.94998 0.90915 0.96059 1.22155 0.93757 0.92645 1.56186 0.93638 1.27353 0.99547 1.03386 0.92403 1.70921 1.02849 1.34995 1.47908 0.82951 0.73006 0.72410 0.78028 1.20478 1.19555 1.19548 1.21267 1.01296 0.96799 0.97986 1.21000 0.91757 0.93715 0.97232 1.22336 0.95047 1.01637 0.84720 1.22139 0.91679 0.95842 0.86745 0.93099 1.86488 1.75424 1.59149 1.16708 0.92660 0.91520 0.93810 0.92022 0.87826 0.88382 0.88532 0.82502 0.85405 0.97246 0.97281 0.93208 0.85450 0.82622 0.88608 0.88546 0.75591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.03 71.98 0.65 -1.45 16 2 C -0.08 -1.14 2.43 -10.76 -0.03 -1.17 16 3 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.13 -1.63 5.38 30.82 0.17 -1.46 16 5 C 0.11 1.50 6.41 86.51 0.55 2.06 16 6 N -0.99 -17.37 3.28 -512.28 -1.68 -19.05 16 7 S 2.72 67.42 5.69 -56.49 -0.32 67.09 16 8 O -0.98 -28.16 16.00 -128.00 -2.05 -30.21 16 9 O -0.98 -28.02 15.99 -128.00 -2.05 -30.06 16 10 C -0.70 -20.14 5.97 22.27 0.13 -20.01 16 11 C -0.02 -0.49 9.52 22.27 0.21 -0.28 16 12 C -0.15 -5.67 9.70 22.27 0.22 -5.46 16 13 C 0.00 -0.07 5.07 -19.86 -0.10 -0.17 16 14 C 0.03 1.67 4.42 29.10 0.13 1.80 16 15 C -0.61 -34.23 9.09 25.60 0.23 -34.00 16 16 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 17 C -0.03 -1.60 5.46 84.65 0.46 -1.14 16 18 N -0.93 -55.98 13.65 21.45 0.29 -55.69 16 19 Si 1.12 49.55 29.90 68.60 2.05 51.60 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 C -0.15 -5.69 9.70 22.27 0.22 -5.47 16 24 C -0.02 -0.54 9.52 22.27 0.21 -0.33 16 25 C 0.09 1.31 6.00 86.36 0.52 1.83 16 26 C 0.10 1.48 3.07 30.67 0.09 1.57 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 O -0.57 -8.38 12.60 -148.98 -1.88 -10.26 16 29 H 0.05 0.91 7.65 -2.39 -0.02 0.90 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 1.34 7.12 -2.39 -0.02 1.32 16 36 H 0.16 3.85 7.62 -2.91 -0.02 3.82 16 37 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 38 H 0.01 0.49 7.95 -2.39 -0.02 0.47 16 39 H 0.01 0.47 7.95 -2.39 -0.02 0.45 16 40 H 0.26 15.60 7.22 -92.71 -0.67 14.93 16 41 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 42 H 0.16 3.80 7.62 -2.91 -0.02 3.78 16 43 H 0.10 1.37 7.13 -2.39 -0.02 1.35 16 44 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.39 2.97 9.08 -74.06 -0.67 2.30 16 Total: -1.00 -73.04 377.53 -1.54 -74.59 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.42 Total: 15.67 kcal Atomic # 6 Polarization: -67.36 SS G_CDS: 3.67 Total: -63.69 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -1.39 Total: -74.74 kcal Atomic # 8 Polarization: -64.56 SS G_CDS: -5.97 Total: -70.53 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.05 Total: 51.60 kcal Atomic # 16 Polarization: 67.42 SS G_CDS: -0.32 Total: 67.09 kcal Total: -73.04 -1.54 -74.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463421456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.466 kcal (2) G-P(sol) polarization free energy of solvation -73.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds