Wall clock time and date at job start Tue Mar 31 2020 23:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.70161 * 2 1 4 4 C 1.53193 * 109.58953 * 120.35661 * 2 1 3 5 5 H 1.08994 * 109.50121 * 185.10306 * 4 2 1 6 6 C 1.52992 * 109.49869 * 305.20745 * 4 2 1 7 7 O 1.42902 * 109.47405 * 185.00111 * 6 4 2 8 8 C 1.53046 * 109.30851 * 65.15535 * 4 2 1 9 9 C 1.53040 * 109.54148 * 61.36454 * 8 4 2 10 10 C 1.53188 * 109.31261 * 298.63473 * 9 8 4 11 11 N 1.46930 * 108.77670 * 54.63472 * 10 9 8 12 12 S 1.65602 * 120.63435 * 126.66289 * 11 10 9 13 13 O 1.42099 * 106.39820 * 23.26317 * 12 11 10 14 14 O 1.42097 * 106.40433 * 156.17834 * 12 11 10 15 15 C 1.76198 * 107.21917 * 269.72413 * 12 11 10 16 16 C 1.38638 * 119.74512 * 269.72113 * 15 12 11 17 17 C 1.37621 * 120.24235 * 179.76198 * 16 15 12 18 18 C 1.40717 * 119.74938 * 0.48973 * 17 16 15 19 19 C 1.41388 * 120.24329 * 179.78546 * 18 17 16 20 20 H 1.08007 * 120.00108 * 204.36954 * 19 18 17 21 21 C 1.39944 * 120.00301 * 24.37417 * 19 18 17 22 22 N 1.30820 * 119.99866 * 17.87402 * 21 19 18 23 23 Si 1.86806 * 120.00150 * 197.87763 * 21 19 18 24 24 H 1.48496 * 109.46873 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46964 * 119.99937 * 23 21 19 26 26 H 1.48501 * 109.47127 * 239.99757 * 23 21 19 27 27 C 1.40714 * 119.51000 * 359.76756 * 18 17 16 28 28 C 1.37624 * 119.74294 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.46971 * 180.34944 * 1 2 3 30 30 H 1.08995 * 109.47178 * 300.34657 * 1 2 3 31 31 H 1.09002 * 109.47114 * 60.35707 * 1 2 3 32 32 H 1.09001 * 109.47126 * 304.99154 * 6 4 2 33 33 H 1.09000 * 109.47756 * 64.99673 * 6 4 2 34 34 H 0.96696 * 114.00050 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.45929 * 181.38839 * 8 4 2 36 36 H 1.08998 * 109.46206 * 301.35618 * 8 4 2 37 37 H 1.09006 * 109.49499 * 58.58858 * 9 8 4 38 38 H 1.09001 * 109.49867 * 178.68181 * 9 8 4 39 39 H 1.08989 * 109.59052 * 294.84488 * 10 9 8 40 40 H 1.09001 * 109.58461 * 174.41785 * 10 9 8 41 41 H 1.07993 * 119.87925 * 0.02562 * 16 15 12 42 42 H 1.08006 * 120.12448 * 180.27644 * 17 16 15 43 43 H 0.97005 * 119.99629 * 180.02562 * 22 21 19 44 44 H 1.07994 * 120.12828 * 180.02562 * 27 18 17 45 45 H 1.07998 * 119.87361 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 1 3.1297 -0.6504 1.2913 6 6 1.4315 -0.0966 2.4966 7 8 1.9988 -0.6994 3.6615 8 6 1.6415 -2.2042 1.1700 9 6 2.2801 -2.8464 -0.0637 10 6 1.7692 -2.1410 -1.3239 11 7 2.0226 -0.6995 -1.1946 12 16 2.8417 0.1226 -2.3759 13 8 2.6908 -0.6338 -3.5693 14 8 2.4491 1.4837 -2.2636 15 6 4.5533 0.0627 -1.9619 16 6 5.1064 1.0621 -1.1762 17 6 6.4410 1.0228 -0.8426 18 6 7.2470 -0.0314 -1.3107 19 6 8.6204 -0.0796 -0.9781 20 1 9.3111 -0.6154 -1.6124 21 6 9.0847 0.5667 0.1730 22 7 8.2440 0.9094 1.1149 23 14 10.9050 0.9403 0.3645 24 1 11.6386 0.4537 -0.8314 25 1 11.0977 2.4063 0.5015 26 1 11.4257 0.2573 1.5759 27 6 6.6760 -1.0374 -2.1120 28 6 5.3379 -0.9806 -2.4287 29 1 -0.3633 -1.0277 0.0063 30 1 -0.3633 0.5192 0.8868 31 1 -0.3633 0.5083 -0.8932 32 1 1.6411 0.9730 2.5025 33 1 0.3531 -0.2556 2.4938 34 1 1.6563 -0.3457 4.4938 35 1 1.9844 -2.7203 2.0666 36 1 0.5566 -2.2816 1.0989 37 1 3.3641 -2.7474 -0.0054 38 1 2.0124 -3.9022 -0.1040 39 1 0.6988 -2.3155 -1.4319 40 1 2.2945 -2.5273 -2.1973 41 1 4.4867 1.8721 -0.8211 42 1 6.8689 1.8000 -0.2267 43 1 8.5659 1.3577 1.9126 44 1 7.2852 -1.8512 -2.4763 45 1 4.8973 -1.7518 -3.0431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647226069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:53 Heat of formation + Delta-G solvation = -122.601382 kcal Electronic energy + Delta-G solvation = -28806.697760 eV Core-core repulsion = 24914.931700 eV Total energy + Delta-G solvation = -3891.766061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.33966 -37.55537 -36.59182 -36.47434 -35.13001 -34.02786 -32.53219 -32.27816 -30.24411 -29.45357 -27.90162 -25.81500 -25.72707 -23.21621 -21.99966 -21.43838 -21.12971 -19.31774 -18.10324 -17.62343 -17.46304 -17.27778 -16.53602 -15.57398 -15.31401 -15.21910 -14.58508 -14.30341 -14.29016 -14.10184 -13.49116 -13.35026 -13.25353 -13.10403 -12.90448 -12.41145 -12.38667 -12.18544 -12.09176 -11.77934 -11.63703 -11.44695 -11.42112 -11.30402 -11.18891 -11.18394 -10.98725 -10.90770 -10.66359 -10.38233 -10.31117 -10.23623 -9.84771 -9.73713 -9.54979 -9.49521 -8.62954 -7.93436 -7.68857 -7.13368 -4.78604 1.20661 2.26577 2.88172 2.90588 2.94084 2.96040 3.57483 3.67340 4.19303 4.26635 4.54415 4.69936 4.85248 5.03809 5.09135 5.19452 5.25100 5.32870 5.34025 5.42473 5.43283 5.51864 5.65349 5.71590 5.81619 5.86235 5.98831 6.05003 6.06600 6.11255 6.12775 6.30832 6.37516 6.52909 6.59207 6.68252 6.70180 6.85173 7.02761 7.07072 7.35209 7.43875 7.61761 7.64699 7.78373 7.98085 8.33238 8.52693 8.66432 9.77980 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.004252 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.826384 B = 6583.539042 C = 7798.366157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.159 3.841 3 H 0.097 0.903 4 C -0.099 4.099 5 H 0.090 0.910 6 C 0.081 3.919 7 O -0.570 6.570 8 C -0.104 4.104 9 C -0.137 4.137 10 C 0.125 3.875 11 N -0.997 5.997 12 S 2.690 3.310 13 O -0.983 6.983 14 O -0.982 6.982 15 C -0.785 4.785 16 C -0.015 4.015 17 C -0.182 4.182 18 C 0.140 3.860 19 C -0.435 4.435 20 H 0.088 0.912 21 C 0.072 3.928 22 N -0.765 5.765 23 Si 0.916 3.084 24 H -0.256 1.256 25 H -0.268 1.268 26 H -0.270 1.270 27 C -0.238 4.238 28 C 0.002 3.998 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.375 0.625 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.122 0.878 43 H 0.288 0.712 44 H 0.099 0.901 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 -2.982 4.863 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.052 3.948 3 H 0.115 0.885 4 C -0.119 4.119 5 H 0.109 0.891 6 C 0.003 3.997 7 O -0.374 6.374 8 C -0.141 4.141 9 C -0.176 4.176 10 C -0.001 4.001 11 N -0.832 5.832 12 S 2.791 3.209 13 O -0.974 6.974 14 O -0.973 6.973 15 C -0.881 4.881 16 C -0.035 4.035 17 C -0.202 4.202 18 C 0.136 3.864 19 C -0.463 4.463 20 H 0.106 0.894 21 C -0.150 4.150 22 N -0.387 5.387 23 Si 0.739 3.261 24 H -0.180 1.180 25 H -0.192 1.192 26 H -0.195 1.195 27 C -0.259 4.259 28 C -0.018 4.018 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.221 0.779 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.140 0.860 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.354 -2.823 3.887 12.329 hybrid contribution 1.141 0.311 1.132 1.637 sum -10.213 -2.512 5.018 11.653 Atomic orbital electron populations 1.22236 0.95417 1.02452 1.02222 1.20719 0.94110 0.95950 0.83972 0.88482 1.21500 1.02418 0.95927 0.92039 0.89124 1.22260 0.96039 0.95977 0.85438 1.86518 1.69095 1.65861 1.15966 1.21436 0.99888 0.94697 0.98114 1.21934 1.01962 0.98919 0.94742 1.21307 1.00711 0.79469 0.98585 1.58033 1.71638 1.17701 1.35802 1.01390 0.74482 0.72449 0.72616 1.93468 1.87409 1.72590 1.43951 1.93468 1.83440 1.33824 1.86574 1.29214 1.21409 1.10611 1.26915 1.20218 0.95799 0.94385 0.93147 1.21323 0.93192 1.00242 1.05458 1.17844 0.92803 0.88673 0.87088 1.19969 0.93725 1.26500 1.06065 0.89437 1.26129 1.01218 0.92826 0.94800 1.69829 1.37475 1.26212 1.05179 0.86122 0.81049 0.79317 0.79622 1.17978 1.19232 1.19531 1.21037 0.94538 1.01008 1.09297 1.20135 0.94210 0.93858 0.93613 0.91818 0.91662 0.92085 0.93478 0.93443 0.77861 0.91326 0.92202 0.90764 0.91239 0.91773 0.89374 0.88121 0.86031 0.90059 0.88256 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 8.51 37.16 0.32 -1.53 16 2 C 0.16 2.23 2.74 -67.60 -0.19 2.05 16 3 H 0.10 1.46 7.13 -51.93 -0.37 1.09 16 4 C -0.10 -1.34 2.36 -90.50 -0.21 -1.55 16 5 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 6 C 0.08 0.91 5.76 37.15 0.21 1.12 16 7 O -0.57 -6.77 13.18 -35.23 -0.46 -7.23 16 8 C -0.10 -1.27 4.87 -26.69 -0.13 -1.40 16 9 C -0.14 -1.74 6.08 -26.61 -0.16 -1.90 16 10 C 0.12 1.70 5.96 -3.71 -0.02 1.68 16 11 N -1.00 -15.78 3.00 -106.47 -0.32 -16.10 16 12 S 2.69 53.06 5.69 -107.50 -0.61 52.45 16 13 O -0.98 -20.94 15.97 -57.17 -0.91 -21.85 16 14 O -0.98 -21.07 15.97 -57.17 -0.91 -21.98 16 15 C -0.79 -17.47 6.00 -39.29 -0.24 -17.71 16 16 C -0.02 -0.35 9.49 -39.66 -0.38 -0.73 16 17 C -0.18 -4.57 8.70 -38.87 -0.34 -4.91 16 18 C 0.14 3.56 5.58 -106.83 -0.60 2.96 16 19 C -0.44 -10.74 9.05 -37.75 -0.34 -11.08 16 20 H 0.09 2.05 7.91 -52.48 -0.42 1.64 16 21 C 0.07 1.67 5.14 -17.34 -0.09 1.59 16 22 N -0.76 -18.25 10.95 55.55 0.61 -17.64 16 23 Si 0.92 17.12 29.60 -169.99 -5.03 12.09 16 24 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 25 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 26 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 27 C -0.24 -5.67 9.80 -38.87 -0.38 -6.05 16 28 C 0.00 0.04 9.49 -39.66 -0.38 -0.33 16 29 H 0.06 0.65 5.72 -51.93 -0.30 0.35 16 30 H 0.06 0.59 6.52 -51.93 -0.34 0.26 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.43 6.68 -51.93 -0.35 0.09 16 34 H 0.38 2.63 9.12 45.56 0.42 3.04 16 35 H 0.07 0.88 7.79 -51.93 -0.40 0.48 16 36 H 0.06 0.64 6.49 -51.93 -0.34 0.30 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.74 7.50 -51.94 -0.39 0.35 16 40 H 0.09 1.24 7.12 -51.93 -0.37 0.88 16 41 H 0.10 2.18 7.59 -52.49 -0.40 1.78 16 42 H 0.12 3.10 6.16 -52.48 -0.32 2.77 16 43 H 0.29 6.15 8.30 -40.82 -0.34 5.82 16 44 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 45 H 0.10 2.07 7.60 -52.49 -0.40 1.67 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -30.59 365.60 -10.69 -41.29 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.64 Total: 11.28 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: -2.92 Total: -37.81 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.29 Total: -33.74 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -2.29 Total: -51.06 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 53.06 SS G_CDS: -0.61 Total: 52.45 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.59 -10.69 -41.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647226069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.314 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds