Wall clock time and date at job start Tue Mar 31 2020 23:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.70161 * 2 1 4 4 C 1.53193 * 109.58953 * 120.35661 * 2 1 3 5 5 H 1.08994 * 109.50121 * 185.10306 * 4 2 1 6 6 C 1.52992 * 109.49869 * 305.20745 * 4 2 1 7 7 O 1.42902 * 109.47405 * 185.00111 * 6 4 2 8 8 C 1.53046 * 109.30851 * 65.15535 * 4 2 1 9 9 C 1.53040 * 109.54148 * 61.36454 * 8 4 2 10 10 C 1.53188 * 109.31261 * 298.63473 * 9 8 4 11 11 N 1.46930 * 108.77670 * 54.63472 * 10 9 8 12 12 S 1.65602 * 120.63435 * 126.66289 * 11 10 9 13 13 O 1.42099 * 106.39820 * 23.26317 * 12 11 10 14 14 O 1.42097 * 106.40433 * 156.17834 * 12 11 10 15 15 C 1.76198 * 107.21917 * 269.72413 * 12 11 10 16 16 C 1.38638 * 119.74512 * 269.72113 * 15 12 11 17 17 C 1.37621 * 120.24235 * 179.76198 * 16 15 12 18 18 C 1.40717 * 119.74938 * 0.48973 * 17 16 15 19 19 C 1.41388 * 120.24329 * 179.78546 * 18 17 16 20 20 H 1.08007 * 120.00108 * 204.36954 * 19 18 17 21 21 C 1.39944 * 120.00301 * 24.37417 * 19 18 17 22 22 N 1.30820 * 119.99866 * 17.87402 * 21 19 18 23 23 Si 1.86806 * 120.00150 * 197.87763 * 21 19 18 24 24 H 1.48496 * 109.46873 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46964 * 119.99937 * 23 21 19 26 26 H 1.48501 * 109.47127 * 239.99757 * 23 21 19 27 27 C 1.40714 * 119.51000 * 359.76756 * 18 17 16 28 28 C 1.37624 * 119.74294 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.46971 * 180.34944 * 1 2 3 30 30 H 1.08995 * 109.47178 * 300.34657 * 1 2 3 31 31 H 1.09002 * 109.47114 * 60.35707 * 1 2 3 32 32 H 1.09001 * 109.47126 * 304.99154 * 6 4 2 33 33 H 1.09000 * 109.47756 * 64.99673 * 6 4 2 34 34 H 0.96696 * 114.00050 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.45929 * 181.38839 * 8 4 2 36 36 H 1.08998 * 109.46206 * 301.35618 * 8 4 2 37 37 H 1.09006 * 109.49499 * 58.58858 * 9 8 4 38 38 H 1.09001 * 109.49867 * 178.68181 * 9 8 4 39 39 H 1.08989 * 109.59052 * 294.84488 * 10 9 8 40 40 H 1.09001 * 109.58461 * 174.41785 * 10 9 8 41 41 H 1.07993 * 119.87925 * 0.02562 * 16 15 12 42 42 H 1.08006 * 120.12448 * 180.27644 * 17 16 15 43 43 H 0.97005 * 119.99629 * 180.02562 * 22 21 19 44 44 H 1.07994 * 120.12828 * 180.02562 * 27 18 17 45 45 H 1.07998 * 119.87361 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 1 3.1297 -0.6504 1.2913 6 6 1.4315 -0.0966 2.4966 7 8 1.9988 -0.6994 3.6615 8 6 1.6415 -2.2042 1.1700 9 6 2.2801 -2.8464 -0.0637 10 6 1.7692 -2.1410 -1.3239 11 7 2.0226 -0.6995 -1.1946 12 16 2.8417 0.1226 -2.3759 13 8 2.6908 -0.6338 -3.5693 14 8 2.4491 1.4837 -2.2636 15 6 4.5533 0.0627 -1.9619 16 6 5.1064 1.0621 -1.1762 17 6 6.4410 1.0228 -0.8426 18 6 7.2470 -0.0314 -1.3107 19 6 8.6204 -0.0796 -0.9781 20 1 9.3111 -0.6154 -1.6124 21 6 9.0847 0.5667 0.1730 22 7 8.2440 0.9094 1.1149 23 14 10.9050 0.9403 0.3645 24 1 11.6386 0.4537 -0.8314 25 1 11.0977 2.4063 0.5015 26 1 11.4257 0.2573 1.5759 27 6 6.6760 -1.0374 -2.1120 28 6 5.3379 -0.9806 -2.4287 29 1 -0.3633 -1.0277 0.0063 30 1 -0.3633 0.5192 0.8868 31 1 -0.3633 0.5083 -0.8932 32 1 1.6411 0.9730 2.5025 33 1 0.3531 -0.2556 2.4938 34 1 1.6563 -0.3457 4.4938 35 1 1.9844 -2.7203 2.0666 36 1 0.5566 -2.2816 1.0989 37 1 3.3641 -2.7474 -0.0054 38 1 2.0124 -3.9022 -0.1040 39 1 0.6988 -2.3155 -1.4319 40 1 2.2945 -2.5273 -2.1973 41 1 4.4867 1.8721 -0.8211 42 1 6.8689 1.8000 -0.2267 43 1 8.5659 1.3577 1.9126 44 1 7.2852 -1.8512 -2.4763 45 1 4.8973 -1.7518 -3.0431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647226069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:52 Heat of formation + Delta-G solvation = -143.796765 kcal Electronic energy + Delta-G solvation = -28807.616861 eV Core-core repulsion = 24914.931700 eV Total energy + Delta-G solvation = -3892.685161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.40862 -39.39973 -38.24251 -37.43254 -36.81428 -35.82528 -33.62727 -33.35674 -32.09017 -31.31965 -28.88385 -27.63074 -26.73748 -24.29104 -23.35969 -22.98987 -22.95594 -20.59619 -19.47886 -19.37669 -18.75018 -18.41617 -18.19166 -17.23275 -16.78162 -16.21900 -15.87518 -15.78688 -15.46599 -15.32998 -15.16805 -15.01301 -14.47802 -14.25340 -14.11459 -13.98409 -13.91488 -13.62090 -13.37175 -13.14868 -13.11560 -13.04828 -12.94363 -12.89931 -12.64106 -12.61378 -12.33215 -12.08911 -12.00301 -11.79680 -11.57265 -11.35448 -11.28675 -11.26408 -11.17673 -10.72354 -9.92400 -9.75653 -9.57640 -8.89166 -6.66817 -0.36748 0.46469 1.02915 1.33844 1.39914 1.51199 2.09552 2.12342 2.49553 2.91211 3.29423 3.48209 3.53776 3.63449 3.88704 4.04920 4.18324 4.24604 4.25699 4.27948 4.29389 4.44630 4.49181 4.53246 4.62760 4.79220 4.83431 4.84926 4.88113 4.92518 5.00382 5.06810 5.09714 5.16549 5.21875 5.25650 5.36403 5.46198 5.49402 5.56643 5.58948 5.69775 5.79409 5.91290 6.12935 6.46601 6.66072 6.78718 6.98394 8.06120 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.004252 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.826384 B = 6583.539042 C = 7798.366157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.152 3.848 3 H 0.080 0.920 4 C -0.099 4.099 5 H 0.044 0.956 6 C 0.083 3.917 7 O -0.593 6.593 8 C -0.098 4.098 9 C -0.135 4.135 10 C 0.116 3.884 11 N -0.991 5.991 12 S 2.716 3.284 13 O -0.996 6.996 14 O -1.000 7.000 15 C -0.798 4.798 16 C -0.020 4.020 17 C -0.206 4.206 18 C 0.111 3.889 19 C -0.466 4.466 20 H 0.091 0.909 21 C 0.034 3.966 22 N -0.796 5.796 23 Si 0.991 3.009 24 H -0.254 1.254 25 H -0.261 1.261 26 H -0.260 1.260 27 C -0.257 4.257 28 C -0.001 4.001 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.396 0.604 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.041 0.959 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.298 0.702 44 H 0.111 0.889 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.054 -3.776 5.606 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 H 0.098 0.902 4 C -0.120 4.120 5 H 0.063 0.937 6 C 0.005 3.995 7 O -0.401 6.401 8 C -0.136 4.136 9 C -0.173 4.173 10 C -0.008 4.008 11 N -0.829 5.829 12 S 2.813 3.187 13 O -0.987 6.987 14 O -0.990 6.990 15 C -0.890 4.890 16 C -0.040 4.040 17 C -0.227 4.227 18 C 0.108 3.892 19 C -0.493 4.493 20 H 0.109 0.891 21 C -0.185 4.185 22 N -0.419 5.419 23 Si 0.811 3.189 24 H -0.177 1.177 25 H -0.186 1.186 26 H -0.185 1.185 27 C -0.277 4.277 28 C -0.021 4.021 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.245 0.755 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.173 -3.614 4.642 14.427 hybrid contribution 1.568 0.521 0.937 1.900 sum -11.605 -3.093 5.579 13.243 Atomic orbital electron populations 1.22241 0.92276 1.04016 1.03324 1.20948 0.96449 0.94905 0.83117 0.90193 1.21448 0.99803 0.97406 0.93318 0.93727 1.22260 0.97439 0.95603 0.84214 1.86462 1.69970 1.66438 1.17242 1.21419 1.01484 0.93280 0.97380 1.21929 0.99980 1.00660 0.94776 1.21616 1.02778 0.77679 0.98710 1.57754 1.70445 1.18889 1.35803 1.00621 0.73251 0.72076 0.72732 1.93443 1.87187 1.72790 1.45235 1.93438 1.83167 1.35374 1.87038 1.29767 1.23942 1.09773 1.25523 1.20393 0.95405 0.95057 0.93175 1.21334 0.94130 1.00545 1.06643 1.18191 0.93703 0.89312 0.88024 1.20247 0.93734 1.28119 1.07209 0.89074 1.27022 1.05877 0.91845 0.93753 1.69863 1.39729 1.26462 1.05840 0.85010 0.74914 0.79257 0.79768 1.17683 1.18561 1.18488 1.21268 0.95441 1.01254 1.09742 1.20418 0.93873 0.94374 0.93427 0.89971 0.89086 0.92538 0.93438 0.90166 0.75454 0.92010 0.89247 0.94035 0.88419 0.88303 0.90030 0.87197 0.87214 0.89078 0.87094 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 8.51 71.98 0.61 -2.39 16 2 C 0.15 4.05 2.74 44.97 0.12 4.18 16 3 H 0.08 2.40 7.13 -2.39 -0.02 2.38 16 4 C -0.10 -2.62 2.36 -10.72 -0.03 -2.64 16 5 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 6 C 0.08 1.69 5.76 71.98 0.41 2.11 16 7 O -0.59 -13.24 13.18 -148.98 -1.96 -15.20 16 8 C -0.10 -2.19 4.87 30.62 0.15 -2.04 16 9 C -0.13 -3.21 6.08 30.67 0.19 -3.03 16 10 C 0.12 2.92 5.96 86.36 0.51 3.43 16 11 N -0.99 -30.31 3.00 -490.77 -1.47 -31.78 16 12 S 2.72 106.71 5.69 -56.49 -0.32 106.39 16 13 O -1.00 -41.60 15.97 -128.00 -2.04 -43.64 16 14 O -1.00 -42.84 15.97 -128.00 -2.04 -44.88 16 15 C -0.80 -36.46 6.00 22.46 0.13 -36.33 16 16 C -0.02 -0.99 9.49 22.22 0.21 -0.78 16 17 C -0.21 -10.97 8.70 22.73 0.20 -10.77 16 18 C 0.11 5.95 5.58 -21.29 -0.12 5.83 16 19 C -0.47 -23.91 9.05 23.46 0.21 -23.70 16 20 H 0.09 4.42 7.91 -2.91 -0.02 4.40 16 21 C 0.03 1.63 5.14 85.26 0.44 2.07 16 22 N -0.80 -39.31 10.95 21.83 0.24 -39.07 16 23 Si 0.99 35.31 29.60 68.60 2.03 37.34 16 24 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 25 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 26 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 27 C -0.26 -12.68 9.80 22.73 0.22 -12.46 16 28 C 0.00 -0.05 9.49 22.22 0.21 0.16 16 29 H 0.08 1.25 5.72 -2.39 -0.01 1.24 16 30 H 0.09 1.26 6.52 -2.39 -0.02 1.24 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.13 6.68 -2.39 -0.02 1.11 16 34 H 0.40 4.79 9.12 -74.06 -0.68 4.12 16 35 H 0.06 1.48 7.79 -2.39 -0.02 1.47 16 36 H 0.09 1.49 6.49 -2.39 -0.02 1.48 16 37 H 0.04 1.25 8.14 -2.38 -0.02 1.24 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 1.86 7.50 -2.39 -0.02 1.84 16 40 H 0.08 2.17 7.12 -2.39 -0.02 2.15 16 41 H 0.11 5.01 7.59 -2.91 -0.02 4.99 16 42 H 0.11 5.96 6.16 -2.91 -0.02 5.94 16 43 H 0.30 13.04 8.30 -92.70 -0.77 12.27 16 44 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 45 H 0.12 5.03 7.60 -2.91 -0.02 5.01 16 Total: -1.00 -68.71 365.60 -1.75 -70.46 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: 0.34 Total: 36.77 kcal Atomic # 6 Polarization: -79.86 SS G_CDS: 3.48 Total: -76.38 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -1.23 Total: -70.85 kcal Atomic # 8 Polarization: -97.68 SS G_CDS: -6.05 Total: -103.73 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Atomic # 16 Polarization: 106.71 SS G_CDS: -0.32 Total: 106.39 kcal Total: -68.71 -1.75 -70.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647226069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.335 kcal (2) G-P(sol) polarization free energy of solvation -68.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds