Wall clock time and date at job start Tue Mar 31 2020 23:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46939 * 2 1 4 4 S 1.81395 * 109.47318 * 119.99845 * 2 1 3 5 5 O 1.42097 * 108.57687 * 305.51617 * 4 2 1 6 6 O 1.42097 * 108.57678 * 174.48708 * 4 2 1 7 7 C 1.81406 * 101.91958 * 60.00456 * 4 2 1 8 8 C 1.53001 * 109.46673 * 180.02562 * 7 4 2 9 9 N 1.46507 * 109.46597 * 179.97438 * 8 7 4 10 10 C 1.34780 * 119.99715 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99956 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99507 * 180.02562 * 10 9 8 13 13 H 1.08993 * 109.47358 * 60.00627 * 12 10 9 14 14 C 1.50694 * 109.47557 * 300.00244 * 12 10 9 15 15 H 1.08005 * 119.99844 * 325.10536 * 14 12 10 16 16 C 1.37873 * 120.00327 * 144.82716 * 14 12 10 17 17 N 1.31518 * 120.00024 * 184.98561 * 16 14 12 18 18 Si 1.86799 * 119.99793 * 4.97779 * 16 14 12 19 19 H 1.48506 * 109.47105 * 84.67291 * 18 16 14 20 20 H 1.48502 * 109.47297 * 204.67187 * 18 16 14 21 21 H 1.48503 * 109.47165 * 324.67412 * 18 16 14 22 22 C 1.50706 * 109.46837 * 180.02562 * 12 10 9 23 23 C 1.38236 * 119.99842 * 65.01200 * 22 12 10 24 24 C 1.38235 * 119.99754 * 179.80983 * 23 22 12 25 25 C 1.38239 * 119.99940 * 0.40204 * 24 23 22 26 26 C 1.38234 * 120.00038 * 359.85501 * 25 24 23 27 27 C 1.38228 * 119.99904 * 245.29236 * 22 12 10 28 28 H 1.09000 * 109.46884 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47537 * 300.00088 * 1 2 3 30 30 H 1.09004 * 109.47171 * 60.00175 * 1 2 3 31 31 H 1.09003 * 109.47402 * 240.00619 * 2 1 3 32 32 H 1.08992 * 109.46959 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47046 * 299.99902 * 3 2 1 34 34 H 1.08997 * 109.47078 * 59.99631 * 3 2 1 35 35 H 1.08990 * 109.47008 * 59.99815 * 7 4 2 36 36 H 1.08999 * 109.46682 * 299.99475 * 7 4 2 37 37 H 1.08995 * 109.47454 * 60.00527 * 8 7 4 38 38 H 1.08999 * 109.47024 * 299.99126 * 8 7 4 39 39 H 0.97000 * 120.00262 * 0.02562 * 9 8 7 40 40 H 0.97005 * 119.99741 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.00365 * 0.02562 * 23 22 12 42 42 H 1.07998 * 120.00073 * 180.23745 * 24 23 22 43 43 H 1.08002 * 119.99764 * 179.83407 * 25 24 23 44 44 H 1.07999 * 119.99887 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.00085 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 2.1347 -0.8551 1.4811 5 8 1.5479 -0.2494 2.6248 6 8 3.5496 -0.9570 1.3989 7 6 1.4230 -2.5109 1.2746 8 6 1.8334 -3.3931 2.4554 9 7 1.2581 -4.7302 2.2889 10 6 1.4880 -5.6827 3.2144 11 8 2.1707 -5.4327 4.1851 12 6 0.8967 -7.0582 3.0428 13 1 1.2633 -7.4982 2.1155 14 6 -0.6059 -6.9562 2.9908 15 1 -1.1178 -6.2153 3.5870 16 6 -1.3267 -7.8048 2.1777 17 7 -2.6275 -7.6525 2.0569 18 14 -0.4559 -9.1708 1.2477 19 1 -0.3124 -10.3569 2.1298 20 1 -1.2514 -9.5388 0.0489 21 1 0.8886 -8.7028 0.8250 22 6 1.3008 -7.9272 4.2059 23 6 0.8583 -7.6259 5.4803 24 6 1.2257 -8.4254 6.5465 25 6 2.0424 -9.5213 6.3395 26 6 2.4893 -9.8195 5.0658 27 6 2.1186 -9.0222 3.9990 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.7895 -2.9507 0.3472 36 1 0.3362 -2.4370 1.2372 37 1 1.4665 -2.9530 3.3826 38 1 2.9202 -3.4670 2.4932 39 1 0.7124 -4.9302 1.5123 40 1 -3.1346 -8.2494 1.4846 41 1 0.2226 -6.7680 5.6426 42 1 0.8768 -8.1922 7.5417 43 1 2.3317 -10.1443 7.1729 44 1 3.1277 -10.6754 4.9041 45 1 2.4677 -9.2552 3.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001468681129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:11 Heat of formation + Delta-G solvation = -118.313538 kcal Electronic energy + Delta-G solvation = -27218.646365 eV Core-core repulsion = 23327.066239 eV Total energy + Delta-G solvation = -3891.580126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.03480 -39.49117 -38.12387 -37.16514 -36.38280 -35.95905 -35.54027 -33.39180 -31.96282 -31.63605 -29.40062 -28.24473 -25.82931 -24.64024 -23.40784 -23.21973 -22.46517 -21.11681 -19.72232 -19.12248 -18.25871 -18.10178 -17.63815 -17.29392 -16.86853 -16.63820 -16.43352 -16.17047 -15.84837 -15.49077 -15.35091 -14.88832 -14.72870 -14.34737 -14.24709 -14.15000 -14.08910 -13.79412 -13.50342 -13.35932 -13.23702 -13.22090 -13.06483 -13.01950 -12.86391 -12.72689 -12.32726 -12.32154 -12.04407 -12.03048 -11.93898 -11.62764 -11.41841 -11.17062 -10.91422 -10.55767 -10.08340 -9.65343 -9.38426 -8.34549 -6.43287 -1.10180 0.63276 0.69534 1.32757 1.41790 1.44989 1.72038 1.79508 2.29374 2.30226 2.68977 2.96398 2.98538 3.15364 3.38640 3.60494 3.61776 3.84107 4.08545 4.19918 4.21336 4.21715 4.28989 4.36680 4.38755 4.47808 4.58647 4.63019 4.66836 4.69632 4.80719 4.81176 4.88980 4.89548 5.13166 5.18614 5.26390 5.31062 5.37724 5.48727 5.68802 5.73090 5.93617 6.19897 6.29709 6.59385 6.63494 7.21974 7.38092 8.79627 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.003067 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.999698 B = 9126.912841 C =10313.042659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.541 4.541 3 C -0.156 4.156 4 S 2.414 3.586 5 O -0.976 6.976 6 O -0.976 6.976 7 C -0.624 4.624 8 C 0.124 3.876 9 N -0.711 5.711 10 C 0.527 3.473 11 O -0.586 6.586 12 C 0.023 3.977 13 H 0.085 0.915 14 C -0.503 4.503 15 H 0.039 0.961 16 C 0.041 3.959 17 N -0.928 5.928 18 Si 0.921 3.079 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.232 1.232 22 C -0.059 4.059 23 C -0.105 4.105 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.125 4.125 27 C -0.152 4.152 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.174 0.826 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.177 0.823 36 H 0.165 0.835 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.418 0.582 40 H 0.271 0.729 41 H 0.089 0.911 42 H 0.134 0.866 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.583 9.573 -8.948 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.654 4.654 3 C -0.214 4.214 4 S 2.600 3.400 5 O -0.973 6.973 6 O -0.973 6.973 7 C -0.752 4.752 8 C -0.001 4.001 9 N -0.364 5.364 10 C 0.316 3.684 11 O -0.467 6.467 12 C 0.001 3.999 13 H 0.103 0.897 14 C -0.540 4.540 15 H 0.057 0.943 16 C -0.160 4.160 17 N -0.565 5.565 18 Si 0.745 3.255 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.156 1.156 22 C -0.060 4.060 23 C -0.124 4.124 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.170 4.170 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.191 0.809 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.086 0.914 35 H 0.195 0.805 36 H 0.183 0.817 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.255 0.745 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.151 0.849 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.438 10.023 -7.646 15.170 hybrid contribution -1.017 -0.810 -0.992 1.636 sum 7.421 9.213 -8.638 14.648 Atomic orbital electron populations 1.21947 0.88882 1.05312 1.05645 1.29798 1.07621 1.09414 1.18590 1.21823 1.02247 0.91672 1.05669 1.08204 0.75210 0.77880 0.78696 1.93533 1.79486 1.75232 1.49016 1.93535 1.29570 1.86448 1.87732 1.30625 1.16293 1.20531 1.07782 1.20896 0.98977 0.83416 0.96814 1.45726 1.53802 1.10278 1.26640 1.21198 0.77924 0.87911 0.81417 1.90586 1.41281 1.83129 1.31716 1.18515 0.96412 0.89259 0.95698 0.89704 1.20434 0.87986 1.19279 1.26314 0.94293 1.25656 0.95154 0.98631 0.96552 1.69990 1.07908 1.39131 1.39515 0.86133 0.80344 0.80399 0.78663 1.19663 1.20688 1.15551 1.20126 0.94608 0.96062 0.95177 1.20843 0.99168 0.98979 0.93382 1.21360 0.99145 0.95982 0.98726 1.21355 0.98563 0.97668 0.97862 1.21378 1.00420 0.99916 0.92556 1.21254 0.99322 0.96393 1.00061 0.89398 0.91245 0.88007 0.80862 0.90914 0.87357 0.91438 0.80530 0.81680 0.92257 0.90974 0.74508 0.91968 0.89313 0.84859 0.83221 0.83317 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.94 71.98 0.64 -0.80 16 2 C -0.54 -5.63 3.31 30.60 0.10 -5.53 16 3 C -0.16 -1.69 9.20 71.98 0.66 -1.03 16 4 S 2.41 49.12 4.24 -56.49 -0.24 48.89 16 5 O -0.98 -28.05 17.91 -127.37 -2.28 -30.33 16 6 O -0.98 -26.76 18.10 -127.37 -2.30 -29.06 16 7 C -0.62 -11.40 5.47 71.98 0.39 -11.01 16 8 C 0.12 3.79 5.68 86.38 0.49 4.28 16 9 N -0.71 -25.24 5.46 -463.05 -2.53 -27.77 16 10 C 0.53 23.36 7.04 87.66 0.62 23.98 16 11 O -0.59 -29.10 15.37 -3.03 -0.05 -29.15 16 12 C 0.02 1.02 1.90 -13.03 -0.02 1.00 16 13 H 0.09 3.58 4.87 -2.39 -0.01 3.57 16 14 C -0.50 -26.07 8.06 25.60 0.21 -25.86 16 15 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 16 C 0.04 2.12 5.47 84.65 0.46 2.59 16 17 N -0.93 -52.26 13.96 21.45 0.30 -51.96 16 18 Si 0.92 39.15 27.23 68.60 1.87 41.02 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.23 -8.65 6.06 99.48 0.60 -8.05 16 22 C -0.06 -2.64 4.11 -19.87 -0.08 -2.72 16 23 C -0.11 -4.76 8.25 22.27 0.18 -4.58 16 24 C -0.13 -4.99 10.05 22.27 0.22 -4.77 16 25 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 26 C -0.12 -4.09 10.05 22.27 0.22 -3.86 16 27 C -0.15 -5.90 9.50 22.27 0.21 -5.69 16 28 H 0.09 0.57 6.56 -2.39 -0.02 0.55 16 29 H 0.07 0.81 8.06 -2.39 -0.02 0.79 16 30 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.17 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.18 1.86 8.14 -2.40 -0.02 1.85 16 36 H 0.17 2.32 6.87 -2.39 -0.02 2.30 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.42 13.02 8.36 -92.71 -0.77 12.24 16 40 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 41 H 0.09 4.36 7.93 -2.91 -0.02 4.33 16 42 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 43 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 44 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 45 H 0.12 4.27 7.95 -2.91 -0.02 4.24 16 Total: -1.00 -81.35 385.88 -0.58 -81.93 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.11 Total: 34.60 kcal Atomic # 6 Polarization: -42.70 SS G_CDS: 4.54 Total: -38.16 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -2.23 Total: -79.73 kcal Atomic # 8 Polarization: -83.91 SS G_CDS: -4.63 Total: -88.54 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.87 Total: 41.02 kcal Atomic # 16 Polarization: 49.12 SS G_CDS: -0.24 Total: 48.89 kcal Total: -81.35 -0.58 -81.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468681129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.389 kcal (2) G-P(sol) polarization free energy of solvation -81.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds