Wall clock time and date at job start Tue Mar 31 2020 22:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47203 * 2 1 4 4 H 1.08998 * 109.47563 * 305.00670 * 3 2 1 5 5 N 1.46505 * 109.47005 * 65.00246 * 3 2 1 6 6 C 1.34776 * 120.00224 * 274.99902 * 5 3 2 7 7 O 1.21553 * 119.99601 * 0.02562 * 6 5 3 8 8 C 1.47864 * 120.00133 * 179.97438 * 6 5 3 9 9 C 1.39676 * 120.09873 * 0.02562 * 8 6 5 10 10 C 1.38039 * 120.03669 * 179.97438 * 9 8 6 11 11 C 1.38182 * 120.24195 * 359.74746 * 10 9 8 12 12 C 1.39180 * 120.20408 * 0.50808 * 11 10 9 13 13 S 1.76198 * 120.02111 * 179.76953 * 12 11 10 14 14 C 1.76195 * 99.99810 * 264.90392 * 13 12 11 15 15 H 1.07999 * 120.00544 * 5.03264 * 14 13 12 16 16 C 1.38734 * 120.00127 * 185.02781 * 14 13 12 17 17 N 1.31625 * 119.99373 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00158 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47031 * 90.00460 * 18 16 14 20 20 H 1.48504 * 109.47433 * 210.00125 * 18 16 14 21 21 H 1.48493 * 109.47533 * 330.00371 * 18 16 14 22 22 C 1.38877 * 119.95451 * 359.49244 * 12 11 10 23 23 C 1.53004 * 109.47387 * 185.00070 * 3 2 1 24 24 O 1.42890 * 109.47336 * 300.00429 * 23 3 2 25 25 C 1.42899 * 114.00269 * 202.95107 * 24 23 3 26 26 O 1.42902 * 109.46862 * 60.00483 * 23 3 2 27 27 C 1.42898 * 113.99865 * 165.50027 * 26 23 3 28 28 H 1.09005 * 109.47124 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46719 * 299.99619 * 1 2 3 30 30 H 1.08999 * 109.47507 * 59.99354 * 1 2 3 31 31 H 1.09003 * 109.47335 * 240.00658 * 2 1 3 32 32 H 1.08999 * 109.47507 * 120.00646 * 2 1 3 33 33 H 0.97003 * 119.99757 * 94.99863 * 5 3 2 34 34 H 1.08002 * 119.98018 * 359.95550 * 9 8 6 35 35 H 1.07995 * 119.87673 * 180.02562 * 10 9 8 36 36 H 1.07998 * 119.89528 * 180.25726 * 11 10 9 37 37 H 0.97003 * 119.99662 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.11961 * 180.27785 * 22 12 11 39 39 H 1.09002 * 109.47123 * 179.97438 * 23 3 2 40 40 H 1.09000 * 109.47316 * 65.62831 * 25 24 23 41 41 H 1.09004 * 109.47228 * 185.63227 * 25 24 23 42 42 H 1.09005 * 109.46859 * 305.62756 * 25 24 23 43 43 H 1.08999 * 109.46892 * 197.08076 * 27 26 23 44 44 H 1.08996 * 109.47175 * 317.07640 * 27 26 23 45 45 H 1.09001 * 109.47135 * 77.08113 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6524 2.0974 1.2519 6 6 0.4352 2.6644 1.3671 7 8 -0.3413 2.6318 0.4325 8 6 0.0438 3.3249 2.6308 9 6 0.9343 3.3630 3.7063 10 6 0.5679 3.9804 4.8852 11 6 -0.6773 4.5674 5.0056 12 6 -1.5745 4.5308 3.9422 13 16 -3.1632 5.2755 4.1032 14 6 -4.1133 3.8698 4.5783 15 1 -3.6245 2.9242 4.7607 16 6 -5.4893 3.9776 4.7181 17 7 -6.0851 5.1300 4.4954 18 14 -6.4965 2.4875 5.2225 19 1 -6.5996 2.4379 6.7031 20 1 -7.8567 2.5873 4.6348 21 1 -5.8342 1.2528 4.7307 22 6 -1.2145 3.9118 2.7523 23 6 3.5648 1.4443 -0.1257 24 8 4.1347 0.7376 0.9777 25 6 5.4891 1.0952 1.2600 26 8 3.9428 0.8056 -1.3469 27 6 5.3012 1.0348 -1.7265 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.2720 2.1230 1.9978 34 1 1.9100 2.9088 3.6154 35 1 1.2585 4.0088 5.7150 36 1 -0.9566 5.0526 5.9292 37 1 -7.0473 5.2054 4.5928 38 1 -1.9070 3.8857 1.9238 39 1 3.9281 2.4720 -0.1262 40 1 5.5293 2.1322 1.5932 41 1 5.8804 0.4463 2.0436 42 1 6.0908 0.9796 0.3584 43 1 5.4307 0.7875 -2.7801 44 1 5.5512 2.0835 -1.5661 45 1 5.9579 0.4083 -1.1228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635916351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:52 Heat of formation + Delta-G solvation = -103.794364 kcal Electronic energy + Delta-G solvation = -27104.095378 eV Core-core repulsion = 23213.144851 eV Total energy + Delta-G solvation = -3890.950527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.50938 -39.47993 -37.91346 -36.45252 -35.57923 -32.65144 -32.49327 -30.66964 -30.47870 -29.54978 -26.85007 -26.48589 -25.55700 -23.82095 -23.39315 -22.27838 -20.95191 -20.39326 -18.42813 -17.83831 -17.52416 -17.40550 -16.44883 -16.08304 -15.50239 -15.35500 -14.99002 -14.84265 -14.81698 -14.50360 -14.20035 -14.04764 -13.81706 -13.41242 -13.22323 -13.15025 -12.94745 -12.76133 -12.52672 -12.19301 -11.87800 -11.64749 -11.44398 -11.14648 -11.11131 -11.06603 -11.03800 -10.73943 -10.68765 -10.45860 -10.28651 -9.95310 -9.74210 -9.15331 -9.11330 -9.00176 -8.58285 -8.02158 -6.70339 -6.27463 -4.01331 1.16987 1.67459 2.69727 3.02024 3.14567 3.21772 3.24898 3.29640 3.46551 3.68095 4.09910 4.22392 4.27828 4.34030 4.63024 4.73736 4.81955 4.86971 4.91210 5.05408 5.08041 5.09551 5.12662 5.17974 5.24756 5.31086 5.48518 5.52383 5.64830 5.75361 5.88073 5.92923 5.99075 6.08182 6.20951 6.26191 6.38343 6.51156 6.54879 6.59575 6.60714 6.64492 6.93946 7.19723 7.49505 7.58999 8.29485 8.34096 9.18544 10.79288 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.002583 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.980590 B =10838.772446 C =11582.968962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.166 3.834 4 H 0.108 0.892 5 N -0.723 5.723 6 C 0.567 3.433 7 O -0.525 6.525 8 C -0.154 4.154 9 C -0.090 4.090 10 C -0.141 4.141 11 C -0.055 4.055 12 C -0.107 4.107 13 S -0.035 6.035 14 C -0.519 4.519 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.870 5.870 18 Si 0.921 3.079 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.271 1.271 22 C -0.018 4.018 23 C 0.238 3.762 24 O -0.387 6.387 25 C 0.012 3.988 26 O -0.383 6.383 27 C 0.022 3.978 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.402 0.598 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.269 0.731 38 H 0.140 0.860 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.089 0.911 44 H 0.044 0.956 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.184 -6.988 -6.925 27.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.061 3.939 4 H 0.126 0.874 5 N -0.378 5.378 6 C 0.356 3.644 7 O -0.402 6.402 8 C -0.159 4.159 9 C -0.109 4.109 10 C -0.161 4.161 11 C -0.076 4.076 12 C -0.217 4.217 13 S 0.199 5.801 14 C -0.666 4.666 15 H 0.094 0.906 16 C -0.136 4.136 17 N -0.506 5.506 18 Si 0.747 3.253 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.195 1.195 22 C -0.040 4.040 23 C 0.142 3.858 24 O -0.307 6.307 25 C -0.084 4.084 26 O -0.302 6.302 27 C -0.074 4.074 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.238 0.762 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.157 0.843 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.107 0.893 44 H 0.063 0.937 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 23.821 -6.038 -7.788 25.779 hybrid contribution 0.700 -1.861 0.889 2.178 sum 24.521 -7.899 -6.899 26.670 Atomic orbital electron populations 1.21842 0.94633 1.00753 1.03269 1.21802 0.96753 0.94703 1.02975 1.20774 0.88773 0.95718 0.88654 0.87381 1.45773 1.17353 1.58617 1.16057 1.18327 0.80917 0.77395 0.87802 1.90793 1.50728 1.58598 1.40048 1.19837 0.96873 1.05188 0.93972 1.21143 0.98063 0.98590 0.93104 1.21050 0.97179 1.00359 0.97493 1.21957 0.92482 0.95108 0.98096 1.22850 1.02796 1.01453 0.94629 1.83600 0.92409 1.14679 1.89373 1.22833 0.93852 0.96838 1.53093 0.90611 1.25003 0.96711 0.97093 0.94786 1.69990 1.10667 1.23846 1.46074 0.86121 0.78907 0.81570 0.78738 1.20184 1.20652 1.19527 1.21949 0.93558 0.91047 0.97401 1.23577 0.93643 0.91545 0.77025 1.88068 1.27058 1.66069 1.49492 1.23171 0.83147 1.00666 1.01430 1.88029 1.28183 1.74618 1.39417 1.23050 0.82968 0.99858 1.01488 0.93508 0.92268 0.92142 0.90538 0.91282 0.76246 0.86569 0.85902 0.85099 0.92069 0.84261 0.92001 0.93605 0.89112 0.93058 0.89290 0.93700 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.51 37.16 0.32 -1.74 16 2 C -0.12 -1.48 5.32 -26.74 -0.14 -1.62 16 3 C 0.17 1.89 2.39 -67.93 -0.16 1.72 16 4 H 0.11 1.36 7.58 -51.93 -0.39 0.97 16 5 N -0.72 -8.64 4.95 -54.74 -0.27 -8.91 16 6 C 0.57 8.94 6.34 -12.32 -0.08 8.86 16 7 O -0.53 -9.86 13.48 5.32 0.07 -9.79 16 8 C -0.15 -2.57 5.87 -105.00 -0.62 -3.18 16 9 C -0.09 -1.23 9.54 -39.12 -0.37 -1.60 16 10 C -0.14 -2.01 10.02 -39.67 -0.40 -2.41 16 11 C -0.06 -0.98 9.79 -39.25 -0.38 -1.37 16 12 C -0.11 -2.27 5.45 -38.99 -0.21 -2.48 16 13 S -0.04 -0.91 21.41 -107.50 -2.30 -3.21 16 14 C -0.52 -14.68 9.46 30.92 0.29 -14.38 16 15 H 0.08 2.13 7.79 -52.49 -0.41 1.72 16 16 C 0.07 2.06 5.49 -17.46 -0.10 1.96 16 17 N -0.87 -25.54 13.22 55.49 0.73 -24.80 16 18 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 C -0.02 -0.36 9.34 -38.92 -0.36 -0.72 16 23 C 0.24 2.18 2.63 37.16 0.10 2.28 16 24 O -0.39 -3.46 9.50 -59.04 -0.56 -4.02 16 25 C 0.01 0.07 10.69 101.05 1.08 1.15 16 26 O -0.38 -3.62 9.84 -59.04 -0.58 -4.20 16 27 C 0.02 0.13 9.80 101.05 0.99 1.12 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.96 5.64 -51.92 -0.29 0.67 16 30 H 0.06 0.89 7.84 -51.93 -0.41 0.48 16 31 H 0.08 0.88 7.54 -51.93 -0.39 0.49 16 32 H 0.07 0.84 7.84 -51.93 -0.41 0.43 16 33 H 0.40 3.97 6.23 -40.82 -0.25 3.72 16 34 H 0.12 1.15 6.40 -52.49 -0.34 0.82 16 35 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.13 2.22 8.06 -52.49 -0.42 1.79 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.14 3.05 7.65 -52.48 -0.40 2.65 16 39 H 0.06 0.48 7.58 -51.93 -0.39 0.09 16 40 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.24 4.57 -51.93 -0.24 0.00 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.04 0.21 7.78 -51.93 -0.40 -0.20 16 45 H 0.05 0.26 6.06 -51.93 -0.31 -0.05 16 LS Contribution 381.41 15.07 5.75 5.75 Total: -1.00 -32.88 381.41 -8.55 -41.43 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.31 Total: 3.59 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.05 Total: -12.42 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.46 Total: -33.71 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -1.07 Total: -18.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.88 -8.55 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635916351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.366 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds