Wall clock time and date at job start Tue Mar 31 2020 23:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.58487 * 2 1 4 4 C 1.53191 * 109.70420 * 120.35950 * 2 1 3 5 5 H 1.08995 * 109.50006 * 54.54216 * 4 2 1 6 6 C 1.53005 * 109.49722 * 294.44330 * 4 2 1 7 7 O 1.42901 * 109.46991 * 175.00272 * 6 4 2 8 8 C 1.53044 * 109.30999 * 174.49547 * 4 2 1 9 9 C 1.53033 * 109.53534 * 298.63168 * 8 4 2 10 10 C 1.52762 * 109.38506 * 61.24445 * 9 8 4 11 11 N 1.46921 * 109.00763 * 305.58635 * 10 9 8 12 12 S 1.65606 * 120.63120 * 233.58559 * 11 10 9 13 13 O 1.42102 * 106.40231 * 150.33731 * 12 11 10 14 14 O 1.42094 * 106.40198 * 17.41476 * 12 11 10 15 15 C 1.76202 * 107.21376 * 263.87341 * 12 11 10 16 16 C 1.38638 * 119.74832 * 90.00352 * 15 12 11 17 17 C 1.37617 * 120.24436 * 179.97438 * 16 15 12 18 18 C 1.40716 * 119.74918 * 0.02562 * 17 16 15 19 19 C 1.41397 * 120.24221 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00307 * 330.35050 * 19 18 17 21 21 C 1.39946 * 119.99627 * 150.35408 * 19 18 17 22 22 N 1.30822 * 120.00475 * 335.24505 * 21 19 18 23 23 Si 1.86797 * 119.99732 * 155.24402 * 21 19 18 24 24 H 1.48500 * 109.47535 * 90.00233 * 23 21 19 25 25 H 1.48505 * 109.47154 * 210.00257 * 23 21 19 26 26 H 1.48499 * 109.47324 * 329.99678 * 23 21 19 27 27 C 1.40717 * 119.50845 * 0.26957 * 18 17 16 28 28 C 1.37611 * 119.74570 * 359.47455 * 27 18 17 29 29 H 1.08997 * 109.47169 * 185.94886 * 1 2 3 30 30 H 1.09005 * 109.47348 * 305.94749 * 1 2 3 31 31 H 1.09003 * 109.47351 * 65.94660 * 1 2 3 32 32 H 1.09001 * 109.46889 * 295.00458 * 6 4 2 33 33 H 1.09002 * 109.47066 * 54.99952 * 6 4 2 34 34 H 0.96696 * 113.99801 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.46285 * 58.65630 * 8 4 2 36 36 H 1.08997 * 109.45760 * 178.62850 * 8 4 2 37 37 H 1.09004 * 109.49820 * 181.31915 * 9 8 4 38 38 H 1.09009 * 109.50090 * 301.38555 * 9 8 4 39 39 H 1.09004 * 109.50894 * 185.70585 * 10 9 8 40 40 H 1.08991 * 109.43201 * 65.42448 * 10 9 8 41 41 H 1.07996 * 119.87630 * 0.02562 * 16 15 12 42 42 H 1.08003 * 120.12396 * 179.97438 * 17 16 15 43 43 H 0.97002 * 119.99800 * 354.19777 * 22 21 19 44 44 H 1.08002 * 120.12568 * 179.70747 * 27 18 17 45 45 H 1.08000 * 119.87681 * 180.27261 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7289 1.2444 5 1 1.6080 -1.7257 1.2904 6 6 1.6568 0.0594 2.4966 7 8 2.0360 -0.6777 3.6606 8 6 3.5706 -0.8443 1.1673 9 6 3.9602 -1.6606 -0.0671 10 6 3.4647 -0.9472 -1.3238 11 7 2.0225 -0.6979 -1.1954 12 16 0.9713 -1.2002 -2.3724 13 8 -0.2633 -1.4660 -1.7209 14 8 1.6669 -2.1690 -3.1448 15 6 0.6859 0.1741 -3.4376 16 6 1.5040 0.3720 -4.5393 17 6 1.2900 1.4416 -5.3783 18 6 0.2365 2.3363 -5.1143 19 6 0.0069 3.4385 -5.9698 20 1 0.8310 3.8894 -6.5026 21 6 -1.2883 3.9450 -6.1260 22 7 -2.3228 3.1739 -5.9096 23 14 -1.5401 5.7220 -6.6436 24 1 -1.5972 5.8028 -8.1253 25 1 -2.8130 6.2289 -6.0707 26 1 -0.4102 6.5474 -6.1461 27 6 -0.5835 2.1290 -3.9897 28 6 -0.3544 1.0497 -3.1673 29 1 -0.3633 -1.0221 0.1065 30 1 -0.3634 0.6033 0.8320 31 1 -0.3634 0.4189 -0.9384 32 1 2.1679 1.0221 2.4935 33 1 0.5788 0.2205 2.5036 34 1 1.8185 -0.2369 4.4933 35 1 4.0071 0.1519 1.0964 36 1 3.9430 -1.3410 2.0632 37 1 5.0446 -1.7623 -0.1087 38 1 3.5041 -2.6490 -0.0086 39 1 3.6509 -1.5744 -2.1957 40 1 3.9911 0.0008 -1.4340 41 1 2.3116 -0.3162 -4.7402 42 1 1.9287 1.5942 -6.2358 43 1 -2.1941 2.2307 -5.7233 44 1 -1.3919 2.8122 -3.7749 45 1 -0.9852 0.8861 -2.3061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647226084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:56 Heat of formation + Delta-G solvation = -132.361508 kcal Electronic energy + Delta-G solvation = -28555.678020 eV Core-core repulsion = 24663.488728 eV Total energy + Delta-G solvation = -3892.189291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.32499 -39.66651 -38.45295 -37.43307 -36.84655 -36.02565 -33.87946 -33.55197 -31.98402 -31.38696 -28.67122 -27.45798 -26.71505 -24.35100 -23.33921 -23.21636 -22.53801 -21.22913 -20.08646 -19.86516 -18.66067 -18.17697 -18.03511 -17.13465 -16.62282 -16.33429 -15.99507 -15.79208 -15.48301 -15.42937 -15.34698 -15.06923 -14.77296 -14.47633 -14.23526 -14.08821 -13.99161 -13.60650 -13.42901 -13.33899 -13.25274 -13.11209 -12.89649 -12.82734 -12.48606 -12.26619 -12.06146 -11.94605 -11.82459 -11.77704 -11.67408 -11.37972 -11.21725 -11.09398 -11.05401 -10.72889 -10.03574 -9.86227 -9.80326 -9.39408 -6.78801 -0.41794 0.36344 0.83554 1.48062 1.54572 1.78380 2.08632 2.24365 2.47634 2.87156 3.25155 3.29263 3.52984 3.57623 3.77561 3.97399 4.05910 4.09328 4.14899 4.21982 4.31927 4.40664 4.50374 4.55434 4.62732 4.69629 4.73365 4.80111 4.82591 4.85178 4.98725 5.00940 5.05922 5.14716 5.23301 5.28912 5.31511 5.39618 5.45738 5.49748 5.54085 5.58949 5.62495 5.76119 5.99930 6.16164 6.54517 6.67212 6.96474 7.80497 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017079 B = 0.003336 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.084841 B = 8390.140572 C = 9007.732746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.162 3.838 3 H 0.089 0.911 4 C -0.095 4.095 5 H 0.064 0.936 6 C 0.083 3.917 7 O -0.589 6.589 8 C -0.104 4.104 9 C -0.129 4.129 10 C 0.107 3.893 11 N -0.993 5.993 12 S 2.714 3.286 13 O -0.988 6.988 14 O -1.004 7.004 15 C -0.799 4.799 16 C 0.002 3.998 17 C -0.253 4.253 18 C 0.097 3.903 19 C -0.522 4.522 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.794 5.794 23 Si 1.121 2.879 24 H -0.258 1.258 25 H -0.268 1.268 26 H -0.259 1.259 27 C -0.247 4.247 28 C -0.002 4.002 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.397 0.603 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.287 0.713 44 H 0.097 0.903 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.049 -0.874 14.520 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.056 3.944 3 H 0.106 0.894 4 C -0.115 4.115 5 H 0.082 0.918 6 C 0.004 3.996 7 O -0.397 6.397 8 C -0.141 4.141 9 C -0.168 4.168 10 C -0.017 4.017 11 N -0.831 5.831 12 S 2.812 3.188 13 O -0.979 6.979 14 O -0.995 6.995 15 C -0.891 4.891 16 C -0.018 4.018 17 C -0.273 4.273 18 C 0.093 3.907 19 C -0.548 4.548 20 H 0.107 0.893 21 C -0.215 4.215 22 N -0.415 5.415 23 Si 0.937 3.063 24 H -0.182 1.182 25 H -0.193 1.193 26 H -0.183 1.183 27 C -0.267 4.267 28 C -0.021 4.021 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.247 0.753 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.143 0.857 42 H 0.129 0.871 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.706 -1.077 13.715 15.769 hybrid contribution 0.717 -0.385 0.020 0.814 sum 8.424 -1.462 13.735 16.178 Atomic orbital electron populations 1.22984 0.93702 1.05215 1.03494 1.20981 0.93961 0.96074 0.83371 0.89358 1.21486 0.97640 0.99728 0.92671 0.91764 1.22171 0.99154 0.93889 0.84355 1.86407 1.85640 1.50557 1.17130 1.21455 0.93787 1.01049 0.97824 1.21827 1.02281 0.98782 0.93906 1.21600 0.78599 1.01598 0.99901 1.57658 1.18378 1.74477 1.32631 1.00775 0.72520 0.73406 0.72102 1.93577 1.45017 1.85302 1.73955 1.93417 1.75186 1.59326 1.71525 1.29823 1.13051 1.27091 1.19107 1.20480 0.95011 0.94846 0.91417 1.21257 1.04818 0.98352 1.02874 1.18209 0.91040 0.90607 0.90800 1.21151 0.97916 1.12232 1.23522 0.89332 1.28701 0.90938 1.10335 0.91556 1.70547 1.34464 1.08814 1.27627 0.82961 0.77800 0.67367 0.78198 1.18200 1.19269 1.18276 1.21188 1.05392 1.01636 0.98469 1.20593 0.93122 0.91600 0.96790 0.89705 0.89074 0.92553 0.91829 0.92451 0.75310 0.90711 0.90783 0.88267 0.92638 0.89622 0.89819 0.85723 0.87142 0.90105 0.88497 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.46 7.14 71.98 0.51 -4.94 16 2 C 0.16 4.05 2.97 44.97 0.13 4.18 16 3 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.09 -2.03 2.05 -10.71 -0.02 -2.05 16 5 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 6 C 0.08 1.36 6.31 71.98 0.45 1.82 16 7 O -0.59 -9.73 13.18 -148.98 -1.96 -11.69 16 8 C -0.10 -1.93 5.08 30.62 0.16 -1.77 16 9 C -0.13 -2.54 6.06 30.53 0.19 -2.36 16 10 C 0.11 2.61 6.47 86.22 0.56 3.16 16 11 N -0.99 -29.04 3.30 -491.56 -1.62 -30.66 16 12 S 2.71 102.42 5.28 -56.49 -0.30 102.13 16 13 O -0.99 -39.75 12.44 -128.00 -1.59 -41.34 16 14 O -1.00 -41.78 15.71 -128.00 -2.01 -43.79 16 15 C -0.80 -34.42 5.99 22.46 0.13 -34.29 16 16 C 0.00 0.09 9.49 22.22 0.21 0.31 16 17 C -0.25 -12.05 9.80 22.73 0.22 -11.83 16 18 C 0.10 4.97 5.19 -21.29 -0.11 4.86 16 19 C -0.52 -26.19 8.97 23.46 0.21 -25.98 16 20 H 0.09 4.23 7.96 -2.91 -0.02 4.21 16 21 C 0.00 0.18 4.92 85.26 0.42 0.60 16 22 N -0.79 -40.68 12.47 21.83 0.27 -40.41 16 23 Si 1.12 39.31 30.00 68.60 2.06 41.37 16 24 H -0.26 -8.35 7.11 99.48 0.71 -7.65 16 25 H -0.27 -9.27 7.11 99.48 0.71 -8.57 16 26 H -0.26 -8.43 7.11 99.48 0.71 -7.72 16 27 C -0.25 -12.30 8.00 22.73 0.18 -12.12 16 28 C 0.00 -0.07 8.82 22.22 0.20 0.12 16 29 H 0.08 2.64 6.31 -2.39 -0.02 2.62 16 30 H 0.09 1.94 6.81 -2.38 -0.02 1.93 16 31 H 0.06 1.82 3.19 -2.39 -0.01 1.81 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.88 6.53 -2.39 -0.02 0.87 16 34 H 0.40 2.84 9.12 -74.06 -0.68 2.16 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.36 7.79 -2.39 -0.02 1.34 16 37 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.09 2.23 6.79 -2.38 -0.02 2.21 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.12 4.90 7.60 -2.91 -0.02 4.88 16 42 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 43 H 0.29 15.51 6.85 -92.71 -0.63 14.87 16 44 H 0.10 4.95 6.82 -2.91 -0.02 4.93 16 45 H 0.13 5.23 5.39 -2.91 -0.02 5.22 16 Total: -1.00 -65.51 357.18 -1.23 -66.74 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: 0.48 Total: 37.94 kcal Atomic # 6 Polarization: -83.73 SS G_CDS: 3.44 Total: -80.29 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -1.35 Total: -71.07 kcal Atomic # 8 Polarization: -91.25 SS G_CDS: -5.57 Total: -96.82 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.06 Total: 41.37 kcal Atomic # 16 Polarization: 102.42 SS G_CDS: -0.30 Total: 102.13 kcal Total: -65.51 -1.23 -66.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647226084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.623 kcal (2) G-P(sol) polarization free energy of solvation -65.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds