Wall clock time and date at job start Tue Mar 31 2020 23:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.58487 * 2 1 4 4 C 1.53191 * 109.70420 * 120.35950 * 2 1 3 5 5 H 1.08995 * 109.50006 * 54.54216 * 4 2 1 6 6 C 1.53005 * 109.49722 * 294.44330 * 4 2 1 7 7 O 1.42901 * 109.46991 * 175.00272 * 6 4 2 8 8 C 1.53044 * 109.30999 * 174.49547 * 4 2 1 9 9 C 1.53033 * 109.53534 * 298.63168 * 8 4 2 10 10 C 1.52762 * 109.38506 * 61.24445 * 9 8 4 11 11 N 1.46921 * 109.00763 * 305.58635 * 10 9 8 12 12 S 1.65606 * 120.63120 * 233.58559 * 11 10 9 13 13 O 1.42102 * 106.40231 * 150.33731 * 12 11 10 14 14 O 1.42094 * 106.40198 * 17.41476 * 12 11 10 15 15 C 1.76202 * 107.21376 * 263.87341 * 12 11 10 16 16 C 1.38638 * 119.74832 * 90.00352 * 15 12 11 17 17 C 1.37617 * 120.24436 * 179.97438 * 16 15 12 18 18 C 1.40716 * 119.74918 * 0.02562 * 17 16 15 19 19 C 1.41397 * 120.24221 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00307 * 330.35050 * 19 18 17 21 21 C 1.39946 * 119.99627 * 150.35408 * 19 18 17 22 22 N 1.30822 * 120.00475 * 335.24505 * 21 19 18 23 23 Si 1.86797 * 119.99732 * 155.24402 * 21 19 18 24 24 H 1.48500 * 109.47535 * 90.00233 * 23 21 19 25 25 H 1.48505 * 109.47154 * 210.00257 * 23 21 19 26 26 H 1.48499 * 109.47324 * 329.99678 * 23 21 19 27 27 C 1.40717 * 119.50845 * 0.26957 * 18 17 16 28 28 C 1.37611 * 119.74570 * 359.47455 * 27 18 17 29 29 H 1.08997 * 109.47169 * 185.94886 * 1 2 3 30 30 H 1.09005 * 109.47348 * 305.94749 * 1 2 3 31 31 H 1.09003 * 109.47351 * 65.94660 * 1 2 3 32 32 H 1.09001 * 109.46889 * 295.00458 * 6 4 2 33 33 H 1.09002 * 109.47066 * 54.99952 * 6 4 2 34 34 H 0.96696 * 113.99801 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.46285 * 58.65630 * 8 4 2 36 36 H 1.08997 * 109.45760 * 178.62850 * 8 4 2 37 37 H 1.09004 * 109.49820 * 181.31915 * 9 8 4 38 38 H 1.09009 * 109.50090 * 301.38555 * 9 8 4 39 39 H 1.09004 * 109.50894 * 185.70585 * 10 9 8 40 40 H 1.08991 * 109.43201 * 65.42448 * 10 9 8 41 41 H 1.07996 * 119.87630 * 0.02562 * 16 15 12 42 42 H 1.08003 * 120.12396 * 179.97438 * 17 16 15 43 43 H 0.97002 * 119.99800 * 354.19777 * 22 21 19 44 44 H 1.08002 * 120.12568 * 179.70747 * 27 18 17 45 45 H 1.08000 * 119.87681 * 180.27261 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7289 1.2444 5 1 1.6080 -1.7257 1.2904 6 6 1.6568 0.0594 2.4966 7 8 2.0360 -0.6777 3.6606 8 6 3.5706 -0.8443 1.1673 9 6 3.9602 -1.6606 -0.0671 10 6 3.4647 -0.9472 -1.3238 11 7 2.0225 -0.6979 -1.1954 12 16 0.9713 -1.2002 -2.3724 13 8 -0.2633 -1.4660 -1.7209 14 8 1.6669 -2.1690 -3.1448 15 6 0.6859 0.1741 -3.4376 16 6 1.5040 0.3720 -4.5393 17 6 1.2900 1.4416 -5.3783 18 6 0.2365 2.3363 -5.1143 19 6 0.0069 3.4385 -5.9698 20 1 0.8310 3.8894 -6.5026 21 6 -1.2883 3.9450 -6.1260 22 7 -2.3228 3.1739 -5.9096 23 14 -1.5401 5.7220 -6.6436 24 1 -1.5972 5.8028 -8.1253 25 1 -2.8130 6.2289 -6.0707 26 1 -0.4102 6.5474 -6.1461 27 6 -0.5835 2.1290 -3.9897 28 6 -0.3544 1.0497 -3.1673 29 1 -0.3633 -1.0221 0.1065 30 1 -0.3634 0.6033 0.8320 31 1 -0.3634 0.4189 -0.9384 32 1 2.1679 1.0221 2.4935 33 1 0.5788 0.2205 2.5036 34 1 1.8185 -0.2369 4.4933 35 1 4.0071 0.1519 1.0964 36 1 3.9430 -1.3410 2.0632 37 1 5.0446 -1.7623 -0.1087 38 1 3.5041 -2.6490 -0.0086 39 1 3.6509 -1.5744 -2.1957 40 1 3.9911 0.0008 -1.4340 41 1 2.3116 -0.3162 -4.7402 42 1 1.9287 1.5942 -6.2358 43 1 -2.1941 2.2307 -5.7233 44 1 -1.3919 2.8122 -3.7749 45 1 -0.9852 0.8861 -2.3061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647226084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:57 Heat of formation + Delta-G solvation = -112.250491 kcal Electronic energy + Delta-G solvation = -28554.805940 eV Core-core repulsion = 24663.488728 eV Total energy + Delta-G solvation = -3891.317212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.31713 -37.85966 -36.87948 -36.63598 -35.22563 -34.24249 -32.82953 -32.53179 -30.18309 -29.57347 -27.61378 -25.81331 -25.64063 -23.24785 -21.64958 -21.49935 -21.40868 -20.23903 -18.50922 -18.17950 -17.61558 -16.90161 -16.62353 -15.82810 -15.26096 -14.84646 -14.76592 -14.46546 -14.34269 -14.19370 -13.91584 -13.77710 -13.33601 -13.16247 -12.85357 -12.64912 -12.51245 -12.42174 -12.16792 -11.89085 -11.66462 -11.54261 -11.41551 -11.28745 -11.22289 -11.14350 -10.93628 -10.66001 -10.59703 -10.52751 -10.27899 -10.02147 -9.97432 -9.80966 -9.55096 -9.33741 -8.72395 -8.12264 -7.98021 -7.55434 -4.90968 1.11794 2.15335 2.69010 2.96904 3.02566 3.18278 3.48868 3.76478 4.04986 4.18962 4.44453 4.59877 4.70872 4.87739 4.99306 5.01531 5.13734 5.16438 5.26302 5.32385 5.37385 5.43670 5.63944 5.66307 5.73654 5.80582 5.84827 5.91325 5.92057 6.05514 6.12279 6.23823 6.32471 6.38789 6.48923 6.57940 6.73433 6.83334 6.91826 7.08175 7.23278 7.38058 7.43251 7.44045 7.47632 7.83138 7.99394 8.38253 8.49766 9.67515 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017079 B = 0.003336 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.084841 B = 8390.140572 C = 9007.732746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.072 0.928 4 C -0.096 4.096 5 H 0.083 0.917 6 C 0.080 3.920 7 O -0.573 6.573 8 C -0.108 4.108 9 C -0.132 4.132 10 C 0.117 3.883 11 N -0.998 5.998 12 S 2.692 3.308 13 O -0.976 6.976 14 O -0.985 6.985 15 C -0.794 4.794 16 C 0.007 3.993 17 C -0.236 4.236 18 C 0.120 3.880 19 C -0.490 4.490 20 H 0.086 0.914 21 C 0.034 3.966 22 N -0.770 5.770 23 Si 1.070 2.930 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.272 1.272 27 C -0.229 4.229 28 C -0.001 4.001 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.377 0.623 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.304 0.696 44 H 0.108 0.892 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 -1.548 12.756 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.059 3.941 3 H 0.090 0.910 4 C -0.116 4.116 5 H 0.101 0.899 6 C 0.001 3.999 7 O -0.378 6.378 8 C -0.145 4.145 9 C -0.171 4.171 10 C -0.008 4.008 11 N -0.834 5.834 12 S 2.793 3.207 13 O -0.967 6.967 14 O -0.976 6.976 15 C -0.890 4.890 16 C -0.013 4.013 17 C -0.256 4.256 18 C 0.116 3.884 19 C -0.517 4.517 20 H 0.104 0.896 21 C -0.191 4.191 22 N -0.391 5.391 23 Si 0.892 3.108 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.249 4.249 28 C -0.021 4.021 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.223 0.777 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.126 0.874 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.203 -1.759 11.967 13.593 hybrid contribution 1.085 0.009 0.390 1.153 sum 7.288 -1.750 12.357 14.452 Atomic orbital electron populations 1.23020 0.92755 1.05826 1.03499 1.20777 0.94629 0.95213 0.83523 0.90965 1.21533 0.96928 1.00642 0.92491 0.89891 1.22242 0.98661 0.93808 0.85142 1.86465 1.85476 1.49731 1.16125 1.21469 0.94684 1.00367 0.98010 1.21819 1.00821 0.99618 0.94864 1.21310 0.80100 1.00424 0.98962 1.57933 1.17726 1.74388 1.33348 1.01392 0.72561 0.74482 0.72280 1.93572 1.43648 1.85350 1.74112 1.93446 1.74804 1.58938 1.70387 1.29259 1.13978 1.27148 1.18599 1.20185 0.94498 0.95011 0.91655 1.21027 1.04638 0.97882 1.02051 1.17885 0.90324 0.89934 0.90288 1.20940 0.97126 1.11245 1.22352 0.89635 1.27293 0.91605 1.07211 0.92958 1.70426 1.33945 1.09618 1.25121 0.83564 0.77526 0.72031 0.77667 1.19837 1.19414 1.19702 1.21175 1.05213 1.00678 0.97824 1.20335 0.92884 0.92175 0.96682 0.88130 0.92049 0.90330 0.93544 0.92904 0.77658 0.92055 0.91199 0.90860 0.91570 0.88809 0.91645 0.87750 0.88080 0.88202 0.87386 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 7.14 37.16 0.27 -2.56 16 2 C 0.17 2.24 2.97 -67.60 -0.20 2.04 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.10 -1.14 2.05 -90.50 -0.19 -1.33 16 5 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 6 C 0.08 0.78 6.31 37.16 0.23 1.02 16 7 O -0.57 -5.57 13.18 -35.23 -0.46 -6.03 16 8 C -0.11 -1.17 5.08 -26.69 -0.14 -1.31 16 9 C -0.13 -1.48 6.06 -26.84 -0.16 -1.64 16 10 C 0.12 1.56 6.47 -3.93 -0.03 1.53 16 11 N -1.00 -15.40 3.30 -106.72 -0.35 -15.75 16 12 S 2.69 51.62 5.28 -107.50 -0.57 51.05 16 13 O -0.98 -19.75 12.44 -57.17 -0.71 -20.47 16 14 O -0.98 -20.82 15.71 -57.17 -0.90 -21.72 16 15 C -0.79 -17.16 5.99 -39.29 -0.24 -17.39 16 16 C 0.01 0.15 9.49 -39.66 -0.38 -0.23 16 17 C -0.24 -5.53 9.80 -38.87 -0.38 -5.91 16 18 C 0.12 2.98 5.19 -106.82 -0.55 2.42 16 19 C -0.49 -11.99 8.97 -37.74 -0.34 -12.33 16 20 H 0.09 2.00 7.96 -52.49 -0.42 1.58 16 21 C 0.03 0.80 4.92 -17.34 -0.09 0.71 16 22 N -0.77 -19.11 12.47 55.55 0.69 -18.42 16 23 Si 1.07 19.62 30.00 -169.99 -5.10 14.52 16 24 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 25 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 26 H -0.27 -4.78 7.11 56.52 0.40 -4.37 16 27 C -0.23 -5.52 8.00 -38.87 -0.31 -5.83 16 28 C 0.00 -0.02 8.82 -39.66 -0.35 -0.37 16 29 H 0.10 1.60 6.31 -51.93 -0.33 1.27 16 30 H 0.06 0.72 6.81 -51.93 -0.35 0.37 16 31 H 0.08 1.30 3.19 -51.93 -0.17 1.14 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.49 6.53 -51.93 -0.34 0.15 16 34 H 0.38 1.92 9.12 45.56 0.42 2.33 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.76 7.79 -51.93 -0.40 0.35 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 39 H 0.09 1.30 6.79 -51.93 -0.35 0.95 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.10 2.09 7.60 -52.49 -0.40 1.69 16 42 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 43 H 0.30 7.83 6.85 -40.82 -0.28 7.55 16 44 H 0.11 2.63 6.82 -52.49 -0.36 2.28 16 45 H 0.11 2.24 5.39 -52.49 -0.28 1.96 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -29.86 357.18 -10.30 -40.16 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.44 Total: 12.44 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: -2.84 Total: -41.18 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.34 Total: -34.17 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -2.07 Total: -48.21 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.10 Total: 14.52 kcal Atomic # 16 Polarization: 51.62 SS G_CDS: -0.57 Total: 51.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.86 -10.30 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647226084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.088 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds