Wall clock time and date at job start Tue Mar 31 2020 23:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47659 * 2 1 4 4 S 1.81404 * 109.46903 * 120.00303 * 2 1 3 5 5 O 1.42098 * 108.57648 * 305.50520 * 4 2 1 6 6 O 1.42105 * 108.57679 * 174.48340 * 4 2 1 7 7 C 1.81398 * 101.92442 * 59.99685 * 4 2 1 8 8 C 1.52991 * 109.47098 * 180.02562 * 7 4 2 9 9 N 1.46505 * 109.47165 * 180.02562 * 8 7 4 10 10 C 1.34780 * 119.99925 * 179.97438 * 9 8 7 11 11 O 1.21275 * 120.00369 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99729 * 179.97438 * 10 9 8 13 13 H 1.09003 * 109.47099 * 322.43525 * 12 10 9 14 14 C 1.50703 * 109.47255 * 82.43223 * 12 10 9 15 15 H 1.08002 * 119.99717 * 54.77883 * 14 12 10 16 16 C 1.37878 * 119.99995 * 234.78269 * 14 12 10 17 17 N 1.31517 * 119.99554 * 175.92208 * 16 14 12 18 18 Si 1.86793 * 120.00153 * 355.91632 * 16 14 12 19 19 H 1.48494 * 109.47473 * 83.73622 * 18 16 14 20 20 H 1.48501 * 109.47143 * 203.73707 * 18 16 14 21 21 H 1.48507 * 109.47286 * 323.73564 * 18 16 14 22 22 C 1.50697 * 109.47123 * 202.43479 * 12 10 9 23 23 C 1.38230 * 120.00152 * 112.25371 * 22 12 10 24 24 C 1.38233 * 119.99934 * 179.97438 * 23 22 12 25 25 C 1.38232 * 120.00305 * 359.95464 * 24 23 22 26 26 C 1.38237 * 119.99727 * 0.02562 * 25 24 23 27 27 C 1.38231 * 120.00078 * 0.06436 * 26 25 24 28 28 H 1.09001 * 109.47316 * 300.00416 * 1 2 3 29 29 H 1.09008 * 109.47393 * 59.99568 * 1 2 3 30 30 H 1.08998 * 109.47667 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46793 * 239.99567 * 2 1 3 32 32 H 1.08998 * 109.47393 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46568 * 300.00153 * 3 2 1 34 34 H 1.09001 * 109.47097 * 59.99449 * 3 2 1 35 35 H 1.09004 * 109.47105 * 59.99969 * 7 4 2 36 36 H 1.09004 * 109.46923 * 300.00046 * 7 4 2 37 37 H 1.08995 * 109.47458 * 59.99850 * 8 7 4 38 38 H 1.09004 * 109.47058 * 299.99703 * 8 7 4 39 39 H 0.97003 * 119.99794 * 359.97438 * 9 8 7 40 40 H 0.96996 * 119.99434 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.00183 * 359.97438 * 23 22 12 42 42 H 1.08000 * 120.00058 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.00160 * 179.71673 * 25 24 23 44 44 H 1.08004 * 120.00104 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.00279 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1345 -0.8552 1.4811 5 8 1.5479 -0.2495 2.6248 6 8 3.5495 -0.9574 1.3990 7 6 1.4227 -2.5109 1.2747 8 6 1.8330 -3.3932 2.4554 9 7 1.2586 -4.7305 2.2884 10 6 1.4886 -5.6831 3.2138 11 8 2.1714 -5.4333 4.1844 12 6 0.8972 -7.0586 3.0423 13 1 -0.1020 -6.9738 2.6149 14 6 1.7708 -7.8696 2.1201 15 1 2.8219 -7.9886 2.3381 16 6 1.2282 -8.4595 0.9982 17 7 2.0045 -9.0995 0.1512 18 14 -0.6094 -8.3498 0.6814 19 1 -0.9204 -7.0610 0.0126 20 1 -1.0292 -9.4748 -0.1923 21 1 -1.3398 -8.4264 1.9722 22 6 0.8137 -7.7403 4.3836 23 6 -0.4197 -8.0014 4.9506 24 6 -0.4963 -8.6272 6.1808 25 6 0.6604 -8.9927 6.8436 26 6 1.8938 -8.7319 6.2764 27 6 1.9704 -8.1044 5.0471 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.7892 -2.9509 0.3472 36 1 0.3358 -2.4370 1.2373 37 1 1.4662 -2.9530 3.3826 38 1 2.9198 -3.4671 2.4933 39 1 0.7127 -4.9304 1.5118 40 1 1.6227 -9.5148 -0.6378 41 1 -1.3234 -7.7166 4.4325 42 1 -1.4599 -8.8309 6.6239 43 1 0.6006 -9.4775 7.8068 44 1 2.7976 -9.0170 6.7944 45 1 2.9341 -7.9002 4.6041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468681128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:08 Heat of formation + Delta-G solvation = -93.074213 kcal Electronic energy + Delta-G solvation = -27208.079886 eV Core-core repulsion = 23317.594220 eV Total energy + Delta-G solvation = -3890.485666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.39326 -37.98390 -37.21170 -36.24982 -35.45874 -35.00186 -33.66630 -31.62950 -30.77508 -30.14404 -27.98680 -27.59823 -24.33120 -23.34795 -22.46432 -21.85786 -20.99750 -19.59464 -18.87408 -17.42221 -17.21372 -16.64312 -16.39065 -16.14817 -15.78834 -15.45409 -15.22559 -14.79904 -14.57129 -14.22400 -13.88616 -13.73751 -13.55416 -13.35427 -13.05741 -12.79913 -12.77526 -12.62290 -12.34835 -12.26964 -12.16589 -12.12119 -12.01546 -11.86462 -11.84716 -11.61694 -11.18435 -11.15883 -11.14373 -10.52579 -10.50258 -10.18206 -10.05544 -9.56625 -9.10905 -8.76685 -8.60046 -8.14960 -7.84844 -6.36629 -4.39491 -0.31939 2.12311 2.19773 2.46708 3.00490 3.15863 3.16498 3.28551 3.54269 3.69931 3.88060 4.11745 4.12470 4.18650 4.34511 4.61207 4.62078 4.65198 4.98558 5.01722 5.05222 5.16079 5.22636 5.32003 5.52397 5.56737 5.57141 5.58538 5.62270 5.67584 5.73264 5.94914 6.07842 6.13387 6.32452 6.39074 6.71303 6.83718 6.90111 7.15075 7.22067 7.25484 7.56946 7.77555 8.04945 8.23850 8.67814 9.01785 9.19925 10.74812 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.003165 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.565733 B = 8843.319235 C = 9960.725598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.576 4.576 3 C -0.142 4.142 4 S 2.423 3.577 5 O -0.931 6.931 6 O -0.931 6.931 7 C -0.633 4.633 8 C 0.135 3.865 9 N -0.730 5.730 10 C 0.530 3.470 11 O -0.553 6.553 12 C 0.033 3.967 13 H 0.061 0.939 14 C -0.506 4.506 15 H 0.085 0.915 16 C 0.081 3.919 17 N -0.880 5.880 18 Si 0.868 3.132 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.033 4.033 23 C -0.133 4.133 24 C -0.131 4.131 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.069 4.069 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.138 0.862 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.401 0.599 40 H 0.270 0.730 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 15.088 -1.709 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.685 4.685 3 C -0.201 4.201 4 S 2.604 3.396 5 O -0.928 6.928 6 O -0.928 6.928 7 C -0.761 4.761 8 C 0.010 3.990 9 N -0.384 5.384 10 C 0.319 3.681 11 O -0.430 6.430 12 C 0.012 3.988 13 H 0.079 0.921 14 C -0.543 4.543 15 H 0.103 0.897 16 C -0.123 4.123 17 N -0.515 5.515 18 Si 0.694 3.306 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.034 4.034 23 C -0.151 4.151 24 C -0.149 4.149 25 C -0.159 4.159 26 C -0.149 4.149 27 C -0.087 4.087 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.156 0.844 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.236 0.764 40 H 0.080 0.920 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.219 15.475 -0.518 16.340 hybrid contribution -1.700 -0.576 -1.658 2.444 sum -6.920 14.900 -2.176 16.571 Atomic orbital electron populations 1.21754 0.89956 1.03847 1.04988 1.30059 1.07003 1.10001 1.21455 1.21632 1.02155 0.91657 1.04616 1.08163 0.76190 0.77717 0.77546 1.93583 1.79288 1.74510 1.45398 1.93608 1.26824 1.85785 1.86611 1.30683 1.14259 1.22130 1.09017 1.20771 0.99935 0.83775 0.94522 1.45912 1.55209 1.10167 1.27151 1.21625 0.79822 0.86136 0.80479 1.90593 1.39847 1.81702 1.30887 1.18359 0.98185 0.89259 0.93043 0.92099 1.20576 0.96846 1.31115 1.05780 0.89684 1.25067 0.97761 0.94342 0.95176 1.69859 1.35500 1.34193 1.11982 0.86986 0.86151 0.78470 0.78992 1.19785 1.20826 1.18410 1.19955 0.92571 0.96365 0.94540 1.20993 0.97079 1.01255 0.95806 1.20882 0.97655 1.00681 0.95718 1.20891 0.92912 1.02395 0.99709 1.21066 0.97074 1.00365 0.96399 1.20943 0.98862 0.95330 0.93564 0.90281 0.90235 0.90978 0.84389 0.90753 0.90053 0.90758 0.83955 0.84227 0.90419 0.90244 0.76438 0.92017 0.87230 0.87225 0.87289 0.87026 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.94 37.15 0.33 -0.47 16 2 C -0.58 -3.77 3.31 -26.74 -0.09 -3.86 16 3 C -0.14 -0.92 9.20 37.16 0.34 -0.58 16 4 S 2.42 25.03 4.24 -107.50 -0.46 24.58 16 5 O -0.93 -12.32 17.91 -57.83 -1.04 -13.35 16 6 O -0.93 -13.10 18.10 -57.83 -1.05 -14.15 16 7 C -0.63 -6.18 5.47 37.15 0.20 -5.98 16 8 C 0.14 2.04 5.68 -4.04 -0.02 2.02 16 9 N -0.73 -12.85 5.56 -60.30 -0.34 -13.19 16 10 C 0.53 11.53 6.93 -10.98 -0.08 11.46 16 11 O -0.55 -13.33 15.23 5.56 0.08 -13.24 16 12 C 0.03 0.75 2.22 -94.08 -0.21 0.54 16 13 H 0.06 1.28 4.57 -51.93 -0.24 1.05 16 14 C -0.51 -13.07 8.24 -34.44 -0.28 -13.35 16 15 H 0.09 2.47 7.69 -52.49 -0.40 2.06 16 16 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.88 -24.55 13.96 55.43 0.77 -23.77 16 18 Si 0.87 18.80 26.93 -169.99 -4.58 14.22 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.26 -5.44 6.81 56.52 0.39 -5.06 16 22 C -0.03 -0.74 4.53 -104.63 -0.47 -1.21 16 23 C -0.13 -2.62 9.67 -39.59 -0.38 -3.01 16 24 C -0.13 -2.29 10.05 -39.59 -0.40 -2.69 16 25 C -0.14 -2.41 10.05 -39.58 -0.40 -2.81 16 26 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 27 C -0.07 -1.50 8.05 -39.58 -0.32 -1.82 16 28 H 0.08 0.45 8.06 -51.93 -0.42 0.03 16 29 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.07 0.29 6.55 -51.93 -0.34 -0.05 16 31 H 0.14 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.14 1.11 8.14 -51.92 -0.42 0.68 16 36 H 0.14 0.95 6.87 -51.92 -0.36 0.60 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.40 6.21 8.47 -40.82 -0.35 5.86 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.11 1.97 7.96 -52.49 -0.42 1.55 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 45 H 0.12 2.79 7.44 -52.48 -0.39 2.40 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -35.53 386.03 -9.76 -45.29 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.71 Total: 10.40 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -2.27 Total: -22.60 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.44 Total: -36.96 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -2.00 Total: -40.74 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.58 Total: 14.22 kcal Atomic # 16 Polarization: 25.03 SS G_CDS: -0.46 Total: 24.58 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.53 -9.76 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468681128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.787 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds