Wall clock time and date at job start Tue Mar 31 2020 23:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.48134 * 2 1 4 4 C 1.53092 * 109.48318 * 120.02542 * 2 1 3 5 5 C 1.53174 * 109.16685 * 177.59412 * 4 2 1 6 6 C 1.53188 * 109.03086 * 303.01800 * 5 4 2 7 7 C 1.53095 * 109.16297 * 56.98037 * 6 5 4 8 8 H 1.08999 * 109.47665 * 62.38455 * 7 6 5 9 9 C 1.52995 * 109.47798 * 182.40574 * 7 6 5 10 10 N 1.46504 * 109.47366 * 184.99952 * 9 7 6 11 11 S 1.65596 * 120.00158 * 164.99900 * 10 9 7 12 12 O 1.42104 * 106.39883 * 178.54085 * 11 10 9 13 13 O 1.42099 * 106.40227 * 311.45909 * 11 10 9 14 14 C 1.76198 * 107.21901 * 65.00371 * 11 10 9 15 15 C 1.38631 * 119.74981 * 269.72818 * 14 11 10 16 16 C 1.37614 * 120.25140 * 179.76241 * 15 14 11 17 17 C 1.40718 * 119.74350 * 0.48214 * 16 15 14 18 18 C 1.41397 * 120.24582 * 179.78660 * 17 16 15 19 19 H 1.08000 * 120.00198 * 204.36869 * 18 17 16 20 20 C 1.39947 * 119.99894 * 24.37560 * 18 17 16 21 21 N 1.30824 * 119.99961 * 17.87185 * 20 18 17 22 22 Si 1.86794 * 119.99801 * 197.87686 * 20 18 17 23 23 H 1.48499 * 109.47603 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47129 * 119.99718 * 22 20 18 25 25 H 1.48498 * 109.46961 * 239.99608 * 22 20 18 26 26 C 1.40717 * 119.50860 * 359.77315 * 17 16 15 27 27 C 1.37618 * 119.74820 * 359.97438 * 26 17 16 28 28 O 1.42898 * 109.41304 * 302.38796 * 7 6 5 29 29 H 1.09002 * 109.47466 * 299.97657 * 1 2 3 30 30 H 1.09004 * 109.47395 * 59.97585 * 1 2 3 31 31 H 1.09002 * 109.47254 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.52104 * 57.68078 * 4 2 1 33 33 H 1.09000 * 109.57217 * 297.52990 * 4 2 1 34 34 H 1.08996 * 109.54571 * 183.15600 * 5 4 2 35 35 H 1.09001 * 109.54469 * 62.88092 * 5 4 2 36 36 H 1.08999 * 109.52088 * 297.07181 * 6 5 4 37 37 H 1.09000 * 109.52050 * 176.88797 * 6 5 4 38 38 H 1.09003 * 109.47248 * 64.99979 * 9 7 6 39 39 H 1.09000 * 109.47238 * 305.00063 * 9 7 6 40 40 H 0.97003 * 119.99258 * 345.00827 * 10 9 7 41 41 H 1.08005 * 119.87637 * 359.97438 * 15 14 11 42 42 H 1.07998 * 120.13414 * 180.26990 * 16 15 14 43 43 H 0.96993 * 120.00157 * 180.02562 * 21 20 18 44 44 H 1.08004 * 120.12562 * 180.02562 * 26 17 16 45 45 H 1.07991 * 119.87779 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7707 1.2122 6 6 4.0176 -1.4601 -0.0809 7 6 3.4306 -0.7094 -1.2791 8 1 3.8193 0.3088 -1.2959 9 6 3.8226 -1.4267 -2.5723 10 7 3.3632 -0.6449 -3.7230 11 16 3.9562 -0.9697 -5.2347 12 8 3.2990 -0.0770 -6.1238 13 8 5.3697 -1.0374 -5.1052 14 6 3.4181 -2.5903 -5.6689 15 6 4.2077 -3.6851 -5.3530 16 6 3.7952 -4.9558 -5.6829 17 6 2.5714 -5.1407 -6.3525 18 6 2.1394 -6.4413 -6.7006 19 1 1.4496 -6.5799 -7.5200 20 6 2.6056 -7.5488 -5.9833 21 7 3.1437 -7.3839 -4.8024 22 14 2.4595 -9.2624 -6.7122 23 1 1.8185 -9.1788 -8.0491 24 1 3.8123 -9.8597 -6.8479 25 1 1.6310 -10.1113 -5.8188 26 6 1.7807 -4.0217 -6.6729 27 6 2.2107 -2.7605 -6.3286 28 8 2.0065 -0.6743 -1.1663 29 1 -0.3634 0.5135 0.8902 30 1 -0.3634 0.5142 -0.8898 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6443 -1.7373 1.2710 33 1 1.7148 -0.1851 2.1404 34 1 3.9392 -1.3325 2.0707 35 1 3.9689 0.2437 1.2408 36 1 3.6613 -2.4902 -0.0862 37 1 5.1058 -1.4498 -0.1421 38 1 3.3596 -2.4133 -2.5953 39 1 4.9066 -1.5330 -2.6147 40 1 2.7118 0.0631 -3.5993 41 1 5.1487 -3.5404 -4.8429 42 1 4.4098 -5.8076 -5.4320 43 1 3.4672 -8.1515 -4.3053 44 1 0.8395 -4.1521 -7.1864 45 1 1.6053 -1.9003 -6.5730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645932743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:24 Heat of formation + Delta-G solvation = -149.153826 kcal Electronic energy + Delta-G solvation = -27604.996733 eV Core-core repulsion = 23712.079272 eV Total energy + Delta-G solvation = -3892.917461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.56950 -39.37539 -38.14618 -36.78904 -36.44312 -35.79794 -34.53946 -33.33537 -32.06327 -31.28744 -29.43186 -27.61750 -26.61696 -23.67353 -23.31661 -22.96057 -22.79053 -21.26278 -20.27774 -19.42265 -18.61419 -18.24689 -17.55344 -17.25454 -17.17573 -16.65041 -15.96943 -15.83772 -15.57357 -15.18645 -15.07648 -14.96126 -14.41583 -14.26999 -14.09467 -13.94878 -13.70204 -13.59068 -13.53375 -13.13218 -13.06497 -12.99939 -12.98767 -12.90461 -12.86599 -12.60799 -12.55595 -12.01129 -11.97378 -11.89901 -11.60260 -11.55153 -11.34879 -11.22826 -11.21029 -10.38389 -10.28569 -9.78343 -9.54454 -8.87151 -6.64633 -0.28950 0.48840 1.06221 1.35953 1.41947 1.52822 2.11967 2.23904 2.52043 2.71138 2.94434 3.52599 3.56391 3.75060 3.87384 3.95023 3.98337 4.14988 4.21458 4.30970 4.32324 4.39958 4.46938 4.52736 4.68852 4.73237 4.82772 4.86471 4.89994 4.94759 5.02127 5.02998 5.10288 5.12410 5.19499 5.20068 5.24799 5.33032 5.44439 5.52815 5.59927 5.76459 5.93334 6.15070 6.18231 6.39134 6.49233 6.68642 6.81416 8.08279 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.003402 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.970570 B = 8228.995772 C = 9554.231860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.077 3.923 3 H 0.068 0.932 4 C -0.149 4.149 5 C -0.118 4.118 6 C -0.153 4.153 7 C 0.091 3.909 8 H 0.079 0.921 9 C 0.122 3.878 10 N -1.107 6.107 11 S 2.728 3.272 12 O -1.003 7.003 13 O -1.000 7.000 14 C -0.797 4.797 15 C -0.020 4.020 16 C -0.207 4.207 17 C 0.111 3.889 18 C -0.467 4.467 19 H 0.090 0.910 20 C 0.036 3.964 21 N -0.795 5.795 22 Si 0.991 3.009 23 H -0.255 1.255 24 H -0.261 1.261 25 H -0.261 1.261 26 C -0.259 4.259 27 C -0.003 4.003 28 O -0.395 6.395 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.423 0.577 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.299 0.701 44 H 0.109 0.891 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 8.889 13.927 16.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.020 3.980 3 H 0.086 0.914 4 C -0.187 4.187 5 C -0.155 4.155 6 C -0.192 4.192 7 C 0.032 3.968 8 H 0.097 0.903 9 C -0.004 4.004 10 N -0.867 5.867 11 S 2.823 3.177 12 O -0.993 6.993 13 O -0.990 6.990 14 C -0.890 4.890 15 C -0.040 4.040 16 C -0.227 4.227 17 C 0.108 3.892 18 C -0.494 4.494 19 H 0.108 0.892 20 C -0.184 4.184 21 N -0.417 5.417 22 Si 0.810 3.190 23 H -0.179 1.179 24 H -0.185 1.185 25 H -0.185 1.185 26 C -0.279 4.279 27 C -0.022 4.022 28 O -0.316 6.316 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.259 0.741 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.110 0.890 44 H 0.127 0.873 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.243 9.139 13.497 16.302 hybrid contribution -0.633 -1.227 -0.069 1.383 sum -0.876 7.912 13.428 15.610 Atomic orbital electron populations 1.21794 0.92743 1.02514 1.03129 1.22308 0.95481 0.95368 0.84854 0.91434 1.22227 0.96398 1.01522 0.98517 1.21591 0.95330 1.01554 0.97067 1.22212 1.02161 1.00164 0.94637 1.22254 0.81790 0.99431 0.93349 0.90284 1.21431 1.00131 0.94684 0.84142 1.55212 1.60435 1.48089 1.22992 1.00221 0.72538 0.72999 0.71928 1.93460 1.76915 1.64874 1.64081 1.93454 1.31039 1.87892 1.86615 1.29652 1.10188 1.20386 1.28738 1.20470 0.96485 0.92191 0.94819 1.21355 0.97866 0.95953 1.07506 1.18204 0.90307 0.93538 0.87166 1.20246 1.23636 0.91296 1.14212 0.89221 1.26986 0.91511 1.06171 0.93713 1.69845 1.26227 1.35884 1.09790 0.85015 0.79572 0.74747 0.79644 1.17874 1.18518 1.18517 1.21270 1.01330 0.92990 1.12319 1.20446 0.92844 0.96934 0.92010 1.87973 1.20844 1.78550 1.44213 0.88937 0.92410 0.92987 0.92227 0.89025 0.90200 0.90611 0.91781 0.89098 0.92252 0.88380 0.74120 0.86396 0.86973 0.89017 0.87258 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.56 71.98 0.69 -1.74 16 2 C 0.08 1.41 3.26 30.62 0.10 1.51 16 3 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.15 -2.29 5.42 30.68 0.17 -2.12 16 5 C -0.12 -1.70 6.03 30.72 0.19 -1.52 16 6 C -0.15 -2.87 5.42 30.69 0.17 -2.70 16 7 C 0.09 2.04 2.73 30.62 0.08 2.12 16 8 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 9 C 0.12 3.43 5.89 86.38 0.51 3.94 16 10 N -1.11 -33.64 5.96 -187.49 -1.12 -34.76 16 11 S 2.73 104.35 5.73 -56.49 -0.32 104.02 16 12 O -1.00 -42.02 17.26 -128.00 -2.21 -44.23 16 13 O -1.00 -41.55 16.72 -128.00 -2.14 -43.69 16 14 C -0.80 -35.71 5.97 22.46 0.13 -35.58 16 15 C -0.02 -0.93 9.49 22.22 0.21 -0.72 16 16 C -0.21 -10.71 8.70 22.73 0.20 -10.52 16 17 C 0.11 5.89 5.58 -21.29 -0.12 5.77 16 18 C -0.47 -23.74 9.05 23.46 0.21 -23.53 16 19 H 0.09 4.34 7.91 -2.91 -0.02 4.31 16 20 C 0.04 1.66 5.14 85.26 0.44 2.10 16 21 N -0.79 -38.33 10.95 21.83 0.24 -38.09 16 22 Si 0.99 34.84 29.59 68.60 2.03 36.87 16 23 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 24 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 25 H -0.26 -8.70 7.11 99.48 0.71 -8.00 16 26 C -0.26 -12.78 9.80 22.73 0.22 -12.56 16 27 C 0.00 -0.12 9.49 22.22 0.21 0.09 16 28 O -0.40 -9.91 9.85 -148.98 -1.47 -11.37 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.10 2.57 7.75 -2.39 -0.02 2.55 16 40 H 0.42 11.28 8.51 -96.74 -0.82 10.46 16 41 H 0.12 5.06 7.59 -2.91 -0.02 5.03 16 42 H 0.11 5.91 6.15 -2.91 -0.02 5.89 16 43 H 0.30 12.71 8.30 -92.71 -0.77 11.94 16 44 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 45 H 0.12 5.07 7.60 -2.92 -0.02 5.05 16 Total: -1.00 -65.16 378.50 -1.42 -66.58 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: 0.17 Total: 40.12 kcal Atomic # 6 Polarization: -78.86 SS G_CDS: 3.41 Total: -75.45 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -0.88 Total: -72.85 kcal Atomic # 8 Polarization: -93.47 SS G_CDS: -5.82 Total: -99.29 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Atomic # 16 Polarization: 104.35 SS G_CDS: -0.32 Total: 104.02 kcal Total: -65.16 -1.42 -66.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645932743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.577 kcal (2) G-P(sol) polarization free energy of solvation -65.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds