Wall clock time and date at job start Tue Mar 31 2020 23:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47502 * 2 1 4 4 C 1.54799 * 109.47343 * 239.99768 * 2 1 3 5 5 N 1.45131 * 109.54154 * 172.11883 * 4 2 1 6 6 S 1.65603 * 118.75545 * 269.26800 * 5 4 2 7 7 O 1.42099 * 106.40236 * 23.55795 * 6 5 4 8 8 O 1.42094 * 106.39860 * 156.48053 * 6 5 4 9 9 C 1.76202 * 107.21623 * 270.01889 * 6 5 4 10 10 C 1.38655 * 119.87520 * 269.72828 * 9 6 5 11 11 C 1.38619 * 120.49717 * 179.72618 * 10 9 6 12 12 C 1.37636 * 120.24680 * 0.54622 * 11 10 9 13 13 C 1.40695 * 119.74786 * 359.73293 * 12 11 10 14 14 C 1.41395 * 120.24305 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99920 * 155.18702 * 14 13 12 16 16 C 1.39943 * 119.99941 * 335.17794 * 14 13 12 17 17 N 1.30828 * 120.00216 * 342.36047 * 16 14 13 18 18 Si 1.86801 * 120.00093 * 162.35861 * 16 14 13 19 19 H 1.48498 * 109.46972 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47414 * 120.00022 * 18 16 14 21 21 H 1.48502 * 109.47160 * 240.00216 * 18 16 14 22 22 C 1.37599 * 119.87547 * 90.00199 * 9 6 5 23 23 C 1.47501 * 122.48371 * 89.28578 * 5 4 2 24 24 H 1.08998 * 109.16709 * 197.97271 * 23 5 4 25 25 C 1.53007 * 109.12174 * 78.74681 * 23 5 4 26 26 C 1.53567 * 111.02886 * 318.37924 * 23 5 4 27 27 C 1.51536 * 109.58151 * 320.01642 * 26 23 5 28 28 O 1.38020 * 109.46747 * 119.99249 * 2 1 3 29 29 H 1.08998 * 109.46663 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47244 * 300.00338 * 1 2 3 31 31 H 1.09005 * 109.46693 * 60.00310 * 1 2 3 32 32 H 1.09000 * 109.45844 * 52.09479 * 4 2 1 33 33 H 1.09003 * 109.44904 * 292.12855 * 4 2 1 34 34 H 1.07991 * 119.74888 * 359.97438 * 10 9 6 35 35 H 1.08003 * 119.87553 * 180.28201 * 11 10 9 36 36 H 1.08009 * 120.12468 * 179.70652 * 12 11 10 37 37 H 0.96996 * 119.99977 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.12600 * 0.02562 * 22 9 6 39 39 H 1.09000 * 109.47195 * 298.48831 * 25 23 5 40 40 H 1.09003 * 109.47217 * 58.49265 * 25 23 5 41 41 H 1.09004 * 109.47014 * 178.49456 * 25 23 5 42 42 H 1.08996 * 109.45795 * 80.05248 * 26 23 5 43 43 H 1.09008 * 109.45159 * 199.98364 * 26 23 5 44 44 H 1.09002 * 109.58921 * 211.18858 * 27 26 23 45 45 H 1.09003 * 109.58500 * 331.62423 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0461 -0.7298 -1.2639 5 7 3.4852 -0.5704 -1.3629 6 16 4.0875 0.7192 -2.2094 7 8 3.0677 1.7087 -2.2126 8 8 5.3958 0.9532 -1.7067 9 6 4.2825 0.2001 -3.8818 10 6 5.4808 -0.3616 -4.2954 11 6 5.6463 -0.7797 -5.6067 12 6 4.6240 -0.6307 -6.5161 13 6 3.4056 -0.0567 -6.1091 14 6 2.3486 0.1018 -7.0347 15 1 1.3279 0.1519 -6.6854 16 6 2.6251 0.1940 -8.4035 17 7 3.8359 0.4795 -8.8085 18 14 1.2654 -0.0907 -9.6523 19 1 -0.0026 -0.3964 -8.9424 20 1 1.0887 1.1304 -10.4787 21 1 1.6294 -1.2331 -10.5286 22 6 3.2469 0.3588 -4.7739 23 6 4.4315 -1.5138 -0.7384 24 1 5.4112 -1.0418 -0.6646 25 6 4.5415 -2.7653 -1.6118 26 6 3.9599 -1.9189 0.6658 27 6 3.3879 -0.7098 1.3779 28 8 1.9900 -0.6505 1.1270 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.5718 -0.3039 -2.1481 33 1 1.8020 -1.7900 -1.1959 34 1 6.2899 -0.4779 -3.5897 35 1 6.5824 -1.2200 -5.9169 36 1 4.7567 -0.9528 -7.5385 37 1 4.0276 0.5430 -9.7572 38 1 2.3161 0.8010 -4.4508 39 1 3.5669 -3.2488 -1.6782 40 1 4.8761 -2.4833 -2.6102 41 1 5.2600 -3.4553 -1.1692 42 1 3.1922 -2.6883 0.5831 43 1 4.8045 -2.3090 1.2340 44 1 3.5633 -0.8002 2.4500 45 1 3.8653 0.1952 1.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475792742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:45 Heat of formation + Delta-G solvation = -121.603078 kcal Electronic energy + Delta-G solvation = -28989.869135 eV Core-core repulsion = 25098.146365 eV Total energy + Delta-G solvation = -3891.722771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.80237 -39.48099 -38.48144 -37.24310 -36.97492 -35.69076 -34.76352 -31.95277 -31.63274 -31.39328 -30.01099 -27.37068 -26.93042 -24.76218 -23.68438 -22.85317 -22.44733 -21.76682 -20.20207 -19.46162 -18.80310 -17.86570 -17.73818 -17.48133 -16.98562 -16.61847 -16.47490 -16.25463 -15.54877 -15.29100 -15.10537 -14.52282 -14.44795 -14.35234 -13.98333 -13.75791 -13.74639 -13.44814 -13.32990 -13.22266 -13.13003 -13.09229 -13.01692 -12.90345 -12.83723 -12.62227 -12.61064 -12.43480 -12.19563 -12.05284 -11.68571 -11.56639 -11.41132 -11.35339 -11.16204 -10.62033 -9.94275 -9.81804 -9.58210 -8.74994 -6.47395 -0.60863 0.37119 0.81296 1.36713 1.43439 1.52155 1.95273 2.16764 2.52653 2.68286 2.74026 3.28198 3.46012 3.61156 3.78830 3.92626 4.07619 4.13075 4.25574 4.26413 4.29228 4.40041 4.49850 4.58486 4.65435 4.73843 4.77138 4.81530 4.84758 4.87228 4.92239 5.00226 5.03404 5.10883 5.15920 5.19094 5.32458 5.33799 5.38194 5.41389 5.53107 5.70357 5.85607 5.91127 6.07552 6.50111 6.66460 6.77779 6.82107 8.23522 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.003848 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.934874 B = 7274.045155 C = 8020.733811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.081 3.919 3 H 0.034 0.966 4 C 0.085 3.915 5 N -0.982 5.982 6 S 2.696 3.304 7 O -0.989 6.989 8 O -0.986 6.986 9 C -0.637 4.637 10 C -0.146 4.146 11 C -0.121 4.121 12 C -0.139 4.139 13 C 0.065 3.935 14 C -0.497 4.497 15 H 0.081 0.919 16 C 0.036 3.964 17 N -0.825 5.825 18 Si 0.984 3.016 19 H -0.256 1.256 20 H -0.267 1.267 21 H -0.261 1.261 22 C -0.145 4.145 23 C 0.128 3.872 24 H 0.097 0.903 25 C -0.166 4.166 26 C -0.143 4.143 27 C 0.065 3.935 28 O -0.389 6.389 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.292 0.708 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 -7.646 14.652 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.021 3.979 3 H 0.052 0.948 4 C -0.041 4.041 5 N -0.820 5.820 6 S 2.792 3.208 7 O -0.979 6.979 8 O -0.977 6.977 9 C -0.726 4.726 10 C -0.167 4.167 11 C -0.140 4.140 12 C -0.159 4.159 13 C 0.061 3.939 14 C -0.526 4.526 15 H 0.099 0.901 16 C -0.179 4.179 17 N -0.451 5.451 18 Si 0.805 3.195 19 H -0.180 1.180 20 H -0.192 1.192 21 H -0.186 1.186 22 C -0.166 4.166 23 C 0.024 3.976 24 H 0.115 0.885 25 C -0.224 4.224 26 C -0.182 4.182 27 C -0.011 4.011 28 O -0.308 6.308 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.809 -6.858 14.919 16.519 hybrid contribution -0.040 0.041 -1.977 1.977 sum -1.848 -6.817 12.942 14.744 Atomic orbital electron populations 1.21731 0.90612 1.03921 1.03330 1.22090 0.96609 0.94045 0.85176 0.94819 1.22363 0.78310 1.03972 0.99411 1.57298 1.13563 1.44815 1.66364 1.01502 0.72377 0.73426 0.73537 1.93492 1.59429 1.57408 1.87612 1.93459 1.39904 1.84611 1.79682 1.30250 1.02207 1.17204 1.22915 1.20385 0.95445 1.03908 0.96919 1.21131 0.98684 1.00681 0.93554 1.21638 0.94646 1.00352 0.99279 1.18030 0.93854 0.89788 0.92190 1.19894 0.94730 1.46000 0.91934 0.90074 1.26782 0.99056 0.90888 1.01172 1.69828 1.23191 1.33315 1.18718 0.85120 0.78297 0.79035 0.77085 1.17954 1.19183 1.18558 1.20795 0.97489 1.03472 0.94824 1.21661 0.91722 0.90069 0.94143 0.88476 1.22261 1.03339 0.97270 0.99561 1.22420 1.03339 0.99137 0.93304 1.22404 0.80240 0.97110 1.01332 1.86214 1.24255 1.76907 1.43470 0.90378 0.90939 0.90478 0.90269 0.87415 0.85431 0.85539 0.86888 0.89737 0.87347 0.91648 0.93702 0.88920 0.89233 0.86677 0.86478 0.94962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.55 71.98 0.69 -2.11 16 2 C 0.08 2.07 3.22 31.21 0.10 2.17 16 3 H 0.03 1.01 7.62 -2.39 -0.02 0.99 16 4 C 0.09 2.27 4.68 87.25 0.41 2.68 16 5 N -0.98 -28.72 2.09 -490.02 -1.02 -29.74 16 6 S 2.70 103.59 5.57 -56.49 -0.31 103.28 16 7 O -0.99 -42.45 15.65 -128.00 -2.00 -44.46 16 8 O -0.99 -39.86 15.65 -128.00 -2.00 -41.86 16 9 C -0.64 -28.16 5.97 22.22 0.13 -28.03 16 10 C -0.15 -6.24 8.99 22.46 0.20 -6.04 16 11 C -0.12 -5.40 10.02 22.22 0.22 -5.18 16 12 C -0.14 -7.07 8.70 22.73 0.20 -6.87 16 13 C 0.06 3.43 5.57 -21.29 -0.12 3.31 16 14 C -0.50 -26.14 9.05 23.46 0.21 -25.93 16 15 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 16 C 0.04 1.78 5.14 85.26 0.44 2.22 16 17 N -0.82 -41.87 10.97 21.83 0.24 -41.63 16 18 Si 0.98 36.90 29.59 68.60 2.03 38.93 16 19 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 20 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 22 C -0.14 -7.14 9.26 22.73 0.21 -6.93 16 23 C 0.13 2.99 2.80 44.99 0.13 3.12 16 24 H 0.10 2.40 6.69 -2.39 -0.02 2.38 16 25 C -0.17 -3.57 9.37 71.98 0.67 -2.90 16 26 C -0.14 -2.43 5.16 30.30 0.16 -2.27 16 27 C 0.07 1.30 6.38 71.50 0.46 1.76 16 28 O -0.39 -9.14 9.46 -117.92 -1.12 -10.25 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.08 2.29 7.64 -2.39 -0.02 2.27 16 33 H 0.11 2.39 7.89 -2.39 -0.02 2.37 16 34 H 0.13 4.81 7.59 -2.92 -0.02 4.78 16 35 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 36 H 0.11 5.89 6.18 -2.91 -0.02 5.87 16 37 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 38 H 0.11 5.20 7.60 -2.91 -0.02 5.18 16 39 H 0.06 1.34 7.90 -2.39 -0.02 1.32 16 40 H 0.04 1.20 7.59 -2.39 -0.02 1.18 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.09 1.44 7.84 -2.39 -0.02 1.42 16 43 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.03 0.77 7.40 -2.39 -0.02 0.75 16 Total: -1.00 -65.47 369.23 0.90 -64.57 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.98 Total: 32.18 kcal Atomic # 6 Polarization: -75.13 SS G_CDS: 4.11 Total: -71.02 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -0.78 Total: -71.37 kcal Atomic # 8 Polarization: -91.45 SS G_CDS: -5.12 Total: -96.57 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Atomic # 16 Polarization: 103.59 SS G_CDS: -0.31 Total: 103.28 kcal Total: -65.47 0.90 -64.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475792742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.029 kcal (2) G-P(sol) polarization free energy of solvation -65.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds