Wall clock time and date at job start Tue Mar 31 2020 22:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47653 * 2 1 4 4 H 1.09002 * 109.46750 * 54.99493 * 3 2 1 5 5 N 1.46507 * 109.46830 * 295.00298 * 3 2 1 6 6 C 1.34770 * 120.00087 * 84.99712 * 5 3 2 7 7 O 1.21553 * 120.00230 * 359.97438 * 6 5 3 8 8 C 1.47861 * 119.99875 * 180.02562 * 6 5 3 9 9 C 1.39671 * 120.10054 * 359.72179 * 8 6 5 10 10 C 1.38040 * 120.03646 * 179.74498 * 9 8 6 11 11 C 1.38182 * 120.24872 * 0.55622 * 10 9 8 12 12 C 1.39187 * 120.19766 * 359.69790 * 11 10 9 13 13 S 1.76190 * 120.02122 * 179.97438 * 12 11 10 14 14 C 1.76198 * 100.00250 * 274.81056 * 13 12 11 15 15 H 1.07998 * 119.99953 * 5.02629 * 14 13 12 16 16 C 1.38729 * 120.00121 * 185.01850 * 14 13 12 17 17 N 1.31623 * 120.00074 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99816 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46919 * 90.00388 * 18 16 14 20 20 H 1.48505 * 109.47147 * 209.99743 * 18 16 14 21 21 H 1.48497 * 109.47327 * 329.99871 * 18 16 14 22 22 C 1.38876 * 119.95688 * 0.02562 * 12 11 10 23 23 C 1.52998 * 109.47502 * 175.00141 * 3 2 1 24 24 O 1.42904 * 109.47094 * 180.02562 * 23 3 2 25 25 C 1.42901 * 113.99539 * 205.75718 * 24 23 3 26 26 O 1.42897 * 109.46781 * 299.99993 * 23 3 2 27 27 C 1.42898 * 114.00005 * 166.10161 * 26 23 3 28 28 H 1.09005 * 109.46913 * 60.00023 * 1 2 3 29 29 H 1.09001 * 109.46747 * 300.00484 * 1 2 3 30 30 H 1.09000 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47379 * 119.99746 * 2 1 3 32 32 H 1.09001 * 109.47249 * 239.99681 * 2 1 3 33 33 H 0.97002 * 119.99625 * 264.99547 * 5 3 2 34 34 H 1.07996 * 119.98280 * 0.02562 * 9 8 6 35 35 H 1.08001 * 119.87809 * 180.27525 * 10 9 8 36 36 H 1.07990 * 119.90549 * 179.72093 * 11 10 9 37 37 H 0.96999 * 120.00211 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.12312 * 180.02562 * 22 12 11 39 39 H 1.09002 * 109.47152 * 59.99720 * 23 3 2 40 40 H 1.08992 * 109.47325 * 306.52555 * 25 24 23 41 41 H 1.08999 * 109.47060 * 66.53405 * 25 24 23 42 42 H 1.09003 * 109.46318 * 186.52667 * 25 24 23 43 43 H 1.09005 * 109.47367 * 196.33330 * 27 26 23 44 44 H 1.08998 * 109.46970 * 316.33087 * 27 26 23 45 45 H 1.08998 * 109.47484 * 76.33346 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0975 -1.2519 6 6 0.4353 2.6644 -1.3670 7 8 -0.3412 2.6319 -0.4323 8 6 0.0439 3.3249 -2.6306 9 6 0.9362 3.3677 -3.7043 10 6 0.5675 3.9801 -4.8852 11 6 -0.6794 4.5630 -5.0073 12 6 -1.5745 4.5309 -3.9420 13 16 -3.1630 5.2762 -4.1025 14 6 -2.7642 6.9401 -3.6820 15 1 -1.7364 7.2212 -3.5064 16 6 -3.7706 7.8892 -3.5764 17 7 -3.4727 9.1323 -3.2628 18 14 -5.5483 7.4031 -3.8810 19 1 -6.1677 6.9662 -2.6040 20 1 -6.2948 8.5683 -4.4198 21 1 -5.5959 6.2885 -4.8611 22 6 -1.2145 3.9120 -2.7520 23 6 3.5649 1.4443 0.1257 24 8 4.0412 2.7916 0.1263 25 6 5.3859 2.9328 -0.3364 26 8 3.9429 0.8054 1.3467 27 6 5.3302 0.4714 1.4227 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 2.2720 2.1231 -1.9978 34 1 1.9135 2.9174 -3.6121 35 1 1.2579 4.0077 -5.7153 36 1 -0.9603 5.0445 -5.9322 37 1 -4.1763 9.7959 -3.1893 38 1 -1.9071 3.8852 -1.9238 39 1 3.9995 0.9052 -0.7161 40 1 6.0367 2.2665 0.2297 41 1 5.4349 2.6761 -1.3946 42 1 5.7115 3.9637 -0.1971 43 1 5.4866 -0.2516 2.2234 44 1 5.6523 0.0394 0.4752 45 1 5.9100 1.3713 1.6275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635916352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:55 Heat of formation + Delta-G solvation = -103.104114 kcal Electronic energy + Delta-G solvation = -27067.099130 eV Core-core repulsion = 23176.178534 eV Total energy + Delta-G solvation = -3890.920596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.50898 -39.46806 -37.98627 -36.44015 -35.69746 -32.74278 -32.48631 -30.74408 -30.57490 -29.55027 -26.87552 -26.48546 -25.66694 -23.84287 -23.31316 -22.40534 -21.13754 -20.50573 -18.50408 -17.75550 -17.58426 -17.42139 -16.53042 -16.08361 -15.47287 -15.35902 -15.13700 -14.88712 -14.80586 -14.62873 -14.24771 -14.07910 -13.85523 -13.45064 -13.30978 -13.15946 -12.97428 -12.89310 -12.39597 -12.21215 -11.94989 -11.85819 -11.58161 -11.34673 -11.19811 -11.15496 -11.08176 -10.91159 -10.63120 -10.45282 -10.27156 -9.92590 -9.78303 -9.20608 -9.14751 -9.07308 -8.64188 -8.14726 -7.12238 -6.31652 -4.07204 1.11540 1.59458 2.64882 2.88786 3.06472 3.14468 3.28752 3.39823 3.50611 3.65326 4.07815 4.17448 4.27506 4.42659 4.66200 4.72404 4.82472 4.86403 4.89560 4.91097 4.91838 5.00593 5.03911 5.07487 5.17364 5.18873 5.33113 5.34119 5.57884 5.68961 5.72139 5.78914 5.89151 5.92981 6.05069 6.18291 6.31494 6.41936 6.51069 6.56986 6.57874 6.60993 6.83701 7.11142 7.43998 7.92507 8.27573 8.45860 9.12274 10.77806 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.002532 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.147594 B =11053.846320 C =11319.978834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.162 3.838 4 H 0.107 0.893 5 N -0.719 5.719 6 C 0.570 3.430 7 O -0.524 6.524 8 C -0.151 4.151 9 C -0.085 4.085 10 C -0.140 4.140 11 C -0.050 4.050 12 C -0.085 4.085 13 S -0.112 6.112 14 C -0.509 4.509 15 H 0.091 0.909 16 C 0.095 3.905 17 N -0.876 5.876 18 Si 0.858 3.142 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.239 1.239 22 C -0.016 4.016 23 C 0.239 3.761 24 O -0.383 6.383 25 C 0.015 3.985 26 O -0.383 6.383 27 C 0.024 3.976 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.397 0.603 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.272 0.728 38 H 0.141 0.859 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.043 0.957 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.264 -19.381 2.668 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.057 3.943 4 H 0.125 0.875 5 N -0.373 5.373 6 C 0.359 3.641 7 O -0.400 6.400 8 C -0.156 4.156 9 C -0.104 4.104 10 C -0.159 4.159 11 C -0.071 4.071 12 C -0.196 4.196 13 S 0.121 5.879 14 C -0.656 4.656 15 H 0.109 0.891 16 C -0.114 4.114 17 N -0.512 5.512 18 Si 0.682 3.318 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.164 1.164 22 C -0.038 4.038 23 C 0.142 3.858 24 O -0.303 6.303 25 C -0.081 4.081 26 O -0.303 6.303 27 C -0.072 4.072 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.232 0.768 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.159 0.841 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.324 -19.521 3.310 26.308 hybrid contribution 1.452 0.559 -0.365 1.598 sum 18.775 -18.961 2.945 26.846 Atomic orbital electron populations 1.21803 0.93990 1.00827 1.03657 1.21887 0.97725 0.94319 1.02558 1.20676 0.89480 0.94985 0.89147 0.87498 1.45635 1.17096 1.58983 1.15616 1.18224 0.80992 0.77227 0.87681 1.90793 1.51021 1.58257 1.39948 1.19803 0.96669 1.05131 0.93992 1.21153 0.97874 0.98396 0.92990 1.21043 0.96990 1.00253 0.97655 1.21926 0.92317 0.94387 0.98520 1.22191 1.01178 1.01178 0.95006 1.83067 1.05504 1.09218 1.90066 1.22240 0.98355 0.90137 1.54837 0.89082 1.24740 0.99182 0.94142 0.93335 1.69924 1.34003 1.01839 1.45473 0.86733 0.84571 0.79869 0.80586 1.18992 1.19826 1.16352 1.21870 0.94001 0.91121 0.96793 1.23525 0.94405 0.81010 0.86825 1.88152 1.28911 1.27344 1.85918 1.23123 0.83299 1.03458 0.98232 1.88030 1.25381 1.77177 1.39686 1.23005 0.82150 1.00231 1.01854 0.92133 0.91773 0.93314 0.90078 0.92039 0.76826 0.86507 0.85691 0.84916 0.91812 0.84124 0.92296 0.93328 0.93667 0.89038 0.89260 0.93791 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.51 37.16 0.32 -1.42 16 2 C -0.13 -1.24 5.53 -26.73 -0.15 -1.39 16 3 C 0.16 1.82 2.30 -67.93 -0.16 1.66 16 4 H 0.11 1.52 7.58 -51.93 -0.39 1.12 16 5 N -0.72 -8.37 4.85 -54.74 -0.27 -8.63 16 6 C 0.57 8.90 6.34 -12.33 -0.08 8.82 16 7 O -0.52 -9.80 13.48 5.32 0.07 -9.73 16 8 C -0.15 -2.47 5.87 -105.00 -0.62 -3.08 16 9 C -0.09 -1.13 9.54 -39.12 -0.37 -1.50 16 10 C -0.14 -1.95 10.02 -39.67 -0.40 -2.34 16 11 C -0.05 -0.89 9.79 -39.25 -0.38 -1.27 16 12 C -0.08 -1.76 5.45 -38.99 -0.21 -1.98 16 13 S -0.11 -2.73 19.38 -107.50 -2.08 -4.82 16 14 C -0.51 -14.64 10.01 30.91 0.31 -14.33 16 15 H 0.09 2.84 8.02 -52.49 -0.42 2.42 16 16 C 0.09 2.75 5.50 -17.46 -0.10 2.65 16 17 N -0.88 -26.44 13.97 55.49 0.78 -25.66 16 18 Si 0.86 21.14 27.73 -169.99 -4.71 16.42 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 22 C -0.02 -0.32 9.34 -38.92 -0.36 -0.68 16 23 C 0.24 2.23 2.40 37.16 0.09 2.32 16 24 O -0.38 -4.12 10.43 -59.05 -0.62 -4.74 16 25 C 0.01 0.10 10.68 101.05 1.08 1.18 16 26 O -0.38 -3.68 9.84 -59.05 -0.58 -4.26 16 27 C 0.02 0.14 9.76 101.05 0.99 1.13 16 28 H 0.06 0.84 5.64 -51.93 -0.29 0.55 16 29 H 0.06 0.86 7.84 -51.93 -0.41 0.45 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.75 7.54 -51.93 -0.39 0.35 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.40 3.56 6.63 -40.82 -0.27 3.29 16 34 H 0.12 1.08 6.40 -52.49 -0.34 0.74 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.14 2.94 7.65 -52.49 -0.40 2.54 16 39 H 0.06 0.41 7.56 -51.93 -0.39 0.01 16 40 H 0.05 0.26 4.80 -51.93 -0.25 0.01 16 41 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.04 0.19 7.80 -51.93 -0.41 -0.22 16 45 H 0.05 0.29 6.27 -51.93 -0.33 -0.04 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -33.97 380.52 -8.13 -42.10 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.40 Total: 3.82 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -0.05 Total: -10.24 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.51 Total: -34.29 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -1.13 Total: -18.73 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.42 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.08 Total: -4.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.97 -8.13 -42.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635916352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.006 kcal (2) G-P(sol) polarization free energy of solvation -33.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds