Wall clock time and date at job start Tue Mar 31 2020 22:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47653 * 2 1 4 4 H 1.09002 * 109.46750 * 54.99493 * 3 2 1 5 5 N 1.46507 * 109.46830 * 295.00298 * 3 2 1 6 6 C 1.34770 * 120.00087 * 84.99712 * 5 3 2 7 7 O 1.21553 * 120.00230 * 359.97438 * 6 5 3 8 8 C 1.47861 * 119.99875 * 180.02562 * 6 5 3 9 9 C 1.39671 * 120.10054 * 359.72179 * 8 6 5 10 10 C 1.38040 * 120.03646 * 179.74498 * 9 8 6 11 11 C 1.38182 * 120.24872 * 0.55622 * 10 9 8 12 12 C 1.39187 * 120.19766 * 359.69790 * 11 10 9 13 13 S 1.76190 * 120.02122 * 179.97438 * 12 11 10 14 14 C 1.76198 * 100.00250 * 274.81056 * 13 12 11 15 15 H 1.07998 * 119.99953 * 5.02629 * 14 13 12 16 16 C 1.38729 * 120.00121 * 185.01850 * 14 13 12 17 17 N 1.31623 * 120.00074 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99816 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46919 * 90.00388 * 18 16 14 20 20 H 1.48505 * 109.47147 * 209.99743 * 18 16 14 21 21 H 1.48497 * 109.47327 * 329.99871 * 18 16 14 22 22 C 1.38876 * 119.95688 * 0.02562 * 12 11 10 23 23 C 1.52998 * 109.47502 * 175.00141 * 3 2 1 24 24 O 1.42904 * 109.47094 * 180.02562 * 23 3 2 25 25 C 1.42901 * 113.99539 * 205.75718 * 24 23 3 26 26 O 1.42897 * 109.46781 * 299.99993 * 23 3 2 27 27 C 1.42898 * 114.00005 * 166.10161 * 26 23 3 28 28 H 1.09005 * 109.46913 * 60.00023 * 1 2 3 29 29 H 1.09001 * 109.46747 * 300.00484 * 1 2 3 30 30 H 1.09000 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47379 * 119.99746 * 2 1 3 32 32 H 1.09001 * 109.47249 * 239.99681 * 2 1 3 33 33 H 0.97002 * 119.99625 * 264.99547 * 5 3 2 34 34 H 1.07996 * 119.98280 * 0.02562 * 9 8 6 35 35 H 1.08001 * 119.87809 * 180.27525 * 10 9 8 36 36 H 1.07990 * 119.90549 * 179.72093 * 11 10 9 37 37 H 0.96999 * 120.00211 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.12312 * 180.02562 * 22 12 11 39 39 H 1.09002 * 109.47152 * 59.99720 * 23 3 2 40 40 H 1.08992 * 109.47325 * 306.52555 * 25 24 23 41 41 H 1.08999 * 109.47060 * 66.53405 * 25 24 23 42 42 H 1.09003 * 109.46318 * 186.52667 * 25 24 23 43 43 H 1.09005 * 109.47367 * 196.33330 * 27 26 23 44 44 H 1.08998 * 109.46970 * 316.33087 * 27 26 23 45 45 H 1.08998 * 109.47484 * 76.33346 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0975 -1.2519 6 6 0.4353 2.6644 -1.3670 7 8 -0.3412 2.6319 -0.4323 8 6 0.0439 3.3249 -2.6306 9 6 0.9362 3.3677 -3.7043 10 6 0.5675 3.9801 -4.8852 11 6 -0.6794 4.5630 -5.0073 12 6 -1.5745 4.5309 -3.9420 13 16 -3.1630 5.2762 -4.1025 14 6 -2.7642 6.9401 -3.6820 15 1 -1.7364 7.2212 -3.5064 16 6 -3.7706 7.8892 -3.5764 17 7 -3.4727 9.1323 -3.2628 18 14 -5.5483 7.4031 -3.8810 19 1 -6.1677 6.9662 -2.6040 20 1 -6.2948 8.5683 -4.4198 21 1 -5.5959 6.2885 -4.8611 22 6 -1.2145 3.9120 -2.7520 23 6 3.5649 1.4443 0.1257 24 8 4.0412 2.7916 0.1263 25 6 5.3859 2.9328 -0.3364 26 8 3.9429 0.8054 1.3467 27 6 5.3302 0.4714 1.4227 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 2.2720 2.1231 -1.9978 34 1 1.9135 2.9174 -3.6121 35 1 1.2579 4.0077 -5.7153 36 1 -0.9603 5.0445 -5.9322 37 1 -4.1763 9.7959 -3.1893 38 1 -1.9071 3.8852 -1.9238 39 1 3.9995 0.9052 -0.7161 40 1 6.0367 2.2665 0.2297 41 1 5.4349 2.6761 -1.3946 42 1 5.7115 3.9637 -0.1971 43 1 5.4866 -0.2516 2.2234 44 1 5.6523 0.0394 0.4752 45 1 5.9100 1.3713 1.6275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635916352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:54 Heat of formation + Delta-G solvation = -127.019881 kcal Electronic energy + Delta-G solvation = -27068.136195 eV Core-core repulsion = 23176.178534 eV Total energy + Delta-G solvation = -3891.957661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.57353 -40.32291 -39.22003 -37.07242 -36.73031 -34.71996 -33.83442 -32.01967 -31.82325 -30.28185 -27.92607 -27.58562 -26.96081 -25.01609 -24.13912 -23.72078 -22.12017 -21.67697 -20.11425 -19.08239 -18.48007 -18.21771 -17.44400 -17.24506 -17.14328 -16.70447 -16.43405 -16.17909 -15.76730 -15.38837 -15.18651 -15.00661 -14.93751 -14.70866 -14.60814 -14.42007 -14.02168 -13.79947 -13.60499 -13.55405 -13.14285 -13.07790 -12.97985 -12.71078 -12.50785 -12.31379 -12.28960 -11.98904 -11.85934 -11.78481 -11.23339 -11.14775 -11.02516 -10.90658 -10.81172 -10.24622 -9.93491 -9.74474 -9.14646 -8.54108 -6.28151 -0.20196 0.21062 1.06055 1.31160 1.43568 1.64455 1.71802 1.86835 2.21452 2.47227 2.60298 2.84016 2.95468 2.97561 3.54931 3.63249 3.77746 3.91738 4.00576 4.05048 4.14628 4.27586 4.31363 4.36551 4.44284 4.45664 4.48015 4.52926 4.60106 4.70976 4.76323 4.87811 4.89827 4.94081 5.02193 5.08676 5.19502 5.29771 5.38065 5.43806 5.44943 5.68738 5.82519 5.99340 6.04098 6.10095 6.43003 6.88482 7.14390 8.59510 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.002532 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.147594 B =11053.846320 C =11319.978834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.159 3.841 4 H 0.067 0.933 5 N -0.696 5.696 6 C 0.568 3.432 7 O -0.566 6.566 8 C -0.155 4.155 9 C -0.059 4.059 10 C -0.122 4.122 11 C -0.060 4.060 12 C -0.119 4.119 13 S -0.117 6.117 14 C -0.522 4.522 15 H 0.047 0.953 16 C 0.040 3.960 17 N -0.920 5.920 18 Si 0.921 3.079 19 H -0.263 1.263 20 H -0.257 1.257 21 H -0.227 1.227 22 C -0.041 4.041 23 C 0.243 3.757 24 O -0.417 6.417 25 C 0.007 3.993 26 O -0.407 6.407 27 C 0.016 3.984 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.414 0.586 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.136 0.864 37 H 0.278 0.722 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.067 0.933 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.316 -22.179 0.827 31.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C 0.054 3.946 4 H 0.085 0.915 5 N -0.350 5.350 6 C 0.357 3.643 7 O -0.446 6.446 8 C -0.160 4.160 9 C -0.077 4.077 10 C -0.141 4.141 11 C -0.081 4.081 12 C -0.230 4.230 13 S 0.117 5.883 14 C -0.669 4.669 15 H 0.065 0.935 16 C -0.165 4.165 17 N -0.557 5.557 18 Si 0.742 3.258 19 H -0.188 1.188 20 H -0.181 1.181 21 H -0.150 1.150 22 C -0.063 4.063 23 C 0.148 3.852 24 O -0.338 6.338 25 C -0.088 4.088 26 O -0.327 6.327 27 C -0.079 4.079 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.253 0.747 34 H 0.191 0.809 35 H 0.194 0.806 36 H 0.154 0.846 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.086 0.914 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 20.437 -22.339 1.449 30.311 hybrid contribution 0.771 1.339 0.279 1.570 sum 21.208 -21.000 1.728 29.896 Atomic orbital electron populations 1.21748 0.95992 1.01065 1.01271 1.21822 0.95719 0.93593 1.04340 1.20701 0.91476 0.95099 0.87316 0.91512 1.45373 1.15760 1.57413 1.16451 1.18195 0.81873 0.77321 0.86948 1.90784 1.52604 1.59939 1.41228 1.19928 0.95842 1.04739 0.95525 1.21736 0.98986 0.95957 0.91043 1.21547 0.95671 0.97659 0.99197 1.22084 0.93459 0.94954 0.97593 1.22053 1.00339 1.03496 0.97074 1.82636 1.09551 1.06142 1.90011 1.22373 0.96554 0.93308 1.54706 0.93490 1.25721 1.03835 0.93997 0.92912 1.70029 1.35792 1.03123 1.46804 0.85776 0.78758 0.80400 0.80848 1.18786 1.18105 1.15003 1.21630 0.95579 0.93217 0.95825 1.23448 0.92644 0.81108 0.88048 1.88110 1.30918 1.28253 1.86511 1.23334 0.81828 1.03912 0.99749 1.87995 1.27488 1.77209 1.40049 1.23225 0.80366 1.00694 1.03627 0.94306 0.94463 0.91638 0.89129 0.89212 0.74749 0.80935 0.80615 0.84631 0.91265 0.87199 0.88651 0.91830 0.91460 0.89281 0.88206 0.91424 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.51 71.98 0.61 -2.81 16 2 C -0.12 -2.05 5.53 30.59 0.17 -1.88 16 3 C 0.16 3.36 2.30 44.99 0.10 3.46 16 4 H 0.07 1.97 7.58 -2.39 -0.02 1.96 16 5 N -0.70 -14.66 4.85 -445.38 -2.16 -16.82 16 6 C 0.57 17.67 6.34 86.79 0.55 18.22 16 7 O -0.57 -22.47 13.48 -3.88 -0.05 -22.52 16 8 C -0.16 -4.95 5.87 -20.11 -0.12 -5.07 16 9 C -0.06 -1.31 9.54 22.57 0.22 -1.10 16 10 C -0.12 -2.87 10.02 22.21 0.22 -2.65 16 11 C -0.06 -2.05 9.79 22.48 0.22 -1.83 16 12 C -0.12 -5.08 5.45 22.65 0.12 -4.96 16 13 S -0.12 -5.92 19.38 -56.49 -1.09 -7.01 16 14 C -0.52 -31.66 10.01 67.94 0.68 -30.98 16 15 H 0.05 3.14 8.02 -2.91 -0.02 3.12 16 16 C 0.04 2.42 5.50 84.84 0.47 2.88 16 17 N -0.92 -57.67 13.97 21.64 0.30 -57.37 16 18 Si 0.92 44.64 27.73 68.60 1.90 46.55 16 19 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.23 -10.43 6.74 99.48 0.67 -9.76 16 22 C -0.04 -1.68 9.34 22.70 0.21 -1.47 16 23 C 0.24 3.84 2.40 71.98 0.17 4.01 16 24 O -0.42 -8.01 10.43 -126.21 -1.32 -9.33 16 25 C 0.01 0.07 10.68 113.37 1.21 1.28 16 26 O -0.41 -6.88 9.84 -126.21 -1.24 -8.13 16 27 C 0.02 0.14 9.76 113.37 1.11 1.25 16 28 H 0.04 1.09 5.64 -2.38 -0.01 1.07 16 29 H 0.04 1.06 7.84 -2.39 -0.02 1.04 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.47 7.54 -2.38 -0.02 1.45 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.41 5.50 6.63 -92.71 -0.61 4.89 16 34 H 0.17 1.94 6.40 -2.91 -0.02 1.92 16 35 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 36 H 0.14 4.46 8.06 -2.92 -0.02 4.44 16 37 H 0.28 16.00 8.31 -92.71 -0.77 15.23 16 38 H 0.11 5.08 7.65 -2.91 -0.02 5.05 16 39 H 0.10 0.80 7.56 -2.39 -0.02 0.79 16 40 H 0.06 0.46 4.80 -2.39 -0.01 0.45 16 41 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.07 0.28 7.80 -2.39 -0.02 0.26 16 45 H 0.05 0.44 6.27 -2.39 -0.01 0.42 16 Total: -1.00 -82.60 380.52 2.65 -79.95 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.36 Total: 16.31 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 5.95 Total: -21.64 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -1.86 Total: -74.19 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -2.61 Total: -39.97 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.55 kcal Atomic # 16 Polarization: -5.92 SS G_CDS: -1.09 Total: -7.01 kcal Total: -82.60 2.65 -79.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635916352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.068 kcal (2) G-P(sol) polarization free energy of solvation -82.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds