Wall clock time and date at job start Tue Mar 31 2020 23:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.58692 * 2 1 4 4 C 1.53190 * 109.59159 * 239.57267 * 2 1 3 5 5 H 1.08992 * 109.50134 * 174.89817 * 4 2 1 6 6 C 1.53001 * 109.49773 * 54.82666 * 4 2 1 7 7 O 1.42896 * 109.46855 * 174.99913 * 6 4 2 8 8 C 1.53112 * 109.32614 * 294.84823 * 4 2 1 9 9 C 1.53034 * 109.50353 * 298.65435 * 8 4 2 10 10 C 1.53193 * 109.34124 * 61.35035 * 9 8 4 11 11 N 1.46929 * 109.58593 * 120.27793 * 2 1 3 12 12 S 1.65593 * 120.63525 * 246.20140 * 11 2 1 13 13 O 1.42106 * 106.39896 * 23.52148 * 12 11 2 14 14 O 1.42098 * 106.40346 * 156.43664 * 12 11 2 15 15 C 1.76196 * 107.22074 * 269.97934 * 12 11 2 16 16 C 1.38633 * 119.74894 * 269.72368 * 15 12 11 17 17 C 1.37619 * 120.24451 * 179.72010 * 16 15 12 18 18 C 1.40714 * 119.74577 * 0.52958 * 17 16 15 19 19 C 1.41404 * 120.23977 * 179.72225 * 18 17 16 20 20 H 1.07997 * 120.00136 * 24.40995 * 19 18 17 21 21 C 1.39946 * 119.99691 * 204.39951 * 19 18 17 22 22 N 1.30832 * 119.99939 * 17.85359 * 21 19 18 23 23 Si 1.86794 * 120.00021 * 197.85424 * 21 19 18 24 24 H 1.48497 * 109.47314 * 90.00035 * 23 21 19 25 25 H 1.48499 * 109.47064 * 210.00446 * 23 21 19 26 26 H 1.48500 * 109.47125 * 330.00287 * 23 21 19 27 27 C 1.40710 * 119.51255 * 359.74865 * 18 17 16 28 28 C 1.37620 * 119.74461 * 359.97438 * 27 18 17 29 29 H 1.08997 * 109.47534 * 299.72037 * 1 2 3 30 30 H 1.09000 * 109.46638 * 59.71909 * 1 2 3 31 31 H 1.09003 * 109.47079 * 179.71341 * 1 2 3 32 32 H 1.08991 * 109.47273 * 295.00906 * 6 4 2 33 33 H 1.09003 * 109.46345 * 55.00375 * 6 4 2 34 34 H 0.96702 * 113.99666 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.49911 * 178.63047 * 8 4 2 36 36 H 1.08995 * 109.45174 * 58.65521 * 8 4 2 37 37 H 1.08998 * 109.49879 * 301.38444 * 9 8 4 38 38 H 1.09000 * 109.49726 * 181.31780 * 9 8 4 39 39 H 1.09000 * 109.58240 * 65.13355 * 10 9 8 40 40 H 1.08996 * 109.58710 * 185.55766 * 10 9 8 41 41 H 1.07997 * 119.87498 * 359.97438 * 16 15 12 42 42 H 1.08002 * 120.12283 * 180.27720 * 17 16 15 43 43 H 0.96999 * 119.99435 * 179.97438 * 22 21 19 44 44 H 1.08001 * 120.12449 * 180.02562 * 27 18 17 45 45 H 1.08003 * 119.87486 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2444 5 1 3.1297 -0.6520 -1.2904 6 6 1.4322 -0.0991 -2.4966 7 8 1.9996 -0.7033 -3.6605 8 6 1.6416 -2.2063 -1.1676 9 6 2.2801 -2.8462 0.0672 10 6 1.7692 -2.1393 1.3265 11 7 2.0225 -0.6979 1.1954 12 16 2.8471 0.1242 2.3728 13 8 2.4594 1.4865 2.2573 14 8 2.6954 -0.6281 3.5687 15 6 4.5576 0.0565 1.9559 16 6 5.3403 -0.9852 2.4293 17 6 6.6762 -1.0512 2.1052 18 6 7.2494 -0.0503 1.2993 19 6 8.6222 -0.1047 0.9647 20 1 9.1417 -1.0515 0.9681 21 6 9.3075 1.0684 0.6289 22 7 8.8070 2.2334 0.9512 23 14 10.9368 0.9707 -0.2794 24 1 10.6894 0.9915 -1.7435 25 1 11.7833 2.1316 0.0962 26 1 11.6332 -0.2887 0.0870 27 6 6.4466 1.0054 0.8292 28 6 5.1117 1.0481 1.1611 29 1 -0.3634 0.5095 0.8924 30 1 -0.3632 0.5182 -0.8875 31 1 -0.3633 -1.0277 -0.0051 32 1 0.3538 -0.2575 -2.4938 33 1 1.6423 0.9705 -2.5033 34 1 1.6575 -0.3504 -4.4933 35 1 1.9846 -2.7240 -2.0634 36 1 0.5567 -2.2836 -1.0969 37 1 3.3640 -2.7473 0.0089 38 1 2.0128 -3.9022 0.1090 39 1 0.6987 -2.3138 1.4346 40 1 2.2943 -2.5247 2.2004 41 1 4.8992 -1.7498 3.0514 42 1 7.2831 -1.8661 2.4715 43 1 9.2823 3.0464 0.7188 44 1 6.8762 1.7787 0.2096 45 1 4.4935 1.8572 0.8012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647226086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:01 Heat of formation + Delta-G solvation = -144.031468 kcal Electronic energy + Delta-G solvation = -28716.140194 eV Core-core repulsion = 24823.444855 eV Total energy + Delta-G solvation = -3892.695339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.39879 -39.40042 -38.24698 -37.42019 -36.81589 -35.82508 -33.61711 -33.34686 -32.09121 -31.32040 -28.88006 -27.63165 -26.72789 -24.28225 -23.35928 -22.98850 -22.94588 -20.59526 -19.47780 -19.37067 -18.74899 -18.40310 -18.18521 -17.23743 -16.78270 -16.20816 -15.87253 -15.77988 -15.45870 -15.31914 -15.16853 -15.01160 -14.47799 -14.24615 -14.11851 -13.99260 -13.90405 -13.57452 -13.36740 -13.15589 -13.11233 -13.05290 -12.97893 -12.91154 -12.62056 -12.59404 -12.32622 -12.09106 -12.01273 -11.77323 -11.56860 -11.37217 -11.27776 -11.21981 -11.18648 -10.71301 -9.93409 -9.75243 -9.57535 -8.89044 -6.67052 -0.37508 0.46671 1.02828 1.33738 1.41698 1.49522 2.08892 2.13178 2.50458 2.90679 3.29822 3.48145 3.53837 3.64099 3.89381 4.06209 4.19279 4.24723 4.26156 4.28315 4.30183 4.45458 4.50429 4.54399 4.63676 4.80138 4.83621 4.85973 4.88869 4.92734 5.01178 5.07355 5.10659 5.17098 5.21874 5.26758 5.37419 5.46534 5.49441 5.56687 5.59836 5.70079 5.79716 5.91272 6.12991 6.46593 6.66015 6.78742 6.98932 8.06381 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.004043 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.378844 B = 6923.417934 C = 7952.455111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 H 0.081 0.919 4 C -0.099 4.099 5 H 0.049 0.951 6 C 0.083 3.917 7 O -0.592 6.592 8 C -0.098 4.098 9 C -0.134 4.134 10 C 0.116 3.884 11 N -0.990 5.990 12 S 2.715 3.285 13 O -1.001 7.001 14 O -0.997 6.997 15 C -0.797 4.797 16 C -0.001 4.001 17 C -0.256 4.256 18 C 0.112 3.888 19 C -0.467 4.467 20 H 0.092 0.908 21 C 0.034 3.966 22 N -0.800 5.800 23 Si 0.993 3.007 24 H -0.259 1.259 25 H -0.264 1.264 26 H -0.252 1.252 27 C -0.207 4.207 28 C -0.020 4.020 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.396 0.604 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.298 0.702 44 H 0.110 0.890 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.750 -5.747 -8.608 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.099 0.901 4 C -0.120 4.120 5 H 0.067 0.933 6 C 0.004 3.996 7 O -0.400 6.400 8 C -0.136 4.136 9 C -0.173 4.173 10 C -0.009 4.009 11 N -0.828 5.828 12 S 2.813 3.187 13 O -0.991 6.991 14 O -0.988 6.988 15 C -0.890 4.890 16 C -0.021 4.021 17 C -0.276 4.276 18 C 0.108 3.892 19 C -0.494 4.494 20 H 0.110 0.890 21 C -0.186 4.186 22 N -0.423 5.423 23 Si 0.812 3.188 24 H -0.183 1.183 25 H -0.188 1.188 26 H -0.176 1.176 27 C -0.227 4.227 28 C -0.040 4.040 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.246 0.754 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.109 0.891 44 H 0.128 0.872 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.795 -5.408 -7.376 16.551 hybrid contribution 1.526 0.585 -0.821 1.829 sum -12.269 -4.822 -8.197 15.523 Atomic orbital electron populations 1.22244 0.92427 1.03979 1.03265 1.20967 0.96401 0.94998 0.83166 0.90138 1.21465 1.00035 0.97332 0.93127 0.93252 1.22254 0.97424 0.95618 0.84258 1.86450 1.69936 1.66422 1.17226 1.21432 1.01437 0.93286 0.97427 1.21928 1.00163 1.00599 0.94619 1.21627 1.02746 0.77648 0.98850 1.57740 1.70216 1.18956 1.35859 1.00619 0.73284 0.72060 0.72758 1.93441 1.83328 1.35361 1.87019 1.93441 1.87198 1.72993 1.45153 1.29757 1.23922 1.09445 1.25860 1.20416 0.93730 0.94287 0.93664 1.21250 0.95867 1.03637 1.06887 1.18195 0.93766 0.90650 0.86585 1.20234 0.94630 0.95804 1.38694 0.88975 1.27053 1.04308 0.93710 0.93480 1.69871 1.40040 1.00183 1.32180 0.85026 0.75239 0.79769 0.78754 1.18297 1.18836 1.17568 1.21341 0.93115 1.02209 1.06014 1.20392 0.95310 0.94656 0.93627 0.92703 0.89075 0.89993 0.90355 0.93376 0.75429 0.91769 0.89455 0.93677 0.88466 0.88447 0.90091 0.85824 0.87059 0.89050 0.87239 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 8.51 71.98 0.61 -2.31 16 2 C 0.15 3.86 2.74 44.97 0.12 3.99 16 3 H 0.08 2.33 7.12 -2.38 -0.02 2.32 16 4 C -0.10 -2.42 2.35 -10.69 -0.03 -2.45 16 5 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 6 C 0.08 1.54 5.77 71.98 0.42 1.96 16 7 O -0.59 -11.96 13.18 -148.98 -1.96 -13.93 16 8 C -0.10 -2.03 4.88 30.64 0.15 -1.88 16 9 C -0.13 -2.99 6.08 30.67 0.19 -2.81 16 10 C 0.12 2.80 5.96 86.36 0.52 3.31 16 11 N -0.99 -29.52 3.00 -490.76 -1.47 -30.99 16 12 S 2.72 106.85 5.68 -56.49 -0.32 106.52 16 13 O -1.00 -43.34 15.97 -128.00 -2.04 -45.38 16 14 O -1.00 -42.03 15.97 -128.00 -2.04 -44.07 16 15 C -0.80 -36.42 6.00 22.46 0.13 -36.29 16 16 C 0.00 -0.06 9.49 22.22 0.21 0.15 16 17 C -0.26 -12.63 9.80 22.73 0.22 -12.41 16 18 C 0.11 5.96 5.58 -21.29 -0.12 5.84 16 19 C -0.47 -23.92 9.05 23.46 0.21 -23.71 16 20 H 0.09 4.44 7.91 -2.91 -0.02 4.42 16 21 C 0.03 1.60 5.14 85.26 0.44 2.04 16 22 N -0.80 -39.98 10.95 21.83 0.24 -39.74 16 23 Si 0.99 35.36 29.59 68.60 2.03 37.39 16 24 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 25 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 26 H -0.25 -8.66 7.11 99.48 0.71 -7.96 16 27 C -0.21 -10.98 8.70 22.73 0.20 -10.78 16 28 C -0.02 -0.97 9.49 22.22 0.21 -0.76 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.20 6.52 -2.39 -0.02 1.19 16 31 H 0.08 1.20 5.72 -2.39 -0.01 1.19 16 32 H 0.08 1.01 6.68 -2.39 -0.02 0.99 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.40 4.06 9.12 -74.06 -0.68 3.38 16 35 H 0.06 1.41 7.80 -2.39 -0.02 1.39 16 36 H 0.09 1.36 6.49 -2.39 -0.02 1.34 16 37 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.10 1.78 7.50 -2.39 -0.02 1.77 16 40 H 0.08 2.10 7.13 -2.39 -0.02 2.09 16 41 H 0.12 5.03 7.59 -2.91 -0.02 5.00 16 42 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 43 H 0.30 13.25 8.30 -92.71 -0.77 12.48 16 44 H 0.11 5.95 6.16 -2.91 -0.02 5.93 16 45 H 0.11 5.01 7.60 -2.91 -0.02 4.99 16 Total: -1.00 -69.09 365.60 -1.75 -70.84 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: 0.34 Total: 35.46 kcal Atomic # 6 Polarization: -79.59 SS G_CDS: 3.49 Total: -76.11 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -1.23 Total: -70.73 kcal Atomic # 8 Polarization: -97.33 SS G_CDS: -6.05 Total: -103.38 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Atomic # 16 Polarization: 106.85 SS G_CDS: -0.32 Total: 106.52 kcal Total: -69.09 -1.75 -70.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647226086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.187 kcal (2) G-P(sol) polarization free energy of solvation -69.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds