Wall clock time and date at job start Tue Mar 31 2020 22:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47044 * 2 1 4 4 C 1.50702 * 109.46841 * 240.00187 * 2 1 3 5 5 O 1.20829 * 119.99661 * 239.99886 * 4 2 1 6 6 O 1.34224 * 120.00127 * 59.99411 * 4 2 1 7 7 N 1.46493 * 109.47115 * 119.99932 * 2 1 3 8 8 C 1.34968 * 125.97615 * 165.01327 * 7 2 1 9 9 C 1.35239 * 107.85948 * 179.73033 * 8 7 2 10 10 C 1.40400 * 107.86865 * 0.37291 * 9 8 7 11 11 N 1.40194 * 125.97290 * 179.88873 * 10 9 8 12 12 C 1.34777 * 119.99945 * 359.43673 * 11 10 9 13 13 O 1.21593 * 119.99949 * 0.27949 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.27819 * 12 11 10 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47138 * 179.97438 * 15 14 12 17 17 O 1.21294 * 119.99626 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00072 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00087 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00028 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00330 * 179.97438 * 19 18 16 22 22 N 1.31402 * 120.00237 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99503 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47553 * 90.00192 * 23 21 19 25 25 H 1.48503 * 109.46838 * 209.99763 * 23 21 19 26 26 H 1.48496 * 109.47351 * 329.99421 * 23 21 19 27 27 N 1.31208 * 108.05535 * 359.62516 * 10 9 8 28 28 H 1.09009 * 109.46837 * 299.99758 * 1 2 3 29 29 H 1.08995 * 109.47487 * 59.99562 * 1 2 3 30 30 H 1.09001 * 109.47025 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47198 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46841 * 300.00323 * 3 2 1 33 33 H 1.08998 * 109.46994 * 59.99909 * 3 2 1 34 34 H 0.96701 * 117.00039 * 180.02562 * 6 4 2 35 35 H 1.08007 * 126.06490 * 359.97438 * 8 7 2 36 36 H 1.08006 * 126.06729 * 180.24532 * 9 8 7 37 37 H 0.97001 * 120.00268 * 179.71997 * 11 10 9 38 38 H 0.97000 * 119.99549 * 359.97438 * 14 12 11 39 39 H 1.09000 * 109.47602 * 299.99940 * 15 14 12 40 40 H 1.09006 * 109.46868 * 59.99976 * 15 14 12 41 41 H 0.97002 * 120.00040 * 0.02562 * 18 16 15 42 42 H 0.96997 * 120.00234 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7270 -1.6928 -1.1196 6 8 1.7079 -0.2519 -2.4496 7 7 2.0183 -0.6906 1.1961 8 6 3.2774 -1.1331 1.3977 9 6 3.3243 -1.7072 2.6213 10 6 2.0425 -1.6202 3.1874 11 7 1.6654 -2.0998 4.4496 12 6 2.5703 -2.7197 5.2329 13 8 3.7149 -2.8584 4.8469 14 7 2.2064 -3.1858 6.4440 15 6 3.1902 -3.8590 7.2956 16 6 2.5339 -4.2797 8.5854 17 8 1.3597 -4.0410 8.7743 18 7 3.2513 -4.9220 9.5283 19 6 2.6544 -5.3042 10.7019 20 1 1.6091 -5.0910 10.8705 21 6 3.3938 -5.9669 11.6739 22 7 2.8215 -6.3337 12.7984 23 14 5.2015 -6.3363 11.3818 24 1 6.0248 -5.2054 11.8804 25 1 5.5761 -7.5779 12.1053 26 1 5.4407 -6.5195 9.9277 27 7 1.2605 -1.0065 2.3310 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 2.0533 -0.7410 -3.2089 35 1 4.1020 -1.0411 0.7063 36 1 4.1932 -2.1551 3.0806 37 1 0.7523 -1.9893 4.7576 38 1 1.2934 -3.0747 6.7521 39 1 3.5758 -4.7385 6.7800 40 1 4.0114 -3.1757 7.5122 41 1 4.1901 -5.1132 9.3770 42 1 3.3378 -6.7959 13.4771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602839512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:44 Heat of formation + Delta-G solvation = -79.967524 kcal Electronic energy + Delta-G solvation = -28356.021877 eV Core-core repulsion = 23952.104096 eV Total energy + Delta-G solvation = -4403.917781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.77441 -41.61135 -40.97121 -40.13004 -37.38150 -37.02552 -36.28104 -35.52078 -35.32509 -33.81666 -31.37266 -30.52113 -29.18074 -28.46195 -26.33538 -25.64439 -23.48426 -23.11138 -21.54598 -21.41413 -21.04992 -20.49881 -19.45046 -19.07242 -18.69888 -17.72113 -17.45697 -17.11311 -16.93439 -16.89134 -16.68117 -16.07077 -16.03376 -15.68428 -15.47288 -14.98592 -14.87043 -14.65197 -14.31204 -14.11973 -14.03340 -13.98861 -13.69414 -13.44151 -13.21602 -13.09732 -12.95439 -12.70776 -12.56676 -12.42771 -12.04953 -11.98691 -11.85976 -11.57916 -11.56093 -11.26417 -10.64201 -10.35669 -10.27584 -9.88134 -9.28357 -8.43914 -6.05898 0.59393 0.79035 0.90919 1.33241 1.36016 1.45241 1.49034 1.59103 1.81397 1.96434 2.22300 2.27786 2.73593 3.10707 3.12733 3.39282 3.54394 3.75768 3.94493 4.00308 4.19527 4.37464 4.46369 4.48305 4.58881 4.61498 4.65646 4.72157 4.78807 5.02034 5.08546 5.13657 5.28965 5.39166 5.50265 5.61381 5.78622 5.90045 5.96247 6.48627 6.50306 6.76640 6.80037 6.91838 7.27875 7.34628 7.80039 8.72452 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035643 B = 0.001771 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.368484 B =15803.248966 C =16251.475173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.196 3.804 3 C -0.152 4.152 4 C 0.484 3.516 5 O -0.533 6.533 6 O -0.489 6.489 7 N -0.363 5.363 8 C 0.098 3.902 9 C -0.291 4.291 10 C 0.312 3.688 11 N -0.638 5.638 12 C 0.719 3.281 13 O -0.594 6.594 14 N -0.715 5.715 15 C 0.138 3.862 16 C 0.446 3.554 17 O -0.614 6.614 18 N -0.577 5.577 19 C -0.331 4.331 20 H 0.063 0.937 21 C -0.009 4.009 22 N -0.926 5.926 23 Si 0.959 3.041 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.231 1.231 27 N -0.326 5.326 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.437 0.563 35 H 0.191 0.809 36 H 0.160 0.840 37 H 0.424 0.576 38 H 0.413 0.587 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.393 0.607 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 16.349 -32.908 36.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.111 3.889 3 C -0.210 4.210 4 C 0.325 3.675 5 O -0.422 6.422 6 O -0.302 6.302 7 N -0.149 5.149 8 C -0.048 4.048 9 C -0.321 4.321 10 C 0.055 3.945 11 N -0.289 5.289 12 C 0.418 3.582 13 O -0.471 6.471 14 N -0.373 5.373 15 C 0.010 3.990 16 C 0.233 3.767 17 O -0.500 6.500 18 N -0.217 5.217 19 C -0.460 4.460 20 H 0.082 0.918 21 C -0.208 4.208 22 N -0.566 5.566 23 Si 0.779 3.221 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.154 1.154 27 N -0.156 5.156 28 H 0.106 0.894 29 H 0.134 0.866 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.102 0.898 34 H 0.300 0.700 35 H 0.208 0.792 36 H 0.177 0.823 37 H 0.262 0.738 38 H 0.251 0.749 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.229 0.771 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.507 16.671 -32.838 36.831 hybrid contribution 0.946 -1.361 0.674 1.789 sum 1.454 15.310 -32.164 35.651 Atomic orbital electron populations 1.21972 0.87590 1.03831 1.06163 1.20340 0.98933 0.92563 0.77028 1.22330 1.02606 0.89642 1.06410 1.23198 0.76580 0.81734 0.86026 1.90818 1.36921 1.26971 1.87529 1.84411 1.71534 1.58501 1.15783 1.48071 1.06785 1.47275 1.12762 1.22709 0.89200 0.96000 0.96852 1.21838 0.98916 1.14405 0.96960 1.18968 0.93052 0.96151 0.86340 1.41385 1.14476 1.59315 1.13769 1.15506 0.84019 0.78328 0.80350 1.90844 1.18952 1.63452 1.73897 1.44604 1.15602 1.61433 1.15651 1.20790 0.90969 0.99490 0.87714 1.20487 0.87282 0.82493 0.86428 1.90535 1.18150 1.60490 1.80863 1.41896 1.12097 1.52268 1.15436 1.19027 0.97140 1.36607 0.93215 0.91849 1.26069 1.04751 0.95742 0.94287 1.69776 1.39544 1.39398 1.07889 0.85447 0.76741 0.79171 0.80787 1.18056 1.20006 1.15418 1.77241 1.17236 1.25727 0.95415 0.89420 0.86561 0.92747 0.91066 0.86212 0.89846 0.70004 0.79171 0.82253 0.73825 0.74887 0.87464 0.87231 0.77141 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.02 71.98 0.58 -0.86 16 2 C 0.20 2.53 1.18 2.86 0.00 2.54 16 3 C -0.15 -1.08 8.66 71.98 0.62 -0.46 16 4 C 0.48 6.17 6.86 71.24 0.49 6.66 16 5 O -0.53 -10.95 15.21 21.96 0.33 -10.61 16 6 O -0.49 -2.26 13.23 -51.35 -0.68 -2.94 16 7 N -0.36 -7.61 3.34 -311.29 -1.04 -8.65 16 8 C 0.10 2.23 9.59 83.52 0.80 3.03 16 9 C -0.29 -8.24 9.61 22.10 0.21 -8.03 16 10 C 0.31 8.76 8.11 133.31 1.08 9.84 16 11 N -0.64 -16.68 5.46 -321.23 -1.75 -18.43 16 12 C 0.72 21.74 8.53 179.05 1.53 23.26 16 13 O -0.59 -20.67 13.47 -4.01 -0.05 -20.73 16 14 N -0.72 -21.44 5.53 -482.28 -2.67 -24.11 16 15 C 0.14 4.36 6.15 85.63 0.53 4.89 16 16 C 0.45 18.98 7.85 87.66 0.69 19.67 16 17 O -0.61 -31.11 15.24 -3.07 -0.05 -31.15 16 18 N -0.58 -26.08 5.09 -306.98 -1.56 -27.64 16 19 C -0.33 -18.64 10.16 84.04 0.85 -17.79 16 20 H 0.06 4.22 7.39 -2.91 -0.02 4.20 16 21 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 22 N -0.93 -54.33 13.96 21.66 0.30 -54.03 16 23 Si 0.96 37.86 27.74 68.60 1.90 39.77 16 24 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 25 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 27 N -0.33 -8.24 11.67 -54.44 -0.64 -8.87 16 28 H 0.09 0.99 8.04 -2.38 -0.02 0.97 16 29 H 0.12 0.49 8.11 -2.39 -0.02 0.47 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.12 0.21 8.11 -2.38 -0.02 0.19 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.44 -1.31 9.10 -74.06 -0.67 -1.99 16 35 H 0.19 3.44 7.46 -2.91 -0.02 3.42 16 36 H 0.16 5.03 5.91 -2.91 -0.02 5.01 16 37 H 0.42 8.90 8.84 -92.71 -0.82 8.08 16 38 H 0.41 12.27 7.45 -92.71 -0.69 11.58 16 39 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 41 H 0.39 14.82 5.76 -92.71 -0.53 14.28 16 42 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -82.60 366.08 0.31 -82.29 By element: Atomic # 1 Polarization: 43.99 SS G_CDS: -1.64 Total: 42.35 kcal Atomic # 6 Polarization: 34.91 SS G_CDS: 7.85 Total: 42.76 kcal Atomic # 7 Polarization: -134.38 SS G_CDS: -7.36 Total: -141.73 kcal Atomic # 8 Polarization: -64.99 SS G_CDS: -0.45 Total: -65.43 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.90 Total: 39.77 kcal Total: -82.60 0.31 -82.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602839512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.325 kcal (2) G-P(sol) polarization free energy of solvation -82.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds