Wall clock time and date at job start Tue Mar 31 2020 23:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.67739 * 2 1 4 4 C 1.53290 * 109.67903 * 120.51778 * 2 1 3 5 5 O 1.42963 * 109.22821 * 172.02775 * 4 2 1 6 6 C 1.42964 * 114.16090 * 297.42025 * 5 4 2 7 7 C 1.53006 * 109.51018 * 182.49938 * 6 5 4 8 8 C 1.52998 * 109.51423 * 302.59780 * 6 5 4 9 9 C 1.53296 * 109.22584 * 62.57756 * 6 5 4 10 10 N 1.47148 * 108.38231 * 307.69719 * 9 6 5 11 11 S 1.65601 * 120.98303 * 230.55705 * 10 9 6 12 12 O 1.42104 * 106.40303 * 17.40654 * 11 10 9 13 13 O 1.42096 * 106.40615 * 150.33128 * 11 10 9 14 14 C 1.76201 * 107.21737 * 263.87370 * 11 10 9 15 15 C 1.38641 * 119.74953 * 269.72658 * 14 11 10 16 16 C 1.37613 * 120.24959 * 179.72126 * 15 14 11 17 17 C 1.40720 * 119.74451 * 0.57196 * 16 15 14 18 18 C 1.41394 * 120.24548 * 179.68164 * 17 16 15 19 19 H 1.07997 * 120.00190 * 155.83455 * 18 17 16 20 20 C 1.39951 * 120.00055 * 335.83785 * 18 17 16 21 21 N 1.30820 * 119.99535 * 341.02247 * 20 18 17 22 22 Si 1.86800 * 120.00089 * 161.02187 * 20 18 17 23 23 H 1.48504 * 109.46706 * 94.80613 * 22 20 18 24 24 H 1.48493 * 109.47178 * 214.80286 * 22 20 18 25 25 H 1.48497 * 109.47258 * 334.80569 * 22 20 18 26 26 C 1.40710 * 119.51078 * 359.69680 * 17 16 15 27 27 C 1.37618 * 119.74809 * 0.02562 * 26 17 16 28 28 H 1.08998 * 109.47303 * 306.85501 * 1 2 3 29 29 H 1.09002 * 109.47168 * 186.84898 * 1 2 3 30 30 H 1.09007 * 109.46669 * 66.85704 * 1 2 3 31 31 H 1.09007 * 109.51856 * 291.95202 * 4 2 1 32 32 H 1.09007 * 109.51832 * 52.04881 * 4 2 1 33 33 H 1.08995 * 109.46967 * 59.99956 * 7 6 5 34 34 H 1.08999 * 109.47010 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.46985 * 299.99964 * 7 6 5 36 36 H 1.09001 * 109.46498 * 60.00564 * 8 6 5 37 37 H 1.08997 * 109.46918 * 180.02562 * 8 6 5 38 38 H 1.08991 * 109.47430 * 300.00712 * 8 6 5 39 39 H 1.09002 * 109.68385 * 67.41682 * 9 6 5 40 40 H 1.08995 * 109.68722 * 187.97416 * 9 6 5 41 41 H 1.08004 * 119.87094 * 359.97438 * 15 14 11 42 42 H 1.08003 * 120.12800 * 180.27554 * 16 15 14 43 43 H 0.96999 * 119.99771 * 180.02562 * 21 20 18 44 44 H 1.08006 * 120.13207 * 180.02562 * 26 17 16 45 45 H 1.07997 * 119.87857 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0462 -0.7330 1.2434 5 8 3.4635 -0.8908 1.1424 6 6 3.8859 -1.6896 0.0346 7 6 5.4083 -1.8398 0.0639 8 6 3.2343 -3.0711 0.1228 9 6 3.4639 -1.0056 -1.2709 10 7 2.0257 -0.7044 -1.1931 11 16 0.9952 -1.1457 -2.4120 12 8 1.6774 -2.1291 -3.1780 13 8 -0.2698 -1.3724 -1.8057 14 6 0.7996 0.2554 -3.4624 15 6 -0.2181 1.1639 -3.2150 16 6 -0.3767 2.2648 -4.0254 17 6 0.4913 2.4601 -5.1156 18 6 0.3337 3.5840 -5.9590 19 1 1.1745 3.9562 -6.5254 20 6 -0.9118 4.2141 -6.0597 21 7 -1.9965 3.5813 -5.6930 22 14 -1.0255 5.9586 -6.7179 23 1 -1.3193 5.9205 -8.1730 24 1 -2.1123 6.6840 -6.0123 25 1 0.2647 6.6582 -6.4915 26 6 1.5171 1.5286 -5.3604 27 6 1.6607 0.4379 -4.5335 28 1 -0.3634 0.6164 0.8223 29 1 -0.3633 -1.0203 0.1226 30 1 -0.3633 0.4039 -0.9451 31 1 1.8072 -0.1518 2.1342 32 1 1.5739 -1.7131 1.3107 33 1 5.7079 -2.3220 0.9942 34 1 5.7295 -2.4492 -0.7808 35 1 5.8718 -0.8554 -0.0008 36 1 2.1499 -2.9633 0.1000 37 1 3.5572 -3.6796 -0.7219 38 1 3.5319 -3.5544 1.0532 39 1 4.0262 -0.0807 -1.3992 40 1 3.6545 -1.6714 -2.1125 41 1 -0.8863 1.0092 -2.3807 42 1 -1.1674 2.9736 -3.8282 43 1 -2.8598 4.0179 -5.7632 44 1 2.1893 1.6688 -6.1941 45 1 2.4470 -0.2786 -4.7197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645715047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:02 Heat of formation + Delta-G solvation = -91.372854 kcal Electronic energy + Delta-G solvation = -28903.458911 eV Core-core repulsion = 25013.047021 eV Total energy + Delta-G solvation = -3890.411890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.92690 -37.61917 -36.95906 -35.35522 -34.97801 -34.07349 -33.87545 -30.43595 -30.24726 -29.49673 -27.67052 -26.08559 -25.77647 -25.32796 -22.17487 -21.51814 -21.19040 -19.69383 -18.37927 -17.65302 -16.98245 -16.81340 -16.51067 -15.81879 -15.50574 -15.11735 -14.77848 -14.51847 -14.28126 -14.21023 -13.58574 -13.44127 -13.28187 -12.87246 -12.50689 -12.45109 -12.35222 -12.17622 -12.00504 -11.85262 -11.79986 -11.75333 -11.50477 -11.48886 -11.40527 -11.32808 -11.24341 -10.93515 -10.86693 -10.64025 -10.47009 -10.17674 -9.80781 -9.74780 -9.51649 -9.45048 -8.52888 -7.97265 -7.73630 -7.17732 -4.82119 1.14386 2.23449 2.84894 2.87283 2.89632 2.94228 3.49957 3.64326 3.68503 4.20725 4.47892 4.61467 4.77216 4.81499 4.91347 5.05892 5.08614 5.24361 5.34276 5.44275 5.49618 5.54864 5.62420 5.65051 5.71531 5.76749 5.81649 5.89694 5.95091 6.01266 6.04486 6.15903 6.29598 6.32786 6.60321 6.65743 6.72629 6.80001 6.96880 7.03442 7.19206 7.30969 7.39932 7.59706 7.73981 7.94001 8.28670 8.48406 8.62272 9.74115 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.003296 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.448519 B = 8492.702404 C = 8596.569096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.123 3.877 3 H 0.080 0.920 4 C 0.053 3.947 5 O -0.372 6.372 6 C 0.102 3.898 7 C -0.136 4.136 8 C -0.180 4.180 9 C 0.098 3.902 10 N -1.002 6.002 11 S 2.688 3.312 12 O -0.985 6.985 13 O -0.976 6.976 14 C -0.788 4.788 15 C -0.019 4.019 16 C -0.183 4.183 17 C 0.140 3.860 18 C -0.435 4.435 19 H 0.088 0.912 20 C 0.073 3.927 21 N -0.763 5.763 22 Si 0.916 3.084 23 H -0.266 1.266 24 H -0.271 1.271 25 H -0.256 1.256 26 C -0.239 4.239 27 C 0.002 3.998 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.290 0.710 44 H 0.100 0.900 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.300 -4.539 10.461 13.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.017 3.983 3 H 0.098 0.902 4 C -0.025 4.025 5 O -0.291 6.291 6 C 0.061 3.939 7 C -0.194 4.194 8 C -0.237 4.237 9 C -0.028 4.028 10 N -0.838 5.838 11 S 2.791 3.209 12 O -0.976 6.976 13 O -0.967 6.967 14 C -0.885 4.885 15 C -0.039 4.039 16 C -0.203 4.203 17 C 0.136 3.864 18 C -0.462 4.462 19 H 0.106 0.894 20 C -0.150 4.150 21 N -0.385 5.385 22 Si 0.739 3.261 23 H -0.191 1.191 24 H -0.195 1.195 25 H -0.180 1.180 26 C -0.259 4.259 27 C -0.018 4.018 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.139 0.861 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.777 -5.323 10.529 13.606 hybrid contribution -0.335 1.448 -0.830 1.702 sum 6.442 -3.874 9.699 12.271 Atomic orbital electron populations 1.22763 0.92091 1.05103 1.04076 1.21601 0.95366 0.96409 0.84940 0.90222 1.23035 0.81728 1.00205 0.97578 1.87943 1.21874 1.71471 1.47802 1.21806 0.95286 0.90212 0.86630 1.21728 0.92024 1.02879 1.02777 1.22410 1.01772 0.96689 1.02849 1.22070 0.81089 1.01023 0.98637 1.58098 1.18322 1.74090 1.33254 1.01472 0.72548 0.74717 0.72212 1.93442 1.75358 1.58429 1.70342 1.93579 1.41113 1.86024 1.75976 1.29181 1.13802 1.26150 1.19322 1.20328 0.93442 0.92948 0.97154 1.21321 1.03278 0.99122 0.96610 1.17840 0.89188 0.89841 0.89543 1.19944 0.96026 1.09286 1.20961 0.89401 1.26151 0.95091 1.00177 0.93571 1.69828 0.99628 1.37133 1.31892 0.86153 0.79692 0.80685 0.79576 1.19072 1.19542 1.17963 1.21016 1.04745 0.97465 1.02700 1.20137 0.94413 0.95284 0.91983 0.91857 0.89154 0.89783 0.88111 0.92285 0.91616 0.90737 0.91526 0.92053 0.90980 0.91724 0.90778 0.88022 0.87587 0.86079 0.89901 0.88175 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 7.56 37.16 0.28 -2.39 16 2 C 0.12 1.73 3.71 -67.42 -0.25 1.48 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.05 0.64 5.90 37.31 0.22 0.86 16 5 O -0.37 -4.86 10.23 -35.23 -0.36 -5.22 16 6 C 0.10 1.24 1.11 -90.46 -0.10 1.14 16 7 C -0.14 -1.30 8.85 37.16 0.33 -0.97 16 8 C -0.18 -2.12 8.09 37.16 0.30 -1.82 16 9 C 0.10 1.36 5.40 -3.53 -0.02 1.34 16 10 N -1.00 -15.88 2.86 -106.04 -0.30 -16.19 16 11 S 2.69 52.30 5.32 -107.50 -0.57 51.73 16 12 O -0.98 -20.76 15.75 -57.17 -0.90 -21.66 16 13 O -0.98 -19.95 12.43 -57.17 -0.71 -20.66 16 14 C -0.79 -17.47 6.00 -39.28 -0.24 -17.71 16 15 C -0.02 -0.43 8.96 -39.66 -0.36 -0.79 16 16 C -0.18 -4.55 8.70 -38.87 -0.34 -4.89 16 17 C 0.14 3.53 5.57 -106.83 -0.60 2.94 16 18 C -0.44 -10.63 9.05 -37.74 -0.34 -10.97 16 19 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 20 C 0.07 1.67 5.12 -17.34 -0.09 1.58 16 21 N -0.76 -18.18 11.01 55.55 0.61 -17.57 16 22 Si 0.92 16.85 29.60 -169.99 -5.03 11.82 16 23 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 24 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 25 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 26 C -0.24 -5.66 9.80 -38.88 -0.38 -6.04 16 27 C 0.00 0.04 9.49 -39.66 -0.38 -0.33 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 1.38 6.62 -51.93 -0.34 1.04 16 30 H 0.08 1.43 3.29 -51.92 -0.17 1.25 16 31 H 0.10 0.99 8.14 -51.92 -0.42 0.56 16 32 H 0.06 0.70 6.23 -51.93 -0.32 0.38 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.80 6.12 -51.93 -0.32 0.48 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.10 1.42 6.82 -51.93 -0.35 1.07 16 41 H 0.11 2.23 5.51 -52.48 -0.29 1.94 16 42 H 0.12 3.03 6.18 -52.48 -0.32 2.71 16 43 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 44 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 45 H 0.10 2.08 7.60 -52.49 -0.40 1.68 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -28.96 357.72 -10.13 -39.09 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.30 Total: 9.82 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: -1.95 Total: -36.57 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.31 Total: -33.75 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -1.97 Total: -47.53 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Atomic # 16 Polarization: 52.30 SS G_CDS: -0.57 Total: 51.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.96 -10.13 -39.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645715047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.281 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds