Wall clock time and date at job start Tue Mar 31 2020 23:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46374 * 2 1 4 4 C 1.53040 * 109.46295 * 119.97855 * 2 1 3 5 5 C 1.53192 * 109.31336 * 181.38970 * 4 2 1 6 6 N 1.46932 * 108.77273 * 305.36011 * 5 4 2 7 7 S 1.65599 * 120.63145 * 233.63289 * 6 5 4 8 8 O 1.42092 * 106.40454 * 203.54040 * 7 6 5 9 9 O 1.42108 * 106.40139 * 336.46248 * 7 6 5 10 10 C 1.76204 * 107.21882 * 89.99728 * 7 6 5 11 11 C 1.38229 * 120.00130 * 269.73297 * 10 7 6 12 12 C 1.38237 * 119.99745 * 179.76904 * 11 10 7 13 13 C 1.38240 * 120.00237 * 0.49687 * 12 11 10 14 14 C 1.50696 * 120.00017 * 179.72853 * 13 12 11 15 15 C 1.50700 * 109.46966 * 270.01894 * 14 13 12 16 16 H 1.08000 * 120.00295 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99967 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99741 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00107 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47166 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46913 * 120.00519 * 19 17 15 22 22 H 1.48498 * 109.47232 * 240.00367 * 19 17 15 23 23 C 1.38235 * 119.99206 * 359.75416 * 13 12 11 24 24 C 1.38229 * 120.00732 * 359.97438 * 23 13 12 25 25 C 1.46922 * 118.73657 * 53.61080 * 6 5 4 26 26 C 1.53047 * 109.45890 * 240.03136 * 2 1 3 27 27 H 1.09000 * 109.49820 * 58.66435 * 26 2 1 28 28 O 1.42893 * 109.49643 * 298.56335 * 26 2 1 29 29 H 1.09002 * 109.47153 * 299.99534 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99707 * 1 2 3 32 32 H 1.09002 * 109.49605 * 301.33581 * 4 2 1 33 33 H 1.08991 * 109.50023 * 61.43483 * 4 2 1 34 34 H 1.08998 * 109.59088 * 65.14986 * 5 4 2 35 35 H 1.09003 * 109.58736 * 185.57625 * 5 4 2 36 36 H 1.08004 * 120.00638 * 359.97438 * 11 10 7 37 37 H 1.07997 * 120.00045 * 180.22854 * 12 11 10 38 38 H 1.08996 * 109.47149 * 30.02703 * 14 13 12 39 39 H 1.09001 * 109.46895 * 150.02814 * 14 13 12 40 40 H 0.97001 * 119.99873 * 179.97438 * 18 17 15 41 41 H 1.08007 * 119.99155 * 179.97438 * 23 13 12 42 42 H 1.08001 * 120.00253 * 179.97438 * 24 23 13 43 43 H 1.08997 * 109.58582 * 66.18113 * 25 6 5 44 44 H 1.09005 * 109.58775 * 186.60173 * 25 6 5 45 45 H 0.96704 * 113.99628 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5714 -0.6887 1.2641 6 7 4.0679 -1.2488 -0.0003 7 16 5.1658 -2.4885 -0.0006 8 8 5.8396 -2.4275 -1.2502 9 8 5.8393 -2.4283 1.2493 10 6 4.2517 -3.9948 -0.0011 11 6 3.8978 -4.5889 1.1958 12 6 3.1765 -5.7682 1.1953 13 6 2.8180 -6.3588 -0.0021 14 6 2.0370 -7.6475 -0.0025 15 6 2.9917 -8.8135 -0.0028 16 1 4.0575 -8.6387 -0.0023 17 6 2.5047 -10.1034 -0.0027 18 7 1.2068 -10.3162 -0.0028 19 14 3.6881 -11.5487 -0.0024 20 1 5.0849 -11.0447 -0.0016 21 1 3.4598 -12.3750 1.2101 22 1 3.4603 -12.3753 -1.2148 23 6 3.1764 -5.7672 -1.1989 24 6 3.8929 -4.5851 -1.1985 25 6 3.5713 -0.6883 -1.2644 26 6 2.0398 -0.7208 -1.2501 27 1 1.6572 -0.2208 -2.1399 28 8 1.5914 -2.0775 -1.2346 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.6573 -0.2211 2.1398 33 1 1.6979 -1.7558 1.2380 34 1 3.9143 0.3408 1.3674 35 1 3.9418 -1.2848 2.0981 36 1 4.1819 -4.1301 2.1313 37 1 2.8968 -6.2305 2.1304 38 1 1.4091 -7.6922 0.8873 39 1 1.4094 -7.6917 -0.8926 40 1 0.8642 -11.2236 -0.0031 41 1 2.8967 -6.2288 -2.1344 42 1 4.1732 -4.1232 -2.1336 43 1 3.9143 0.3412 -1.3673 44 1 3.9417 -1.2840 -2.0988 45 1 1.8787 -2.5954 -1.9990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463421461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:39 Heat of formation + Delta-G solvation = -112.088392 kcal Electronic energy + Delta-G solvation = -28420.725180 eV Core-core repulsion = 24529.414997 eV Total energy + Delta-G solvation = -3891.310183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.54213 -38.73412 -37.23223 -35.79497 -35.58532 -33.77778 -33.64475 -31.51981 -30.55878 -30.50351 -27.76281 -27.38954 -23.71587 -23.57037 -23.01802 -22.27913 -20.86286 -20.23959 -19.09737 -18.04312 -17.43425 -16.81256 -16.42883 -15.97090 -15.29270 -15.19330 -15.02945 -14.78799 -14.35880 -14.26797 -14.07248 -13.88175 -13.70212 -13.24948 -13.05695 -12.80556 -12.54366 -12.43764 -12.20277 -12.07157 -11.98967 -11.78685 -11.71965 -11.67108 -11.46377 -11.20313 -10.92647 -10.91051 -10.88844 -10.64518 -10.47927 -10.45608 -10.19849 -9.70890 -9.61609 -9.06498 -8.54593 -8.51096 -8.31038 -6.15801 -4.20570 0.47661 1.40218 1.85458 2.95311 3.23830 3.31887 3.37231 3.80379 4.04410 4.14488 4.31225 4.36722 4.41397 4.46533 4.65909 4.79703 4.90464 5.12762 5.17619 5.22357 5.23780 5.27543 5.33718 5.37993 5.38934 5.53794 5.56101 5.69483 5.76539 5.77952 5.88557 5.96100 5.99323 6.07567 6.28366 6.30822 6.36970 6.39914 6.57845 6.88556 6.95258 7.33086 7.48125 7.52535 7.62956 7.79659 8.15452 8.84632 9.44356 10.94246 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.003315 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.098869 B = 8445.344960 C = 9282.460616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.122 3.878 6 N -0.991 5.991 7 S 2.694 3.306 8 O -0.967 6.967 9 O -0.965 6.965 10 C -0.693 4.693 11 C -0.021 4.021 12 C -0.143 4.143 13 C 0.027 3.973 14 C 0.040 3.960 15 C -0.516 4.516 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.898 3.102 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.143 4.143 24 C -0.023 4.023 25 C 0.090 3.910 26 C 0.094 3.906 27 H 0.063 0.937 28 O -0.548 6.548 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.263 0.737 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 23.324 -1.244 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.097 0.903 4 C -0.168 4.168 5 C -0.003 4.003 6 N -0.828 5.828 7 S 2.789 3.211 8 O -0.957 6.957 9 O -0.955 6.955 10 C -0.783 4.783 11 C -0.040 4.040 12 C -0.162 4.162 13 C 0.026 3.974 14 C 0.003 3.997 15 C -0.554 4.554 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.162 4.162 24 C -0.042 4.042 25 C -0.036 4.036 26 C 0.033 3.967 27 H 0.081 0.919 28 O -0.354 6.354 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.597 23.502 -0.674 23.520 hybrid contribution 0.173 -1.558 -0.563 1.665 sum 0.770 21.945 -1.236 21.993 Atomic orbital electron populations 1.21761 0.94457 1.02821 1.01093 1.21067 0.96428 0.98285 0.93996 0.90309 1.21931 0.94776 1.02834 0.97264 1.21442 0.94579 0.99568 0.84690 1.57654 1.62958 1.50662 1.11528 1.01714 0.73301 0.72931 0.73195 1.93538 1.71151 1.86829 1.44198 1.93546 1.71104 1.86765 1.44085 1.30270 1.24475 1.23652 0.99889 1.20697 0.92976 0.94767 0.95604 1.21206 1.00428 0.95782 0.98806 1.21059 0.89875 0.94354 0.92073 1.18524 0.94801 0.87421 0.98967 1.21022 0.92847 0.89796 1.51778 0.92267 1.25003 0.95255 0.99031 0.94862 1.69960 1.11739 1.21288 1.49996 0.86438 0.81201 0.82132 0.77735 1.19582 1.20816 1.20814 1.21181 1.00547 0.95703 0.98738 1.20641 0.93267 0.94926 0.95406 1.22178 0.95304 1.00547 0.85618 1.22177 0.92062 0.84343 0.98117 0.91902 1.86597 1.77484 1.21816 1.49456 0.92882 0.91501 0.93051 0.90985 0.89881 0.91198 0.89077 0.85648 0.85579 0.94802 0.94776 0.92717 0.85562 0.85760 0.90271 0.88910 0.77742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.06 37.16 0.34 -0.79 16 2 C -0.08 -0.61 2.51 -90.58 -0.23 -0.83 16 3 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -1.12 5.22 -26.61 -0.14 -1.26 16 5 C 0.12 1.12 6.38 -3.71 -0.02 1.10 16 6 N -0.99 -10.50 3.23 -113.52 -0.37 -10.86 16 7 S 2.69 38.22 5.69 -107.50 -0.61 37.61 16 8 O -0.97 -15.45 16.00 -57.17 -0.91 -16.36 16 9 O -0.96 -15.86 15.99 -57.17 -0.91 -16.77 16 10 C -0.69 -10.89 5.97 -39.58 -0.24 -11.13 16 11 C -0.02 -0.35 9.52 -39.58 -0.38 -0.72 16 12 C -0.14 -2.70 9.70 -39.58 -0.38 -3.08 16 13 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 14 C 0.04 0.97 5.10 -29.04 -0.15 0.83 16 15 C -0.52 -14.06 9.09 -34.44 -0.31 -14.38 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 19 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.14 -2.59 9.70 -39.59 -0.38 -2.98 16 24 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 25 C 0.09 0.75 6.02 -3.71 -0.02 0.73 16 26 C 0.09 0.74 3.22 -26.61 -0.09 0.66 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 O -0.55 -5.53 11.90 -35.23 -0.42 -5.95 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.65 7.72 -51.93 -0.40 0.25 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.92 7.61 -51.93 -0.40 0.52 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.88 7.12 -51.93 -0.37 0.51 16 36 H 0.13 1.82 7.61 -52.48 -0.40 1.42 16 37 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 38 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 42 H 0.12 1.62 7.62 -52.49 -0.40 1.22 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.77 7.13 -51.93 -0.37 0.40 16 45 H 0.38 3.02 9.08 45.56 0.41 3.43 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -33.27 377.74 -10.94 -44.21 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.11 Total: 2.15 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: -3.01 Total: -31.00 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.37 Total: -35.75 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -2.25 Total: -39.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 38.22 SS G_CDS: -0.61 Total: 37.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.27 -10.94 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463421461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.880 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds