Wall clock time and date at job start Tue Mar 31 2020 23:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46374 * 2 1 4 4 C 1.53040 * 109.46295 * 119.97855 * 2 1 3 5 5 C 1.53192 * 109.31336 * 181.38970 * 4 2 1 6 6 N 1.46932 * 108.77273 * 305.36011 * 5 4 2 7 7 S 1.65599 * 120.63145 * 233.63289 * 6 5 4 8 8 O 1.42092 * 106.40454 * 203.54040 * 7 6 5 9 9 O 1.42108 * 106.40139 * 336.46248 * 7 6 5 10 10 C 1.76204 * 107.21882 * 89.99728 * 7 6 5 11 11 C 1.38229 * 120.00130 * 269.73297 * 10 7 6 12 12 C 1.38237 * 119.99745 * 179.76904 * 11 10 7 13 13 C 1.38240 * 120.00237 * 0.49687 * 12 11 10 14 14 C 1.50696 * 120.00017 * 179.72853 * 13 12 11 15 15 C 1.50700 * 109.46966 * 270.01894 * 14 13 12 16 16 H 1.08000 * 120.00295 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99967 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99741 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00107 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47166 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46913 * 120.00519 * 19 17 15 22 22 H 1.48498 * 109.47232 * 240.00367 * 19 17 15 23 23 C 1.38235 * 119.99206 * 359.75416 * 13 12 11 24 24 C 1.38229 * 120.00732 * 359.97438 * 23 13 12 25 25 C 1.46922 * 118.73657 * 53.61080 * 6 5 4 26 26 C 1.53047 * 109.45890 * 240.03136 * 2 1 3 27 27 H 1.09000 * 109.49820 * 58.66435 * 26 2 1 28 28 O 1.42893 * 109.49643 * 298.56335 * 26 2 1 29 29 H 1.09002 * 109.47153 * 299.99534 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99707 * 1 2 3 32 32 H 1.09002 * 109.49605 * 301.33581 * 4 2 1 33 33 H 1.08991 * 109.50023 * 61.43483 * 4 2 1 34 34 H 1.08998 * 109.59088 * 65.14986 * 5 4 2 35 35 H 1.09003 * 109.58736 * 185.57625 * 5 4 2 36 36 H 1.08004 * 120.00638 * 359.97438 * 11 10 7 37 37 H 1.07997 * 120.00045 * 180.22854 * 12 11 10 38 38 H 1.08996 * 109.47149 * 30.02703 * 14 13 12 39 39 H 1.09001 * 109.46895 * 150.02814 * 14 13 12 40 40 H 0.97001 * 119.99873 * 179.97438 * 18 17 15 41 41 H 1.08007 * 119.99155 * 179.97438 * 23 13 12 42 42 H 1.08001 * 120.00253 * 179.97438 * 24 23 13 43 43 H 1.08997 * 109.58582 * 66.18113 * 25 6 5 44 44 H 1.09005 * 109.58775 * 186.60173 * 25 6 5 45 45 H 0.96704 * 113.99628 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5714 -0.6887 1.2641 6 7 4.0679 -1.2488 -0.0003 7 16 5.1658 -2.4885 -0.0006 8 8 5.8396 -2.4275 -1.2502 9 8 5.8393 -2.4283 1.2493 10 6 4.2517 -3.9948 -0.0011 11 6 3.8978 -4.5889 1.1958 12 6 3.1765 -5.7682 1.1953 13 6 2.8180 -6.3588 -0.0021 14 6 2.0370 -7.6475 -0.0025 15 6 2.9917 -8.8135 -0.0028 16 1 4.0575 -8.6387 -0.0023 17 6 2.5047 -10.1034 -0.0027 18 7 1.2068 -10.3162 -0.0028 19 14 3.6881 -11.5487 -0.0024 20 1 5.0849 -11.0447 -0.0016 21 1 3.4598 -12.3750 1.2101 22 1 3.4603 -12.3753 -1.2148 23 6 3.1764 -5.7672 -1.1989 24 6 3.8929 -4.5851 -1.1985 25 6 3.5713 -0.6883 -1.2644 26 6 2.0398 -0.7208 -1.2501 27 1 1.6572 -0.2208 -2.1399 28 8 1.5914 -2.0775 -1.2346 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.6573 -0.2211 2.1398 33 1 1.6979 -1.7558 1.2380 34 1 3.9143 0.3408 1.3674 35 1 3.9418 -1.2848 2.0981 36 1 4.1819 -4.1301 2.1313 37 1 2.8968 -6.2305 2.1304 38 1 1.4091 -7.6922 0.8873 39 1 1.4094 -7.6917 -0.8926 40 1 0.8642 -11.2236 -0.0031 41 1 2.8967 -6.2288 -2.1344 42 1 4.1732 -4.1232 -2.1336 43 1 3.9143 0.3412 -1.3673 44 1 3.9417 -1.2840 -2.0988 45 1 1.8787 -2.5954 -1.9990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463421461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:38 Heat of formation + Delta-G solvation = -135.188795 kcal Electronic energy + Delta-G solvation = -28421.726889 eV Core-core repulsion = 24529.414997 eV Total energy + Delta-G solvation = -3892.311892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.26330 -40.12190 -38.43343 -36.99611 -36.34480 -35.58692 -34.46049 -33.29185 -31.92198 -31.20470 -29.22545 -28.45213 -25.58291 -24.25248 -23.74168 -23.65394 -22.40612 -21.01296 -20.03563 -19.14587 -18.63587 -18.48595 -17.60556 -16.99975 -16.84623 -16.14760 -16.00506 -15.87958 -15.77610 -15.30375 -15.22274 -14.73620 -14.62150 -14.51963 -14.42322 -13.95890 -13.89963 -13.41072 -13.37196 -13.34681 -13.22398 -13.21556 -13.04799 -12.68781 -12.65655 -12.57856 -12.43419 -12.17418 -12.01799 -11.82023 -11.64478 -11.54010 -11.43760 -11.20910 -10.87474 -10.66245 -9.95725 -9.90538 -9.76727 -8.27341 -6.40221 -0.64627 0.00378 0.45029 1.36690 1.37997 1.50913 1.93095 2.34803 2.60481 2.83349 3.05112 3.22270 3.48932 3.65928 3.84727 3.88623 3.98337 4.03943 4.12910 4.18853 4.24791 4.48491 4.50767 4.52358 4.63199 4.74389 4.76071 4.80448 4.86254 4.90343 4.93236 4.96101 5.07524 5.13747 5.21452 5.26376 5.27274 5.31380 5.37009 5.42922 5.63905 5.65571 5.67161 5.89484 5.96255 6.11220 6.71947 6.93582 7.28961 8.82945 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.003315 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.098869 B = 8445.344960 C = 9282.460616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 H 0.104 0.896 4 C -0.127 4.127 5 C 0.115 3.885 6 N -0.982 5.982 7 S 2.715 3.285 8 O -0.981 6.981 9 O -0.986 6.986 10 C -0.691 4.691 11 C -0.020 4.020 12 C -0.156 4.156 13 C -0.004 4.004 14 C 0.050 3.950 15 C -0.533 4.533 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.965 3.035 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.274 1.274 23 C -0.149 4.149 24 C -0.013 4.013 25 C 0.082 3.918 26 C 0.091 3.909 27 H 0.086 0.914 28 O -0.572 6.572 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.146 0.854 37 H 0.123 0.877 38 H 0.009 0.991 39 H 0.013 0.987 40 H 0.267 0.733 41 H 0.130 0.870 42 H 0.157 0.843 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 25.884 -1.823 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 H 0.122 0.878 4 C -0.166 4.166 5 C -0.009 4.009 6 N -0.822 5.822 7 S 2.807 3.193 8 O -0.971 6.971 9 O -0.976 6.976 10 C -0.778 4.778 11 C -0.040 4.040 12 C -0.174 4.174 13 C -0.005 4.005 14 C 0.013 3.987 15 C -0.571 4.571 16 H 0.071 0.929 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.789 3.211 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.199 1.199 23 C -0.168 4.168 24 C -0.032 4.032 25 C -0.043 4.043 26 C 0.031 3.969 27 H 0.103 0.897 28 O -0.379 6.379 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.164 0.836 37 H 0.141 0.859 38 H 0.027 0.973 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.148 0.852 42 H 0.174 0.826 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.927 26.040 -1.258 26.141 hybrid contribution -0.277 -2.173 -0.381 2.224 sum 1.650 23.867 -1.638 23.980 Atomic orbital electron populations 1.21716 0.94852 1.01274 1.01967 1.21157 0.96078 0.99393 0.93256 0.87761 1.21895 0.94503 1.01432 0.98748 1.21678 0.94773 1.00797 0.83644 1.57436 1.62631 1.48930 1.13183 1.01108 0.73301 0.72604 0.72287 1.93517 1.71889 1.86969 1.44719 1.93518 1.72062 1.86975 1.45041 1.30794 1.22967 1.24597 0.99462 1.20896 0.92173 0.93806 0.97083 1.21227 1.01287 0.96838 0.98094 1.20760 0.91913 0.93787 0.94012 1.18238 0.94400 0.89443 0.96649 1.21327 0.92954 0.91143 1.51646 0.92854 1.25870 0.96889 1.01834 0.94344 1.70068 1.13497 1.22118 1.50832 0.85401 0.78954 0.78637 0.78103 1.19218 1.20088 1.19924 1.21247 1.01008 0.96652 0.97914 1.20916 0.91743 0.93639 0.96869 1.22496 0.95537 1.01954 0.84352 1.22354 0.91802 0.83547 0.99207 0.89679 1.86595 1.77973 1.23188 1.50107 0.92128 0.94202 0.92097 0.89419 0.92899 0.88329 0.89861 0.83607 0.85917 0.97292 0.96862 0.92390 0.85223 0.82575 0.87443 0.88684 0.77071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.06 71.98 0.65 -1.29 16 2 C -0.08 -1.00 2.51 -10.77 -0.03 -1.02 16 3 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.13 -1.93 5.22 30.67 0.16 -1.77 16 5 C 0.12 1.80 6.38 86.36 0.55 2.35 16 6 N -0.98 -18.05 3.23 -513.06 -1.66 -19.71 16 7 S 2.72 71.23 5.69 -56.49 -0.32 70.91 16 8 O -0.98 -28.80 16.00 -128.00 -2.05 -30.84 16 9 O -0.99 -30.57 15.99 -128.00 -2.05 -32.62 16 10 C -0.69 -20.93 5.97 22.27 0.13 -20.80 16 11 C -0.02 -0.67 9.52 22.27 0.21 -0.46 16 12 C -0.16 -6.06 9.70 22.27 0.22 -5.85 16 13 C 0.00 -0.19 5.07 -19.87 -0.10 -0.29 16 14 C 0.05 2.59 5.10 29.10 0.15 2.74 16 15 C -0.53 -30.10 9.09 25.60 0.23 -29.87 16 16 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 17 C 0.01 0.54 5.46 84.66 0.46 1.00 16 18 N -0.93 -54.80 13.29 21.45 0.28 -54.52 16 19 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 C -0.15 -5.51 9.70 22.27 0.22 -5.30 16 24 C -0.01 -0.38 9.52 22.27 0.21 -0.17 16 25 C 0.08 1.08 6.02 86.36 0.52 1.60 16 26 C 0.09 1.18 3.22 30.67 0.10 1.28 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 O -0.57 -10.86 11.90 -148.98 -1.77 -12.63 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.76 7.72 -2.39 -0.02 0.74 16 31 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.14 7.61 -2.39 -0.02 1.12 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.44 7.12 -2.39 -0.02 1.43 16 36 H 0.15 4.13 7.61 -2.91 -0.02 4.10 16 37 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.01 0.49 8.09 -2.39 -0.02 0.47 16 39 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16 40 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 41 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 42 H 0.16 3.70 7.62 -2.91 -0.02 3.67 16 43 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.09 1.25 7.13 -2.38 -0.02 1.23 16 45 H 0.38 5.70 9.08 -74.05 -0.67 5.02 16 Total: -1.00 -73.21 377.74 -1.53 -74.74 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.32 Total: 16.45 kcal Atomic # 6 Polarization: -61.54 SS G_CDS: 3.69 Total: -57.85 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -1.37 Total: -74.23 kcal Atomic # 8 Polarization: -70.23 SS G_CDS: -5.87 Total: -76.09 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 71.23 SS G_CDS: -0.32 Total: 70.91 kcal Total: -73.21 -1.53 -74.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463421461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.453 kcal (2) G-P(sol) polarization free energy of solvation -73.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds