Wall clock time and date at job start Tue Mar 31 2020 23:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.48967 * 2 1 4 4 C 1.53094 * 109.48582 * 239.96942 * 2 1 3 5 5 C 1.53169 * 109.16281 * 182.40717 * 4 2 1 6 6 C 1.53180 * 109.03634 * 56.98209 * 5 4 2 7 7 C 1.53085 * 109.16185 * 303.01307 * 6 5 4 8 8 H 1.08999 * 109.49361 * 297.62269 * 7 6 5 9 9 C 1.53007 * 109.48074 * 177.59315 * 7 6 5 10 10 N 1.46501 * 109.47010 * 180.02562 * 9 7 6 11 11 S 1.65596 * 119.99975 * 165.00124 * 10 9 7 12 12 O 1.42099 * 106.40104 * 311.45954 * 11 10 9 13 13 O 1.42095 * 106.40625 * 178.53777 * 11 10 9 14 14 C 1.76202 * 107.21807 * 64.99760 * 11 10 9 15 15 C 1.38635 * 119.75247 * 90.00302 * 14 11 10 16 16 C 1.37611 * 120.25212 * 180.02562 * 15 14 11 17 17 C 1.40717 * 119.74429 * 359.97438 * 16 15 14 18 18 C 1.41393 * 120.24544 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00167 * 334.84990 * 18 17 16 20 20 C 1.39947 * 120.00447 * 154.85088 * 18 17 16 21 21 N 1.30829 * 119.99580 * 334.27844 * 20 18 17 22 22 Si 1.86794 * 120.00413 * 154.27772 * 20 18 17 23 23 H 1.48504 * 109.47556 * 180.02562 * 22 20 18 24 24 H 1.48495 * 109.47307 * 60.00117 * 22 20 18 25 25 H 1.48499 * 109.47060 * 300.00218 * 22 20 18 26 26 C 1.40717 * 119.51251 * 0.27207 * 17 16 15 27 27 C 1.37622 * 119.74258 * 359.45159 * 26 17 16 28 28 O 1.42903 * 109.41528 * 57.61346 * 7 6 5 29 29 H 1.08996 * 109.47166 * 299.97838 * 1 2 3 30 30 H 1.09002 * 109.46892 * 59.97568 * 1 2 3 31 31 H 1.09002 * 109.46653 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.51733 * 302.31396 * 4 2 1 33 33 H 1.08997 * 109.51903 * 62.43485 * 4 2 1 34 34 H 1.09001 * 109.54112 * 176.84377 * 5 4 2 35 35 H 1.08992 * 109.54765 * 297.02344 * 5 4 2 36 36 H 1.09002 * 109.52044 * 183.10782 * 6 5 4 37 37 H 1.08999 * 109.52418 * 62.92204 * 6 5 4 38 38 H 1.08995 * 109.47174 * 60.06013 * 9 7 6 39 39 H 1.08996 * 109.46707 * 300.06086 * 9 7 6 40 40 H 0.97002 * 120.00394 * 344.99269 * 10 9 7 41 41 H 1.07996 * 119.87152 * 359.97438 * 15 14 11 42 42 H 1.08001 * 120.13153 * 180.02562 * 16 15 14 43 43 H 0.96996 * 120.00212 * 354.29995 * 21 20 18 44 44 H 1.07998 * 120.12873 * 179.72603 * 26 17 16 45 45 H 1.07997 * 119.87625 * 180.27232 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7223 -1.2495 5 6 3.5712 -0.7708 -1.2120 6 6 4.0177 -1.4600 0.0811 7 6 3.4308 -0.7091 1.2792 8 1 3.8192 0.3091 1.2961 9 6 3.8227 -1.4263 2.5726 10 7 3.2604 -0.7080 3.7189 11 16 3.1994 -1.4374 5.2043 12 8 2.6400 -2.7268 4.9954 13 8 2.6412 -0.4834 6.0973 14 6 4.8621 -1.6953 5.7275 15 6 5.5119 -0.7156 6.4623 16 6 6.8106 -0.9060 6.8757 17 6 7.4788 -2.1008 6.5502 18 6 8.8130 -2.3078 6.9700 19 1 9.4546 -1.4616 7.1669 20 6 9.3024 -3.6090 7.1303 21 7 8.4777 -4.5903 7.3921 22 14 11.1329 -3.9449 6.9707 23 1 11.3911 -5.3920 7.1821 24 1 11.8716 -3.1559 7.9890 25 1 11.5914 -3.5539 5.6134 26 6 6.8112 -3.0860 5.7994 27 6 5.5105 -2.8765 5.4015 28 8 2.0066 -0.6741 1.1665 29 1 -0.3633 0.5135 0.8901 30 1 -0.3633 0.5142 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6445 -1.7375 -1.2708 33 1 1.7140 -0.1850 -2.1398 34 1 3.9393 -1.3327 -2.0704 35 1 3.9690 0.2435 -1.2423 36 1 5.1059 -1.4497 0.1423 37 1 3.6614 -2.4901 0.0866 38 1 4.9090 -1.4530 2.6585 39 1 3.4345 -2.4447 2.5553 40 1 2.9240 0.1950 3.6079 41 1 4.9972 0.2007 6.7106 42 1 7.3148 -0.1417 7.4485 43 1 7.5400 -4.4049 7.5568 44 1 7.3160 -4.0049 5.5402 45 1 4.9946 -3.6331 4.8289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645932748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:32 Heat of formation + Delta-G solvation = -155.285175 kcal Electronic energy + Delta-G solvation = -27457.220850 eV Core-core repulsion = 23564.037514 eV Total energy + Delta-G solvation = -3893.183336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.58540 -39.64673 -38.19820 -36.83412 -36.48104 -36.03646 -34.55027 -33.35385 -31.96268 -31.32639 -29.45806 -27.47605 -26.63421 -23.69275 -23.36126 -23.18966 -22.80889 -21.31972 -20.34213 -20.01813 -18.72009 -18.26512 -17.66497 -17.18549 -16.61571 -16.56173 -16.28559 -15.80039 -15.59380 -15.44338 -15.14340 -15.00655 -14.64531 -14.35093 -14.09802 -14.05763 -13.72080 -13.59886 -13.55621 -13.24781 -13.13005 -13.07637 -13.04337 -12.99914 -12.81976 -12.62055 -12.06611 -12.00049 -11.92721 -11.88658 -11.75521 -11.60606 -11.37832 -11.19105 -11.07329 -10.44347 -10.29466 -9.99181 -9.80041 -9.39596 -6.78908 -0.35899 0.38625 0.86984 1.49337 1.55226 1.79093 2.19541 2.25604 2.48596 2.67159 2.90904 3.33611 3.50524 3.73001 3.85281 3.92374 3.96839 4.14376 4.16785 4.19068 4.20182 4.36193 4.47889 4.55385 4.60927 4.66842 4.69915 4.80493 4.84699 4.89233 5.00777 5.01995 5.02331 5.09879 5.17860 5.18371 5.23022 5.31641 5.42396 5.42709 5.55369 5.56915 5.64231 5.99360 6.14347 6.17842 6.37631 6.55801 6.67936 7.78354 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.002914 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.772611 B = 9607.517734 C =10773.603725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 H 0.065 0.935 4 C -0.148 4.148 5 C -0.119 4.119 6 C -0.153 4.153 7 C 0.090 3.910 8 H 0.078 0.922 9 C 0.121 3.879 10 N -1.104 6.104 11 S 2.728 3.272 12 O -1.005 7.005 13 O -1.003 7.003 14 C -0.802 4.802 15 C 0.006 3.994 16 C -0.256 4.256 17 C 0.094 3.906 18 C -0.513 4.513 19 H 0.090 0.910 20 C 0.003 3.997 21 N -0.789 5.789 22 Si 1.120 2.880 23 H -0.271 1.271 24 H -0.253 1.253 25 H -0.258 1.258 26 C -0.253 4.253 27 C 0.002 3.998 28 O -0.395 6.395 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.423 0.577 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.289 0.711 44 H 0.099 0.901 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.824 7.886 -17.380 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.018 3.982 3 H 0.083 0.917 4 C -0.186 4.186 5 C -0.156 4.156 6 C -0.191 4.191 7 C 0.031 3.969 8 H 0.096 0.904 9 C -0.005 4.005 10 N -0.865 5.865 11 S 2.823 3.177 12 O -0.995 6.995 13 O -0.994 6.994 14 C -0.895 4.895 15 C -0.014 4.014 16 C -0.276 4.276 17 C 0.091 3.909 18 C -0.539 4.539 19 H 0.108 0.892 20 C -0.217 4.217 21 N -0.409 5.409 22 Si 0.935 3.065 23 H -0.195 1.195 24 H -0.177 1.177 25 H -0.182 1.182 26 C -0.273 4.273 27 C -0.018 4.018 28 O -0.315 6.315 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.259 0.741 41 H 0.145 0.855 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.117 0.883 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.624 6.139 -16.744 18.700 hybrid contribution -0.594 1.468 0.165 1.592 sum -6.218 7.607 -16.579 19.272 Atomic orbital electron populations 1.21798 0.92660 1.02667 1.03082 1.22326 0.95558 0.95359 0.84934 0.91667 1.22220 0.96257 1.01657 0.98418 1.21587 0.95431 1.01489 0.97133 1.22201 1.02059 1.00297 0.94542 1.22270 0.81785 0.99445 0.93386 0.90431 1.21478 0.98730 0.96186 0.84083 1.55108 1.78405 1.28939 1.24020 1.00198 0.73478 0.72019 0.72021 1.93459 1.77596 1.42442 1.86015 1.93457 1.78437 1.63332 1.64164 1.29638 1.25987 1.05671 1.28211 1.20476 0.93779 0.95914 0.91221 1.21204 0.95890 1.00655 1.09857 1.18207 0.92807 0.92119 0.87807 1.21200 0.96996 0.96979 1.38676 0.89174 1.28758 1.12092 0.91214 0.89653 1.70571 1.08355 1.36357 1.25652 0.82971 0.66425 0.77652 0.79423 1.19535 1.17717 1.18224 1.21200 0.96548 1.01864 1.07670 1.20424 0.93576 0.93780 0.94001 1.87983 1.20812 1.78528 1.44162 0.92554 0.88947 0.92666 0.91867 0.89103 0.90173 0.90890 0.89368 0.91353 0.89379 0.90872 0.74081 0.85510 0.87094 0.89817 0.88256 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.57 71.98 0.69 -1.50 16 2 C 0.08 1.27 3.26 30.63 0.10 1.37 16 3 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.15 -2.02 5.42 30.68 0.17 -1.85 16 5 C -0.12 -1.57 6.03 30.71 0.19 -1.39 16 6 C -0.15 -2.60 5.42 30.68 0.17 -2.44 16 7 C 0.09 1.88 2.73 30.62 0.08 1.96 16 8 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 9 C 0.12 3.17 5.92 86.38 0.51 3.68 16 10 N -1.10 -32.11 5.86 -187.49 -1.10 -33.20 16 11 S 2.73 103.76 5.73 -56.49 -0.32 103.44 16 12 O -1.01 -43.44 16.73 -128.00 -2.14 -45.58 16 13 O -1.00 -41.96 17.26 -128.00 -2.21 -44.17 16 14 C -0.80 -34.46 5.97 22.46 0.13 -34.32 16 15 C 0.01 0.26 9.49 22.22 0.21 0.47 16 16 C -0.26 -12.08 9.80 22.73 0.22 -11.86 16 17 C 0.09 4.80 5.30 -21.29 -0.11 4.68 16 18 C -0.51 -25.40 8.98 23.46 0.21 -25.19 16 19 H 0.09 4.23 7.96 -2.91 -0.02 4.21 16 20 C 0.00 0.12 4.93 85.26 0.42 0.54 16 21 N -0.79 -40.08 12.32 21.83 0.27 -39.81 16 22 Si 1.12 38.73 30.00 68.60 2.06 40.78 16 23 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 24 H -0.25 -7.95 7.11 99.48 0.71 -7.24 16 25 H -0.26 -8.33 7.11 99.48 0.71 -7.63 16 26 C -0.25 -12.57 7.96 22.73 0.18 -12.39 16 27 C 0.00 0.10 9.49 22.22 0.21 0.31 16 28 O -0.39 -9.27 9.91 -148.98 -1.48 -10.74 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.07 2.08 7.75 -2.39 -0.02 2.06 16 40 H 0.42 10.45 8.65 -96.75 -0.84 9.61 16 41 H 0.13 4.92 7.60 -2.91 -0.02 4.90 16 42 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 43 H 0.29 15.49 6.70 -92.71 -0.62 14.87 16 44 H 0.10 5.06 6.50 -2.91 -0.02 5.04 16 45 H 0.12 4.98 7.60 -2.91 -0.02 4.96 16 Total: -1.00 -65.66 377.93 -1.24 -66.90 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: 0.30 Total: 40.30 kcal Atomic # 6 Polarization: -81.30 SS G_CDS: 3.38 Total: -77.92 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -0.83 Total: -73.02 kcal Atomic # 8 Polarization: -94.66 SS G_CDS: -5.83 Total: -100.49 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.06 Total: 40.78 kcal Atomic # 16 Polarization: 103.76 SS G_CDS: -0.32 Total: 103.44 kcal Total: -65.66 -1.24 -66.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645932748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.381 kcal (2) G-P(sol) polarization free energy of solvation -65.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds