Wall clock time and date at job start Tue Mar 31 2020 22:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47203 * 2 1 4 4 H 1.08998 * 109.47563 * 305.00670 * 3 2 1 5 5 N 1.46505 * 109.47005 * 65.00246 * 3 2 1 6 6 C 1.34776 * 120.00224 * 274.99902 * 5 3 2 7 7 O 1.21553 * 119.99601 * 0.02562 * 6 5 3 8 8 C 1.47864 * 120.00133 * 179.97438 * 6 5 3 9 9 C 1.39676 * 120.09873 * 0.02562 * 8 6 5 10 10 C 1.38039 * 120.03669 * 179.97438 * 9 8 6 11 11 C 1.38182 * 120.24195 * 359.74746 * 10 9 8 12 12 C 1.39180 * 120.20408 * 0.50808 * 11 10 9 13 13 S 1.76198 * 120.02111 * 179.76953 * 12 11 10 14 14 C 1.76195 * 99.99810 * 264.90392 * 13 12 11 15 15 H 1.07999 * 120.00544 * 5.03264 * 14 13 12 16 16 C 1.38734 * 120.00127 * 185.02781 * 14 13 12 17 17 N 1.31625 * 119.99373 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00158 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47031 * 90.00460 * 18 16 14 20 20 H 1.48504 * 109.47433 * 210.00125 * 18 16 14 21 21 H 1.48493 * 109.47533 * 330.00371 * 18 16 14 22 22 C 1.38877 * 119.95451 * 359.49244 * 12 11 10 23 23 C 1.53004 * 109.47387 * 185.00070 * 3 2 1 24 24 O 1.42890 * 109.47336 * 300.00429 * 23 3 2 25 25 C 1.42899 * 114.00269 * 202.95107 * 24 23 3 26 26 O 1.42902 * 109.46862 * 60.00483 * 23 3 2 27 27 C 1.42898 * 113.99865 * 165.50027 * 26 23 3 28 28 H 1.09005 * 109.47124 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46719 * 299.99619 * 1 2 3 30 30 H 1.08999 * 109.47507 * 59.99354 * 1 2 3 31 31 H 1.09003 * 109.47335 * 240.00658 * 2 1 3 32 32 H 1.08999 * 109.47507 * 120.00646 * 2 1 3 33 33 H 0.97003 * 119.99757 * 94.99863 * 5 3 2 34 34 H 1.08002 * 119.98018 * 359.95550 * 9 8 6 35 35 H 1.07995 * 119.87673 * 180.02562 * 10 9 8 36 36 H 1.07998 * 119.89528 * 180.25726 * 11 10 9 37 37 H 0.97003 * 119.99662 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.11961 * 180.27785 * 22 12 11 39 39 H 1.09002 * 109.47123 * 179.97438 * 23 3 2 40 40 H 1.09000 * 109.47316 * 65.62831 * 25 24 23 41 41 H 1.09004 * 109.47228 * 185.63227 * 25 24 23 42 42 H 1.09005 * 109.46859 * 305.62756 * 25 24 23 43 43 H 1.08999 * 109.46892 * 197.08076 * 27 26 23 44 44 H 1.08996 * 109.47175 * 317.07640 * 27 26 23 45 45 H 1.09001 * 109.47135 * 77.08113 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6524 2.0974 1.2519 6 6 0.4352 2.6644 1.3671 7 8 -0.3413 2.6318 0.4325 8 6 0.0438 3.3249 2.6308 9 6 0.9343 3.3630 3.7063 10 6 0.5679 3.9804 4.8852 11 6 -0.6773 4.5674 5.0056 12 6 -1.5745 4.5308 3.9422 13 16 -3.1632 5.2755 4.1032 14 6 -4.1133 3.8698 4.5783 15 1 -3.6245 2.9242 4.7607 16 6 -5.4893 3.9776 4.7181 17 7 -6.0851 5.1300 4.4954 18 14 -6.4965 2.4875 5.2225 19 1 -6.5996 2.4379 6.7031 20 1 -7.8567 2.5873 4.6348 21 1 -5.8342 1.2528 4.7307 22 6 -1.2145 3.9118 2.7523 23 6 3.5648 1.4443 -0.1257 24 8 4.1347 0.7376 0.9777 25 6 5.4891 1.0952 1.2600 26 8 3.9428 0.8056 -1.3469 27 6 5.3012 1.0348 -1.7265 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.2720 2.1230 1.9978 34 1 1.9100 2.9088 3.6154 35 1 1.2585 4.0088 5.7150 36 1 -0.9566 5.0526 5.9292 37 1 -7.0473 5.2054 4.5928 38 1 -1.9070 3.8857 1.9238 39 1 3.9281 2.4720 -0.1262 40 1 5.5293 2.1322 1.5932 41 1 5.8804 0.4463 2.0436 42 1 6.0908 0.9796 0.3584 43 1 5.4307 0.7875 -2.7801 44 1 5.5512 2.0835 -1.5661 45 1 5.9579 0.4083 -1.1228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635916351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:51 Heat of formation + Delta-G solvation = -125.708951 kcal Electronic energy + Delta-G solvation = -27105.045666 eV Core-core repulsion = 23213.144851 eV Total energy + Delta-G solvation = -3891.900815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.57873 -40.33462 -39.18595 -37.05001 -36.62792 -34.65320 -33.81949 -31.98785 -31.78532 -30.29841 -27.74773 -27.54964 -26.91032 -24.96164 -24.36578 -23.64517 -22.01786 -21.56158 -20.04111 -19.07487 -18.52514 -18.09398 -17.36843 -17.25098 -16.93443 -16.68597 -16.52693 -16.22682 -15.71408 -15.40990 -15.22219 -15.01967 -14.78318 -14.59769 -14.53647 -14.36789 -13.84915 -13.71523 -13.61464 -13.29403 -13.19748 -13.07214 -12.96814 -12.66970 -12.47964 -12.37942 -12.35947 -11.91929 -11.81946 -11.72587 -11.24485 -11.07810 -11.01429 -10.77161 -10.74552 -10.22579 -9.90665 -9.69531 -8.80141 -8.39401 -6.19034 -0.17338 0.26636 1.29315 1.36966 1.45518 1.63351 1.77811 1.83458 2.24252 2.49623 2.81745 2.93556 2.97242 3.41859 3.51611 3.60989 3.72311 3.95270 4.03316 4.13467 4.15505 4.26727 4.35595 4.36826 4.47566 4.50499 4.52266 4.56462 4.61152 4.71234 4.78353 4.88449 4.93358 4.97238 5.01505 5.12860 5.23139 5.32918 5.38611 5.38693 5.43460 5.51607 5.86909 5.97673 6.00372 6.15782 6.44335 7.01144 7.13254 8.67662 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.002583 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.980590 B =10838.772446 C =11582.968962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.162 3.838 4 H 0.092 0.908 5 N -0.699 5.699 6 C 0.567 3.433 7 O -0.564 6.564 8 C -0.156 4.156 9 C -0.064 4.064 10 C -0.120 4.120 11 C -0.063 4.063 12 C -0.129 4.129 13 S -0.095 6.095 14 C -0.535 4.535 15 H 0.066 0.934 16 C 0.020 3.980 17 N -0.906 5.906 18 Si 0.991 3.009 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.270 1.270 22 C -0.043 4.043 23 C 0.247 3.753 24 O -0.402 6.402 25 C 0.004 3.996 26 O -0.406 6.406 27 C 0.015 3.985 28 H 0.055 0.945 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.416 0.584 34 H 0.170 0.830 35 H 0.175 0.825 36 H 0.135 0.865 37 H 0.274 0.726 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.126 -8.740 -5.728 30.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C 0.058 3.942 4 H 0.110 0.890 5 N -0.354 5.354 6 C 0.356 3.644 7 O -0.444 6.444 8 C -0.161 4.161 9 C -0.082 4.082 10 C -0.140 4.140 11 C -0.084 4.084 12 C -0.240 4.240 13 S 0.140 5.860 14 C -0.682 4.682 15 H 0.085 0.915 16 C -0.186 4.186 17 N -0.542 5.542 18 Si 0.813 3.187 19 H -0.186 1.186 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.065 4.065 23 C 0.151 3.849 24 O -0.323 6.323 25 C -0.091 4.091 26 O -0.326 6.326 27 C -0.080 4.080 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.254 0.746 34 H 0.187 0.813 35 H 0.193 0.807 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.119 0.881 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 27.824 -7.790 -6.577 29.633 hybrid contribution -0.293 -1.350 0.466 1.458 sum 27.531 -9.141 -6.111 29.646 Atomic orbital electron populations 1.21779 0.96448 1.00642 1.01229 1.21708 0.94861 0.95283 1.03417 1.20778 0.91038 0.94852 0.87578 0.89008 1.45513 1.15996 1.57048 1.16859 1.18245 0.81696 0.77471 0.87022 1.90785 1.52187 1.60168 1.41230 1.19934 0.95927 1.04616 0.95590 1.21696 0.99068 0.96247 0.91233 1.21538 0.95858 0.97590 0.98968 1.22072 0.93535 0.95673 0.97079 1.22494 1.00693 1.04136 0.96684 1.83470 0.96683 1.16090 1.89740 1.23049 0.94765 0.96997 1.53380 0.91548 1.25995 0.97784 1.00220 0.94565 1.70109 1.11122 1.25956 1.47039 0.85062 0.77211 0.77436 0.79022 1.18620 1.19707 1.19419 1.21617 0.95159 0.93364 0.96331 1.23314 0.91685 0.92511 0.77414 1.88030 1.28781 1.66388 1.49115 1.23391 0.81627 1.01805 1.02303 1.87990 1.30164 1.74964 1.39472 1.23263 0.81425 1.01090 1.02226 0.92599 0.94772 0.93705 0.89881 0.90870 0.74557 0.81266 0.80729 0.84705 0.91706 0.87856 0.90241 0.92182 0.88124 0.92132 0.88427 0.92215 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 8.51 71.98 0.61 -3.44 16 2 C -0.11 -2.59 5.32 30.59 0.16 -2.43 16 3 C 0.16 3.45 2.39 44.99 0.11 3.56 16 4 H 0.09 2.30 7.58 -2.39 -0.02 2.28 16 5 N -0.70 -15.15 4.95 -445.38 -2.21 -17.35 16 6 C 0.57 17.67 6.34 86.79 0.55 18.22 16 7 O -0.56 -22.17 13.48 -3.88 -0.05 -22.22 16 8 C -0.16 -5.06 5.87 -20.11 -0.12 -5.18 16 9 C -0.06 -1.47 9.54 22.57 0.22 -1.26 16 10 C -0.12 -2.89 10.02 22.21 0.22 -2.67 16 11 C -0.06 -2.17 9.79 22.48 0.22 -1.95 16 12 C -0.13 -5.70 5.45 22.65 0.12 -5.58 16 13 S -0.09 -5.20 21.41 -56.49 -1.21 -6.41 16 14 C -0.53 -31.68 9.46 67.94 0.64 -31.04 16 15 H 0.07 3.91 7.79 -2.91 -0.02 3.88 16 16 C 0.02 1.14 5.49 84.84 0.47 1.60 16 17 N -0.91 -55.09 13.22 21.64 0.29 -54.81 16 18 Si 0.99 45.21 29.55 68.60 2.03 47.24 16 19 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 C -0.04 -1.82 9.34 22.70 0.21 -1.61 16 23 C 0.25 3.82 2.63 71.98 0.19 4.01 16 24 O -0.40 -5.72 9.50 -126.21 -1.20 -6.92 16 25 C 0.00 0.03 10.69 113.37 1.21 1.24 16 26 O -0.41 -6.72 9.84 -126.21 -1.24 -7.96 16 27 C 0.02 0.14 9.80 113.37 1.11 1.25 16 28 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.03 1.12 5.64 -2.38 -0.01 1.11 16 30 H 0.04 1.38 7.84 -2.39 -0.02 1.36 16 31 H 0.08 1.80 7.54 -2.39 -0.02 1.78 16 32 H 0.07 1.62 7.84 -2.39 -0.02 1.60 16 33 H 0.42 6.43 6.23 -92.71 -0.58 5.86 16 34 H 0.17 2.15 6.40 -2.91 -0.02 2.14 16 35 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.10 5.02 7.65 -2.91 -0.02 5.00 16 39 H 0.08 0.95 7.58 -2.39 -0.02 0.93 16 40 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.10 0.53 8.14 -2.39 -0.02 0.52 16 42 H 0.06 0.32 4.57 -2.38 -0.01 0.31 16 43 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.06 0.35 7.78 -2.39 -0.02 0.34 16 45 H 0.06 0.42 6.06 -2.39 -0.01 0.41 16 Total: -1.00 -78.20 381.41 2.77 -75.43 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.44 Total: 18.28 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: 5.93 Total: -25.27 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.92 Total: -72.16 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -2.49 Total: -37.10 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -1.21 Total: -6.41 kcal Total: -78.20 2.77 -75.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635916351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.283 kcal (2) G-P(sol) polarization free energy of solvation -78.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds