Wall clock time and date at job start Tue Mar 31 2020 23:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47502 * 2 1 4 4 C 1.54799 * 109.47343 * 239.99768 * 2 1 3 5 5 N 1.45131 * 109.54154 * 172.11883 * 4 2 1 6 6 S 1.65603 * 118.75545 * 269.26800 * 5 4 2 7 7 O 1.42099 * 106.40236 * 23.55795 * 6 5 4 8 8 O 1.42094 * 106.39860 * 156.48053 * 6 5 4 9 9 C 1.76202 * 107.21623 * 270.01889 * 6 5 4 10 10 C 1.38655 * 119.87520 * 269.72828 * 9 6 5 11 11 C 1.38619 * 120.49717 * 179.72618 * 10 9 6 12 12 C 1.37636 * 120.24680 * 0.54622 * 11 10 9 13 13 C 1.40695 * 119.74786 * 359.73293 * 12 11 10 14 14 C 1.41395 * 120.24305 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99920 * 155.18702 * 14 13 12 16 16 C 1.39943 * 119.99941 * 335.17794 * 14 13 12 17 17 N 1.30828 * 120.00216 * 342.36047 * 16 14 13 18 18 Si 1.86801 * 120.00093 * 162.35861 * 16 14 13 19 19 H 1.48498 * 109.46972 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47414 * 120.00022 * 18 16 14 21 21 H 1.48502 * 109.47160 * 240.00216 * 18 16 14 22 22 C 1.37599 * 119.87547 * 90.00199 * 9 6 5 23 23 C 1.47501 * 122.48371 * 89.28578 * 5 4 2 24 24 H 1.08998 * 109.16709 * 197.97271 * 23 5 4 25 25 C 1.53007 * 109.12174 * 78.74681 * 23 5 4 26 26 C 1.53567 * 111.02886 * 318.37924 * 23 5 4 27 27 C 1.51536 * 109.58151 * 320.01642 * 26 23 5 28 28 O 1.38020 * 109.46747 * 119.99249 * 2 1 3 29 29 H 1.08998 * 109.46663 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47244 * 300.00338 * 1 2 3 31 31 H 1.09005 * 109.46693 * 60.00310 * 1 2 3 32 32 H 1.09000 * 109.45844 * 52.09479 * 4 2 1 33 33 H 1.09003 * 109.44904 * 292.12855 * 4 2 1 34 34 H 1.07991 * 119.74888 * 359.97438 * 10 9 6 35 35 H 1.08003 * 119.87553 * 180.28201 * 11 10 9 36 36 H 1.08009 * 120.12468 * 179.70652 * 12 11 10 37 37 H 0.96996 * 119.99977 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.12600 * 0.02562 * 22 9 6 39 39 H 1.09000 * 109.47195 * 298.48831 * 25 23 5 40 40 H 1.09003 * 109.47217 * 58.49265 * 25 23 5 41 41 H 1.09004 * 109.47014 * 178.49456 * 25 23 5 42 42 H 1.08996 * 109.45795 * 80.05248 * 26 23 5 43 43 H 1.09008 * 109.45159 * 199.98364 * 26 23 5 44 44 H 1.09002 * 109.58921 * 211.18858 * 27 26 23 45 45 H 1.09003 * 109.58500 * 331.62423 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0461 -0.7298 -1.2639 5 7 3.4852 -0.5704 -1.3629 6 16 4.0875 0.7192 -2.2094 7 8 3.0677 1.7087 -2.2126 8 8 5.3958 0.9532 -1.7067 9 6 4.2825 0.2001 -3.8818 10 6 5.4808 -0.3616 -4.2954 11 6 5.6463 -0.7797 -5.6067 12 6 4.6240 -0.6307 -6.5161 13 6 3.4056 -0.0567 -6.1091 14 6 2.3486 0.1018 -7.0347 15 1 1.3279 0.1519 -6.6854 16 6 2.6251 0.1940 -8.4035 17 7 3.8359 0.4795 -8.8085 18 14 1.2654 -0.0907 -9.6523 19 1 -0.0026 -0.3964 -8.9424 20 1 1.0887 1.1304 -10.4787 21 1 1.6294 -1.2331 -10.5286 22 6 3.2469 0.3588 -4.7739 23 6 4.4315 -1.5138 -0.7384 24 1 5.4112 -1.0418 -0.6646 25 6 4.5415 -2.7653 -1.6118 26 6 3.9599 -1.9189 0.6658 27 6 3.3879 -0.7098 1.3779 28 8 1.9900 -0.6505 1.1270 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.5718 -0.3039 -2.1481 33 1 1.8020 -1.7900 -1.1959 34 1 6.2899 -0.4779 -3.5897 35 1 6.5824 -1.2200 -5.9169 36 1 4.7567 -0.9528 -7.5385 37 1 4.0276 0.5430 -9.7572 38 1 2.3161 0.8010 -4.4508 39 1 3.5669 -3.2488 -1.6782 40 1 4.8761 -2.4833 -2.6102 41 1 5.2600 -3.4553 -1.1692 42 1 3.1922 -2.6883 0.5831 43 1 4.8045 -2.3090 1.2340 44 1 3.5633 -0.8002 2.4500 45 1 3.8653 0.1952 1.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475792742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:46 Heat of formation + Delta-G solvation = -104.201080 kcal Electronic energy + Delta-G solvation = -28989.114528 eV Core-core repulsion = 25098.146365 eV Total energy + Delta-G solvation = -3890.968164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.80095 -37.67714 -36.91466 -36.14324 -35.35186 -33.87413 -33.77050 -30.39390 -30.11260 -29.84490 -29.07993 -25.86966 -25.51211 -23.83614 -21.93987 -21.47577 -21.01539 -20.63361 -18.65514 -18.01654 -17.31529 -16.74215 -16.43739 -16.00887 -15.60741 -15.20259 -14.84041 -14.73112 -14.40065 -13.57230 -13.55634 -13.44755 -13.36721 -13.01745 -12.66562 -12.60830 -12.35130 -12.16483 -11.99924 -11.90558 -11.75116 -11.64857 -11.55674 -11.50509 -11.42943 -11.37058 -11.07992 -11.01153 -10.91310 -10.61732 -10.56287 -10.44282 -9.82217 -9.73021 -9.52559 -9.38147 -8.71900 -8.06152 -7.73034 -6.94984 -4.56483 0.91845 2.15987 2.59547 2.98440 3.01482 3.04709 3.35663 3.65844 3.80764 4.18758 4.37022 4.60744 4.70458 4.79336 4.96685 5.08592 5.10828 5.21933 5.33306 5.37701 5.39762 5.48706 5.52660 5.68003 5.73863 5.76055 5.84134 5.88924 5.95102 6.00624 6.11338 6.13666 6.19765 6.28384 6.37999 6.60984 6.69759 6.74667 6.91592 7.02116 7.18680 7.34738 7.63150 7.69058 7.77246 7.90983 8.37037 8.64138 8.68658 10.00773 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.003848 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.934874 B = 7274.045155 C = 8020.733811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.080 3.920 3 H 0.057 0.943 4 C 0.091 3.909 5 N -0.993 5.993 6 S 2.676 3.324 7 O -0.967 6.967 8 O -0.974 6.974 9 C -0.629 4.629 10 C -0.147 4.147 11 C -0.120 4.120 12 C -0.117 4.117 13 C 0.093 3.907 14 C -0.460 4.460 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.793 5.793 18 Si 0.911 3.089 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.271 1.271 22 C -0.126 4.126 23 C 0.138 3.862 24 H 0.103 0.897 25 C -0.168 4.168 26 C -0.153 4.153 27 C 0.075 3.925 28 O -0.387 6.387 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.283 0.717 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -6.023 13.216 14.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.020 3.980 3 H 0.075 0.925 4 C -0.035 4.035 5 N -0.829 5.829 6 S 2.774 3.226 7 O -0.957 6.957 8 O -0.965 6.965 9 C -0.721 4.721 10 C -0.168 4.168 11 C -0.140 4.140 12 C -0.137 4.137 13 C 0.089 3.911 14 C -0.490 4.490 15 H 0.101 0.899 16 C -0.143 4.143 17 N -0.418 5.418 18 Si 0.735 3.265 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.196 1.196 22 C -0.148 4.148 23 C 0.033 3.967 24 H 0.121 0.879 25 C -0.227 4.227 26 C -0.192 4.192 27 C -0.001 4.001 28 O -0.306 6.306 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.640 -5.232 13.503 14.574 hybrid contribution -0.191 -0.450 -1.697 1.766 sum -1.831 -5.683 11.806 13.230 Atomic orbital electron populations 1.21717 0.92351 1.02847 1.02879 1.22122 0.95205 0.95384 0.85305 0.92483 1.22155 0.79399 1.02608 0.99351 1.57520 1.12574 1.45181 1.67586 1.02112 0.72916 0.72997 0.74536 1.93527 1.58903 1.55691 1.87623 1.93485 1.39014 1.83950 1.80044 1.29755 1.02740 1.18515 1.21132 1.20044 0.95006 1.04996 0.96742 1.20809 0.98208 1.01345 0.93627 1.21636 0.93896 0.98980 0.99184 1.17676 0.93106 0.89101 0.91216 1.19633 0.94705 1.44019 0.90614 0.89907 1.25939 0.96631 0.91918 0.99840 1.69788 1.21364 1.32922 1.17761 0.86205 0.81529 0.78881 0.79862 1.18219 1.19809 1.19603 1.20726 0.96695 1.02556 0.94789 1.21326 0.92444 0.90477 0.92440 0.87912 1.22272 1.02296 0.97184 1.00941 1.22439 1.02008 0.99589 0.95169 1.22143 0.81052 0.97392 0.99507 1.86205 1.23288 1.77184 1.43905 0.91790 0.91763 0.90476 0.89161 0.89585 0.87734 0.88389 0.85780 0.90576 0.87193 0.92157 0.91190 0.91707 0.90026 0.89839 0.89249 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.55 37.16 0.36 -1.16 16 2 C 0.08 1.06 3.22 -25.78 -0.08 0.97 16 3 H 0.06 0.85 7.62 -51.93 -0.40 0.45 16 4 C 0.09 1.25 4.68 -3.83 -0.02 1.23 16 5 N -0.99 -14.92 2.09 -106.23 -0.22 -15.14 16 6 S 2.68 51.18 5.57 -107.50 -0.60 50.58 16 7 O -0.97 -20.28 15.65 -57.17 -0.89 -21.18 16 8 O -0.97 -19.91 15.65 -57.17 -0.89 -20.80 16 9 C -0.63 -13.72 5.97 -39.66 -0.24 -13.95 16 10 C -0.15 -3.16 8.99 -39.29 -0.35 -3.51 16 11 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 12 C -0.12 -2.88 8.70 -38.87 -0.34 -3.22 16 13 C 0.09 2.36 5.57 -106.83 -0.60 1.77 16 14 C -0.46 -11.67 9.05 -37.74 -0.34 -12.01 16 15 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 16 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 17 N -0.79 -19.67 10.97 55.55 0.61 -19.06 16 18 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 19 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 C -0.13 -3.00 9.26 -38.87 -0.36 -3.36 16 23 C 0.14 1.76 2.80 -67.09 -0.19 1.57 16 24 H 0.10 1.37 6.69 -51.93 -0.35 1.02 16 25 C -0.17 -2.01 9.37 37.16 0.35 -1.66 16 26 C -0.15 -1.56 5.16 -27.18 -0.14 -1.70 16 27 C 0.08 0.85 6.38 36.42 0.23 1.08 16 28 O -0.39 -4.95 9.46 -26.55 -0.25 -5.20 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.28 7.64 -51.93 -0.40 0.89 16 33 H 0.09 1.04 7.89 -51.93 -0.41 0.63 16 34 H 0.10 2.04 7.59 -52.49 -0.40 1.64 16 35 H 0.10 1.90 8.06 -52.48 -0.42 1.47 16 36 H 0.12 3.11 6.18 -52.48 -0.32 2.79 16 37 H 0.28 6.34 8.30 -40.82 -0.34 6.01 16 38 H 0.11 2.49 7.60 -52.49 -0.40 2.10 16 39 H 0.06 0.69 7.90 -51.93 -0.41 0.28 16 40 H 0.07 0.98 7.59 -51.93 -0.39 0.59 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.82 7.84 -51.93 -0.41 0.42 16 43 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.64 7.40 -51.93 -0.38 0.25 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -29.60 369.23 -10.70 -40.30 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.78 Total: 7.42 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: -2.20 Total: -35.31 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.39 Total: -34.20 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -2.04 Total: -47.18 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 51.18 SS G_CDS: -0.60 Total: 50.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.60 -10.70 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475792742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.901 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds