Wall clock time and date at job start Tue Mar 31 2020 23:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.48134 * 2 1 4 4 C 1.53092 * 109.48318 * 120.02542 * 2 1 3 5 5 C 1.53174 * 109.16685 * 177.59412 * 4 2 1 6 6 C 1.53188 * 109.03086 * 303.01800 * 5 4 2 7 7 C 1.53095 * 109.16297 * 56.98037 * 6 5 4 8 8 H 1.08999 * 109.47665 * 62.38455 * 7 6 5 9 9 C 1.52995 * 109.47798 * 182.40574 * 7 6 5 10 10 N 1.46504 * 109.47366 * 184.99952 * 9 7 6 11 11 S 1.65596 * 120.00158 * 164.99900 * 10 9 7 12 12 O 1.42104 * 106.39883 * 178.54085 * 11 10 9 13 13 O 1.42099 * 106.40227 * 311.45909 * 11 10 9 14 14 C 1.76198 * 107.21901 * 65.00371 * 11 10 9 15 15 C 1.38631 * 119.74981 * 269.72818 * 14 11 10 16 16 C 1.37614 * 120.25140 * 179.76241 * 15 14 11 17 17 C 1.40718 * 119.74350 * 0.48214 * 16 15 14 18 18 C 1.41397 * 120.24582 * 179.78660 * 17 16 15 19 19 H 1.08000 * 120.00198 * 204.36869 * 18 17 16 20 20 C 1.39947 * 119.99894 * 24.37560 * 18 17 16 21 21 N 1.30824 * 119.99961 * 17.87185 * 20 18 17 22 22 Si 1.86794 * 119.99801 * 197.87686 * 20 18 17 23 23 H 1.48499 * 109.47603 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47129 * 119.99718 * 22 20 18 25 25 H 1.48498 * 109.46961 * 239.99608 * 22 20 18 26 26 C 1.40717 * 119.50860 * 359.77315 * 17 16 15 27 27 C 1.37618 * 119.74820 * 359.97438 * 26 17 16 28 28 O 1.42898 * 109.41304 * 302.38796 * 7 6 5 29 29 H 1.09002 * 109.47466 * 299.97657 * 1 2 3 30 30 H 1.09004 * 109.47395 * 59.97585 * 1 2 3 31 31 H 1.09002 * 109.47254 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.52104 * 57.68078 * 4 2 1 33 33 H 1.09000 * 109.57217 * 297.52990 * 4 2 1 34 34 H 1.08996 * 109.54571 * 183.15600 * 5 4 2 35 35 H 1.09001 * 109.54469 * 62.88092 * 5 4 2 36 36 H 1.08999 * 109.52088 * 297.07181 * 6 5 4 37 37 H 1.09000 * 109.52050 * 176.88797 * 6 5 4 38 38 H 1.09003 * 109.47248 * 64.99979 * 9 7 6 39 39 H 1.09000 * 109.47238 * 305.00063 * 9 7 6 40 40 H 0.97003 * 119.99258 * 345.00827 * 10 9 7 41 41 H 1.08005 * 119.87637 * 359.97438 * 15 14 11 42 42 H 1.07998 * 120.13414 * 180.26990 * 16 15 14 43 43 H 0.96993 * 120.00157 * 180.02562 * 21 20 18 44 44 H 1.08004 * 120.12562 * 180.02562 * 26 17 16 45 45 H 1.07991 * 119.87779 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7707 1.2122 6 6 4.0176 -1.4601 -0.0809 7 6 3.4306 -0.7094 -1.2791 8 1 3.8193 0.3088 -1.2959 9 6 3.8226 -1.4267 -2.5723 10 7 3.3632 -0.6449 -3.7230 11 16 3.9562 -0.9697 -5.2347 12 8 3.2990 -0.0770 -6.1238 13 8 5.3697 -1.0374 -5.1052 14 6 3.4181 -2.5903 -5.6689 15 6 4.2077 -3.6851 -5.3530 16 6 3.7952 -4.9558 -5.6829 17 6 2.5714 -5.1407 -6.3525 18 6 2.1394 -6.4413 -6.7006 19 1 1.4496 -6.5799 -7.5200 20 6 2.6056 -7.5488 -5.9833 21 7 3.1437 -7.3839 -4.8024 22 14 2.4595 -9.2624 -6.7122 23 1 1.8185 -9.1788 -8.0491 24 1 3.8123 -9.8597 -6.8479 25 1 1.6310 -10.1113 -5.8188 26 6 1.7807 -4.0217 -6.6729 27 6 2.2107 -2.7605 -6.3286 28 8 2.0065 -0.6743 -1.1663 29 1 -0.3634 0.5135 0.8902 30 1 -0.3634 0.5142 -0.8898 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6443 -1.7373 1.2710 33 1 1.7148 -0.1851 2.1404 34 1 3.9392 -1.3325 2.0707 35 1 3.9689 0.2437 1.2408 36 1 3.6613 -2.4902 -0.0862 37 1 5.1058 -1.4498 -0.1421 38 1 3.3596 -2.4133 -2.5953 39 1 4.9066 -1.5330 -2.6147 40 1 2.7118 0.0631 -3.5993 41 1 5.1487 -3.5404 -4.8429 42 1 4.4098 -5.8076 -5.4320 43 1 3.4672 -8.1515 -4.3053 44 1 0.8395 -4.1521 -7.1864 45 1 1.6053 -1.9003 -6.5730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645932743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:25 Heat of formation + Delta-G solvation = -130.023575 kcal Electronic energy + Delta-G solvation = -27604.167183 eV Core-core repulsion = 23712.079272 eV Total energy + Delta-G solvation = -3892.087911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.71629 -37.54001 -36.46632 -35.29736 -35.07657 -34.01204 -33.75127 -32.40031 -30.22687 -29.43186 -28.52950 -25.79256 -25.70790 -22.81377 -21.96028 -21.45029 -21.09221 -20.47092 -18.74721 -17.59155 -17.04409 -16.82155 -16.47450 -15.86671 -15.78382 -15.47053 -14.85973 -14.41643 -14.29794 -14.12387 -13.46539 -13.37487 -13.20644 -13.13733 -12.87961 -12.60458 -12.39142 -12.29020 -12.15326 -12.03952 -11.75970 -11.48903 -11.43665 -11.33369 -11.26988 -11.22953 -11.16334 -11.13632 -10.87866 -10.78938 -10.37864 -10.36758 -9.73571 -9.61571 -9.48770 -9.46840 -8.96354 -7.92717 -7.66666 -7.12430 -4.77365 1.31791 2.28131 2.89105 2.91758 2.95961 2.96822 3.53068 3.68217 3.79764 4.25887 4.50842 4.57372 4.60071 4.68938 4.79093 4.99008 5.05718 5.16466 5.25542 5.28456 5.40040 5.43004 5.46393 5.56744 5.63493 5.71092 5.79325 5.89909 5.93020 5.95503 6.04689 6.10672 6.13996 6.16400 6.27968 6.70663 6.73895 6.94728 7.08385 7.22585 7.36326 7.41457 7.46654 7.66632 7.80216 7.99967 8.34697 8.54297 8.68189 9.79083 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.003402 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.970570 B = 8228.995772 C = 9554.231860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 H 0.055 0.945 4 C -0.151 4.151 5 C -0.121 4.121 6 C -0.153 4.153 7 C 0.088 3.912 8 H 0.064 0.936 9 C 0.130 3.870 10 N -1.122 6.122 11 S 2.694 3.306 12 O -0.987 6.987 13 O -0.986 6.986 14 C -0.785 4.785 15 C -0.017 4.017 16 C -0.183 4.183 17 C 0.140 3.860 18 C -0.436 4.436 19 H 0.087 0.913 20 C 0.073 3.927 21 N -0.766 5.766 22 Si 0.916 3.084 23 H -0.257 1.257 24 H -0.268 1.268 25 H -0.271 1.271 26 C -0.239 4.239 27 C 0.004 3.996 28 O -0.368 6.368 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.413 0.587 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.288 0.712 44 H 0.099 0.901 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 8.233 12.541 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.073 0.927 4 C -0.189 4.189 5 C -0.158 4.158 6 C -0.191 4.191 7 C 0.029 3.971 8 H 0.081 0.919 9 C 0.004 3.996 10 N -0.879 5.879 11 S 2.793 3.207 12 O -0.977 6.977 13 O -0.977 6.977 14 C -0.881 4.881 15 C -0.038 4.038 16 C -0.203 4.203 17 C 0.136 3.864 18 C -0.463 4.463 19 H 0.106 0.894 20 C -0.149 4.149 21 N -0.389 5.389 22 Si 0.739 3.261 23 H -0.180 1.180 24 H -0.192 1.192 25 H -0.196 1.196 26 C -0.260 4.260 27 C -0.016 4.016 28 O -0.288 6.288 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.246 0.754 41 H 0.121 0.879 42 H 0.140 0.860 43 H 0.099 0.901 44 H 0.118 0.882 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.372 8.491 12.116 14.799 hybrid contribution -0.580 -1.140 0.279 1.309 sum -0.952 7.351 12.395 14.442 Atomic orbital electron populations 1.21764 0.93139 1.03127 1.02244 1.22061 0.95055 0.94823 0.85274 0.92723 1.22241 0.96174 1.02175 0.98321 1.21578 0.95587 1.00855 0.97811 1.22198 1.01473 1.01039 0.94414 1.22269 0.81789 0.98802 0.94266 0.91854 1.21235 0.99702 0.95304 0.83403 1.55599 1.60267 1.47982 1.24016 1.01166 0.73215 0.74650 0.71656 1.93488 1.76653 1.65014 1.62587 1.93475 1.30012 1.88072 1.86114 1.29152 1.10730 1.18841 1.29425 1.20256 0.95820 0.92430 0.95266 1.21328 0.97544 0.95414 1.06008 1.17855 0.89707 0.92476 0.86348 1.19969 1.22424 0.90572 1.13382 0.89444 1.26122 0.92444 1.02558 0.93783 1.69824 1.26141 1.34107 1.08815 0.86119 0.79338 0.80068 0.80562 1.17990 1.19243 1.19562 1.21047 1.00753 0.92605 1.11557 1.20160 0.92355 0.96690 0.92418 1.88011 1.20378 1.77825 1.42566 0.91387 0.91716 0.91654 0.90844 0.91176 0.91358 0.91944 0.90288 0.90374 0.90406 0.89264 0.75434 0.87931 0.85995 0.90101 0.88235 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.56 37.16 0.36 -0.96 16 2 C 0.09 0.86 3.26 -26.69 -0.09 0.77 16 3 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.15 -1.32 5.42 -26.59 -0.14 -1.47 16 5 C -0.12 -1.02 6.03 -26.54 -0.16 -1.18 16 6 C -0.15 -1.55 5.42 -26.59 -0.14 -1.69 16 7 C 0.09 1.05 2.73 -26.68 -0.07 0.98 16 8 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 9 C 0.13 1.87 5.89 -4.04 -0.02 1.85 16 10 N -1.12 -17.68 5.96 -10.61 -0.06 -17.74 16 11 S 2.69 52.73 5.73 -107.50 -0.62 52.11 16 12 O -0.99 -21.26 17.26 -57.17 -0.99 -22.24 16 13 O -0.99 -21.06 16.72 -57.17 -0.96 -22.02 16 14 C -0.79 -17.53 5.97 -39.29 -0.23 -17.76 16 15 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 16 16 C -0.18 -4.58 8.70 -38.87 -0.34 -4.92 16 17 C 0.14 3.57 5.58 -106.82 -0.60 2.98 16 18 C -0.44 -10.78 9.05 -37.74 -0.34 -11.13 16 19 H 0.09 2.06 7.91 -52.49 -0.42 1.64 16 20 C 0.07 1.68 5.14 -17.34 -0.09 1.59 16 21 N -0.77 -18.16 10.95 55.55 0.61 -17.55 16 22 Si 0.92 17.08 29.59 -169.99 -5.03 12.05 16 23 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 24 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 25 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 26 C -0.24 -5.75 9.80 -38.87 -0.38 -6.13 16 27 C 0.00 0.09 9.49 -39.66 -0.38 -0.29 16 28 O -0.37 -4.80 9.85 -35.23 -0.35 -5.14 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 1.22 7.75 -51.93 -0.40 0.81 16 40 H 0.41 5.81 8.51 -34.47 -0.29 5.51 16 41 H 0.10 2.18 7.59 -52.48 -0.40 1.78 16 42 H 0.12 3.08 6.15 -52.49 -0.32 2.76 16 43 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 44 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 45 H 0.10 2.16 7.60 -52.49 -0.40 1.77 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -30.21 378.50 -11.56 -41.77 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -6.86 Total: 11.20 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: -3.01 Total: -38.13 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.55 Total: -35.30 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -2.29 Total: -49.40 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Atomic # 16 Polarization: 52.73 SS G_CDS: -0.62 Total: 52.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.21 -11.56 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645932743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.255 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds