Wall clock time and date at job start Tue Mar 31 2020 23:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.67739 * 2 1 4 4 C 1.53290 * 109.67903 * 120.51778 * 2 1 3 5 5 O 1.42963 * 109.22821 * 172.02775 * 4 2 1 6 6 C 1.42964 * 114.16090 * 297.42025 * 5 4 2 7 7 C 1.53006 * 109.51018 * 182.49938 * 6 5 4 8 8 C 1.52998 * 109.51423 * 302.59780 * 6 5 4 9 9 C 1.53296 * 109.22584 * 62.57756 * 6 5 4 10 10 N 1.47148 * 108.38231 * 307.69719 * 9 6 5 11 11 S 1.65601 * 120.98303 * 230.55705 * 10 9 6 12 12 O 1.42104 * 106.40303 * 17.40654 * 11 10 9 13 13 O 1.42096 * 106.40615 * 150.33128 * 11 10 9 14 14 C 1.76201 * 107.21737 * 263.87370 * 11 10 9 15 15 C 1.38641 * 119.74953 * 269.72658 * 14 11 10 16 16 C 1.37613 * 120.24959 * 179.72126 * 15 14 11 17 17 C 1.40720 * 119.74451 * 0.57196 * 16 15 14 18 18 C 1.41394 * 120.24548 * 179.68164 * 17 16 15 19 19 H 1.07997 * 120.00190 * 155.83455 * 18 17 16 20 20 C 1.39951 * 120.00055 * 335.83785 * 18 17 16 21 21 N 1.30820 * 119.99535 * 341.02247 * 20 18 17 22 22 Si 1.86800 * 120.00089 * 161.02187 * 20 18 17 23 23 H 1.48504 * 109.46706 * 94.80613 * 22 20 18 24 24 H 1.48493 * 109.47178 * 214.80286 * 22 20 18 25 25 H 1.48497 * 109.47258 * 334.80569 * 22 20 18 26 26 C 1.40710 * 119.51078 * 359.69680 * 17 16 15 27 27 C 1.37618 * 119.74809 * 0.02562 * 26 17 16 28 28 H 1.08998 * 109.47303 * 306.85501 * 1 2 3 29 29 H 1.09002 * 109.47168 * 186.84898 * 1 2 3 30 30 H 1.09007 * 109.46669 * 66.85704 * 1 2 3 31 31 H 1.09007 * 109.51856 * 291.95202 * 4 2 1 32 32 H 1.09007 * 109.51832 * 52.04881 * 4 2 1 33 33 H 1.08995 * 109.46967 * 59.99956 * 7 6 5 34 34 H 1.08999 * 109.47010 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.46985 * 299.99964 * 7 6 5 36 36 H 1.09001 * 109.46498 * 60.00564 * 8 6 5 37 37 H 1.08997 * 109.46918 * 180.02562 * 8 6 5 38 38 H 1.08991 * 109.47430 * 300.00712 * 8 6 5 39 39 H 1.09002 * 109.68385 * 67.41682 * 9 6 5 40 40 H 1.08995 * 109.68722 * 187.97416 * 9 6 5 41 41 H 1.08004 * 119.87094 * 359.97438 * 15 14 11 42 42 H 1.08003 * 120.12800 * 180.27554 * 16 15 14 43 43 H 0.96999 * 119.99771 * 180.02562 * 21 20 18 44 44 H 1.08006 * 120.13207 * 180.02562 * 26 17 16 45 45 H 1.07997 * 119.87857 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0462 -0.7330 1.2434 5 8 3.4635 -0.8908 1.1424 6 6 3.8859 -1.6896 0.0346 7 6 5.4083 -1.8398 0.0639 8 6 3.2343 -3.0711 0.1228 9 6 3.4639 -1.0056 -1.2709 10 7 2.0257 -0.7044 -1.1931 11 16 0.9952 -1.1457 -2.4120 12 8 1.6774 -2.1291 -3.1780 13 8 -0.2698 -1.3724 -1.8057 14 6 0.7996 0.2554 -3.4624 15 6 -0.2181 1.1639 -3.2150 16 6 -0.3767 2.2648 -4.0254 17 6 0.4913 2.4601 -5.1156 18 6 0.3337 3.5840 -5.9590 19 1 1.1745 3.9562 -6.5254 20 6 -0.9118 4.2141 -6.0597 21 7 -1.9965 3.5813 -5.6930 22 14 -1.0255 5.9586 -6.7179 23 1 -1.3193 5.9205 -8.1730 24 1 -2.1123 6.6840 -6.0123 25 1 0.2647 6.6582 -6.4915 26 6 1.5171 1.5286 -5.3604 27 6 1.6607 0.4379 -4.5335 28 1 -0.3634 0.6164 0.8223 29 1 -0.3633 -1.0203 0.1226 30 1 -0.3633 0.4039 -0.9451 31 1 1.8072 -0.1518 2.1342 32 1 1.5739 -1.7131 1.3107 33 1 5.7079 -2.3220 0.9942 34 1 5.7295 -2.4492 -0.7808 35 1 5.8718 -0.8554 -0.0008 36 1 2.1499 -2.9633 0.1000 37 1 3.5572 -3.6796 -0.7219 38 1 3.5319 -3.5544 1.0532 39 1 4.0262 -0.0807 -1.3992 40 1 3.6545 -1.6714 -2.1125 41 1 -0.8863 1.0092 -2.3807 42 1 -1.1674 2.9736 -3.8282 43 1 -2.8598 4.0179 -5.7632 44 1 2.1893 1.6688 -6.1941 45 1 2.4470 -0.2786 -4.7197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645715047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:01 Heat of formation + Delta-G solvation = -108.728453 kcal Electronic energy + Delta-G solvation = -28904.211506 eV Core-core repulsion = 25013.047021 eV Total energy + Delta-G solvation = -3891.164485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.95017 -39.42347 -38.52307 -36.88834 -36.25427 -35.83235 -34.86474 -32.13334 -31.51162 -31.26377 -28.54369 -27.66256 -27.03980 -26.40000 -23.35174 -23.25034 -22.99695 -20.75708 -19.84436 -19.45479 -18.51911 -18.13854 -17.73735 -17.19806 -16.91309 -16.34664 -15.92243 -15.87406 -15.75913 -15.49812 -15.20165 -14.92752 -14.58070 -14.29930 -14.11891 -13.87323 -13.57297 -13.32740 -13.25161 -13.15391 -13.00402 -12.96819 -12.93606 -12.85728 -12.81383 -12.69659 -12.57990 -12.39171 -12.06137 -11.98872 -11.85778 -11.57418 -11.31679 -11.20721 -11.08124 -10.95302 -9.87342 -9.64618 -9.58438 -8.90498 -6.67120 -0.39890 0.46436 1.02157 1.34424 1.40621 1.52077 2.06216 2.11335 2.49076 2.76860 2.89555 3.41946 3.46768 3.64544 3.70909 3.93094 3.97548 4.04637 4.18761 4.21878 4.27268 4.33633 4.57591 4.64782 4.66855 4.74735 4.77905 4.82316 4.82986 4.89953 4.92194 5.00551 5.04674 5.05105 5.13241 5.21559 5.24426 5.39211 5.46374 5.54373 5.56097 5.63181 5.75666 5.90697 6.12513 6.24184 6.45950 6.65333 6.78224 8.05229 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.003296 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.448519 B = 8492.702404 C = 8596.569096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.119 3.881 3 H 0.084 0.916 4 C 0.055 3.945 5 O -0.377 6.377 6 C 0.101 3.899 7 C -0.134 4.134 8 C -0.182 4.182 9 C 0.088 3.912 10 N -0.996 5.996 11 S 2.713 3.287 12 O -1.001 7.001 13 O -0.987 6.987 14 C -0.801 4.801 15 C -0.021 4.021 16 C -0.208 4.208 17 C 0.111 3.889 18 C -0.466 4.466 19 H 0.093 0.907 20 C 0.035 3.965 21 N -0.796 5.796 22 Si 0.992 3.008 23 H -0.259 1.259 24 H -0.262 1.262 25 H -0.253 1.253 26 C -0.257 4.257 27 C -0.004 4.004 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.129 0.871 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.299 0.701 44 H 0.111 0.889 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.376 -4.397 11.832 15.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.013 3.987 3 H 0.102 0.898 4 C -0.023 4.023 5 O -0.296 6.296 6 C 0.060 3.940 7 C -0.191 4.191 8 C -0.239 4.239 9 C -0.038 4.038 10 N -0.834 5.834 11 S 2.812 3.188 12 O -0.991 6.991 13 O -0.978 6.978 14 C -0.894 4.894 15 C -0.041 4.041 16 C -0.228 4.228 17 C 0.108 3.892 18 C -0.493 4.493 19 H 0.111 0.889 20 C -0.185 4.185 21 N -0.419 5.419 22 Si 0.811 3.189 23 H -0.183 1.183 24 H -0.186 1.186 25 H -0.177 1.177 26 C -0.278 4.278 27 C -0.024 4.024 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.147 0.853 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.129 0.871 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.849 -5.172 11.872 15.143 hybrid contribution -0.642 1.282 -1.150 1.838 sum 7.207 -3.890 10.722 13.492 Atomic orbital electron populations 1.22721 0.92564 1.05027 1.03861 1.21827 0.95066 0.96833 0.84988 0.89810 1.23125 0.81383 1.00546 0.97277 1.87951 1.22195 1.71610 1.47881 1.21932 0.96944 0.89895 0.85246 1.21757 0.89864 1.03497 1.04018 1.22441 1.00712 0.96764 1.03978 1.22366 0.79669 1.01710 1.00021 1.57811 1.18956 1.74167 1.32498 1.00802 0.72490 0.73505 0.72019 1.93413 1.75694 1.58629 1.71410 1.93577 1.42392 1.85925 1.75870 1.29744 1.13039 1.26538 1.20079 1.20562 0.93803 0.92558 0.97155 1.21352 1.03781 1.00119 0.97567 1.18196 0.90009 0.90831 0.90208 1.20244 0.97148 1.10073 1.21795 0.88921 1.27049 0.94071 1.04039 0.93321 1.69862 1.00448 1.39011 1.32588 0.85032 0.79810 0.75011 0.79043 1.18328 1.18615 1.17666 1.21252 1.05041 0.97909 1.03572 1.20429 0.94917 0.95279 0.91782 0.88786 0.89950 0.92394 0.85339 0.92028 0.90492 0.89389 0.91299 0.93635 0.90635 0.90008 0.90062 0.88235 0.86142 0.87132 0.88955 0.87060 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.14 7.56 71.98 0.54 -4.60 16 2 C 0.12 3.14 3.71 44.96 0.17 3.30 16 3 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.05 1.18 5.90 72.08 0.43 1.61 16 5 O -0.38 -8.80 10.23 -148.98 -1.52 -10.32 16 6 C 0.10 2.21 1.11 -10.69 -0.01 2.20 16 7 C -0.13 -2.17 8.85 71.98 0.64 -1.53 16 8 C -0.18 -3.89 8.09 71.98 0.58 -3.31 16 9 C 0.09 2.30 5.40 86.35 0.47 2.77 16 10 N -1.00 -30.45 2.86 -489.39 -1.40 -31.85 16 11 S 2.71 104.65 5.32 -56.49 -0.30 104.35 16 12 O -1.00 -41.64 15.75 -128.00 -2.02 -43.66 16 13 O -0.99 -40.17 12.43 -128.00 -1.59 -41.76 16 14 C -0.80 -35.93 6.00 22.46 0.13 -35.80 16 15 C -0.02 -1.00 8.96 22.22 0.20 -0.80 16 16 C -0.21 -10.75 8.70 22.73 0.20 -10.55 16 17 C 0.11 5.82 5.57 -21.29 -0.12 5.70 16 18 C -0.47 -23.41 9.05 23.46 0.21 -23.20 16 19 H 0.09 4.38 7.91 -2.91 -0.02 4.35 16 20 C 0.03 1.62 5.12 85.26 0.44 2.06 16 21 N -0.80 -38.86 11.01 21.83 0.24 -38.62 16 22 Si 0.99 34.42 29.60 68.60 2.03 36.45 16 23 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 24 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 25 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 26 C -0.26 -12.53 9.80 22.73 0.22 -12.31 16 27 C 0.00 -0.20 9.49 22.22 0.21 0.01 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 29 H 0.08 2.43 6.62 -2.39 -0.02 2.42 16 30 H 0.06 1.94 3.29 -2.38 -0.01 1.94 16 31 H 0.13 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.06 1.32 6.23 -2.38 -0.01 1.30 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.04 1.11 6.12 -2.39 -0.01 1.10 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.10 2.65 6.82 -2.39 -0.02 2.64 16 41 H 0.12 5.20 5.51 -2.91 -0.02 5.18 16 42 H 0.11 5.82 6.18 -2.91 -0.02 5.80 16 43 H 0.30 12.93 8.30 -92.71 -0.77 12.16 16 44 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 45 H 0.12 4.93 7.60 -2.91 -0.02 4.91 16 Total: -1.00 -63.20 357.72 0.75 -62.45 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 1.00 Total: 37.41 kcal Atomic # 6 Polarization: -78.75 SS G_CDS: 4.30 Total: -74.44 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -1.16 Total: -70.48 kcal Atomic # 8 Polarization: -90.61 SS G_CDS: -5.13 Total: -95.74 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.45 kcal Atomic # 16 Polarization: 104.65 SS G_CDS: -0.30 Total: 104.35 kcal Total: -63.20 0.75 -62.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645715047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.282 kcal (2) G-P(sol) polarization free energy of solvation -63.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds