Wall clock time and date at job start Tue Mar 31 2020 23:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.70280 * 2 1 4 4 C 1.52764 * 109.50801 * 239.88286 * 2 1 3 5 5 H 1.08994 * 109.36038 * 305.61695 * 4 2 1 6 6 C 1.53002 * 109.58992 * 65.65225 * 4 2 1 7 7 O 1.42902 * 109.46669 * 184.97965 * 6 4 2 8 8 C 1.53045 * 109.38264 * 185.70561 * 4 2 1 9 9 C 1.53039 * 109.54068 * 61.23829 * 8 4 2 10 10 C 1.53192 * 109.31283 * 298.63707 * 9 8 4 11 11 N 1.46924 * 109.58642 * 120.35757 * 2 1 3 12 12 S 1.65593 * 120.63264 * 353.41625 * 11 2 1 13 13 O 1.42107 * 106.40393 * 160.93654 * 12 11 2 14 14 O 1.42097 * 106.40396 * 28.01542 * 12 11 2 15 15 C 1.76203 * 107.22064 * 274.47559 * 12 11 2 16 16 C 1.38633 * 119.75097 * 89.99535 * 15 12 11 17 17 C 1.37615 * 120.25440 * 179.97438 * 16 15 12 18 18 C 1.40722 * 119.73975 * 0.02562 * 17 16 15 19 19 C 1.41390 * 120.24323 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99844 * 25.80986 * 19 18 17 21 21 C 1.39946 * 120.00081 * 205.81166 * 19 18 17 22 22 N 1.30826 * 119.99978 * 207.98165 * 21 19 18 23 23 Si 1.86795 * 120.00167 * 27.97955 * 21 19 18 24 24 H 1.48505 * 109.47137 * 264.78391 * 23 21 19 25 25 H 1.48501 * 109.47243 * 144.78134 * 23 21 19 26 26 H 1.48499 * 109.47025 * 24.78308 * 23 21 19 27 27 C 1.40716 * 119.50984 * 0.27282 * 18 17 16 28 28 C 1.37610 * 119.74838 * 359.44647 * 27 18 17 29 29 H 1.08995 * 109.47153 * 290.15422 * 1 2 3 30 30 H 1.08997 * 109.47381 * 50.15757 * 1 2 3 31 31 H 1.08998 * 109.46987 * 170.16165 * 1 2 3 32 32 H 1.08998 * 109.47287 * 304.97905 * 6 4 2 33 33 H 1.08999 * 109.46868 * 64.98614 * 6 4 2 34 34 H 0.96708 * 113.99279 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.45476 * 301.21836 * 8 4 2 36 36 H 1.08999 * 109.46019 * 181.26232 * 8 4 2 37 37 H 1.08992 * 109.49932 * 178.68438 * 9 8 4 38 38 H 1.09007 * 109.49384 * 58.58234 * 9 8 4 39 39 H 1.08994 * 109.58875 * 294.84643 * 10 9 8 40 40 H 1.09000 * 109.58761 * 174.41837 * 10 9 8 41 41 H 1.08003 * 119.87356 * 0.02562 * 16 15 12 42 42 H 1.07994 * 120.13187 * 179.97438 * 17 16 15 43 43 H 0.97004 * 119.99752 * 5.12008 * 22 21 19 44 44 H 1.08010 * 120.12059 * 179.72616 * 27 18 17 45 45 H 1.08006 * 119.88076 * 180.27666 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7225 -1.2456 5 1 1.5963 -1.7168 -1.2937 6 6 1.6513 0.0712 -2.4944 7 8 2.0270 -0.6629 -3.6615 8 6 3.5639 -0.8462 -1.1727 9 6 3.9524 -1.6686 0.0580 10 6 3.4646 -0.9519 1.3210 11 7 2.0225 -0.6996 1.1944 12 16 0.9718 -1.2002 2.3724 13 8 1.6552 -2.1942 3.1237 14 8 -0.2729 -1.4323 1.7275 15 6 0.7216 0.1622 3.4614 16 6 -0.3045 1.0610 3.2143 17 6 -0.5096 2.1284 4.0584 18 6 0.3274 2.3058 5.1756 19 6 0.1266 3.3990 6.0495 20 1 -0.8522 3.8467 6.1381 21 6 1.1962 3.9008 6.7996 22 7 0.9722 4.4849 7.9486 23 14 2.9436 3.7369 6.1602 24 1 3.5722 2.5241 6.7429 25 1 3.7278 4.9364 6.5493 26 1 2.9202 3.6197 4.6800 27 6 1.3697 1.3907 5.4130 28 6 1.5526 0.3274 4.5588 29 1 -0.3633 0.3541 0.9647 30 1 -0.3634 0.6584 -0.7890 31 1 -0.3633 -1.0125 -0.1756 32 1 0.5738 0.2355 -2.4997 33 1 2.1654 1.0324 -2.4887 34 1 1.8105 -0.2182 -4.4925 35 1 4.0057 0.1476 -1.0997 36 1 3.9314 -1.3416 -2.0714 37 1 5.0363 -1.7760 0.0965 38 1 3.4905 -2.6541 -0.0023 39 1 3.9929 -0.0049 1.4309 40 1 3.6505 -1.5798 2.1924 41 1 -0.9460 0.9226 2.3565 42 1 -1.3093 2.8276 3.8638 43 1 0.0746 4.5044 8.3159 44 1 2.0209 1.5199 6.2650 45 1 2.3492 -0.3787 4.7415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647226088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:06 Heat of formation + Delta-G solvation = -109.051311 kcal Electronic energy + Delta-G solvation = -28672.757536 eV Core-core repulsion = 24781.579050 eV Total energy + Delta-G solvation = -3891.178485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.34610 -37.86171 -36.92492 -36.64532 -35.26018 -34.17811 -32.82909 -32.55695 -30.70311 -29.91666 -27.62569 -25.81383 -25.46378 -23.27150 -21.89441 -21.60803 -20.95356 -20.25706 -18.74442 -18.30780 -17.64856 -17.04615 -16.70171 -15.85986 -15.27698 -14.89421 -14.72258 -14.46656 -14.39753 -14.30912 -14.03069 -13.80732 -13.30020 -13.24031 -12.88322 -12.74041 -12.64012 -12.47464 -12.23651 -11.81926 -11.74040 -11.56588 -11.55161 -11.25388 -11.13719 -11.05271 -10.94205 -10.70066 -10.55282 -10.47602 -10.42357 -10.02650 -9.86061 -9.79596 -9.67986 -9.32907 -8.75483 -8.19441 -7.98694 -7.75481 -5.00028 1.07995 2.07251 2.57556 3.00880 3.11823 3.34233 3.45765 3.75943 4.03084 4.09458 4.41901 4.57866 4.69422 4.86383 4.97033 4.98964 5.11086 5.12207 5.24889 5.31224 5.36275 5.41122 5.61767 5.63812 5.72276 5.77811 5.82867 5.86439 5.90733 6.04240 6.10359 6.21014 6.30345 6.36076 6.37642 6.49939 6.67517 6.76911 6.87723 7.04339 7.12243 7.17952 7.28754 7.42428 7.50370 7.67941 8.05491 8.22150 8.38468 9.52026 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016509 B = 0.003631 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.603904 B = 7710.436693 C = 7833.297386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.164 3.836 3 H 0.073 0.927 4 C -0.096 4.096 5 H 0.082 0.918 6 C 0.080 3.920 7 O -0.573 6.573 8 C -0.108 4.108 9 C -0.132 4.132 10 C 0.116 3.884 11 N -0.999 5.999 12 S 2.691 3.309 13 O -0.983 6.983 14 O -0.976 6.976 15 C -0.797 4.797 16 C 0.003 3.997 17 C -0.230 4.230 18 C 0.119 3.881 19 C -0.486 4.486 20 H 0.087 0.913 21 C 0.046 3.954 22 N -0.776 5.776 23 Si 1.067 2.933 24 H -0.269 1.269 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.258 4.258 28 C 0.017 3.983 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.377 0.623 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.295 0.705 44 H 0.108 0.892 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -4.281 -15.993 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.057 3.943 3 H 0.091 0.909 4 C -0.116 4.116 5 H 0.101 0.899 6 C 0.002 3.998 7 O -0.378 6.378 8 C -0.146 4.146 9 C -0.171 4.171 10 C -0.009 4.009 11 N -0.834 5.834 12 S 2.792 3.208 13 O -0.974 6.974 14 O -0.967 6.967 15 C -0.892 4.892 16 C -0.017 4.017 17 C -0.250 4.250 18 C 0.115 3.885 19 C -0.512 4.512 20 H 0.105 0.895 21 C -0.179 4.179 22 N -0.395 5.395 23 Si 0.890 3.110 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.184 1.184 27 C -0.278 4.278 28 C -0.003 4.003 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.223 0.777 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.106 0.894 44 H 0.126 0.874 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.149 -5.101 -15.055 17.044 hybrid contribution -1.904 0.931 -0.221 2.131 sum 4.245 -4.171 -15.276 16.395 Atomic orbital electron populations 1.22938 0.92675 1.04983 1.03793 1.20710 0.94656 0.95313 0.83598 0.90858 1.21464 0.97015 1.00620 0.92520 0.89936 1.22231 0.98649 0.93847 0.85095 1.86470 1.85659 1.49560 1.16099 1.21474 0.94648 1.00386 0.98055 1.21886 1.00868 0.99533 0.94786 1.21423 0.80027 1.00474 0.98966 1.57930 1.17864 1.74326 1.33304 1.01423 0.72613 0.74442 0.72306 1.93456 1.75228 1.57396 1.71307 1.93594 1.42829 1.85819 1.74427 1.29304 1.14404 1.26799 1.18665 1.20318 0.92938 0.91702 0.96727 1.21031 1.04999 1.00899 0.98057 1.17876 0.89934 0.91203 0.89459 1.20997 0.98848 1.12911 1.18410 0.89532 1.27574 1.07233 0.90932 0.92141 1.70539 1.27222 1.28648 1.13080 0.83691 0.72005 0.77094 0.78213 1.19516 1.20857 1.18431 1.21075 1.04820 0.98742 1.03123 1.20202 0.94141 0.94645 0.91284 0.90056 0.92200 0.88899 0.92941 0.93519 0.77654 0.92016 0.91199 0.90857 0.91552 0.91476 0.88765 0.87064 0.87926 0.89375 0.87402 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 7.06 37.16 0.26 -2.30 16 2 C 0.16 2.13 2.96 -67.82 -0.20 1.93 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.10 -1.10 2.02 -90.72 -0.18 -1.29 16 5 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 6 C 0.08 0.75 6.31 37.16 0.23 0.98 16 7 O -0.57 -5.36 13.17 -35.23 -0.46 -5.83 16 8 C -0.11 -1.15 5.08 -26.69 -0.14 -1.28 16 9 C -0.13 -1.44 6.08 -26.61 -0.16 -1.60 16 10 C 0.12 1.51 6.50 -3.70 -0.02 1.49 16 11 N -1.00 -14.96 3.30 -106.70 -0.35 -15.31 16 12 S 2.69 49.88 5.29 -107.50 -0.57 49.31 16 13 O -0.98 -20.23 15.74 -57.17 -0.90 -21.13 16 14 O -0.98 -18.87 12.39 -57.17 -0.71 -19.57 16 15 C -0.80 -16.61 5.99 -39.29 -0.24 -16.85 16 16 C 0.00 0.06 8.93 -39.66 -0.35 -0.30 16 17 C -0.23 -5.18 9.80 -38.87 -0.38 -5.56 16 18 C 0.12 2.89 5.14 -106.82 -0.55 2.34 16 19 C -0.49 -12.04 9.36 -37.74 -0.35 -12.40 16 20 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 21 C 0.05 1.11 5.26 -17.34 -0.09 1.02 16 22 N -0.78 -18.92 13.65 55.55 0.76 -18.16 16 23 Si 1.07 22.16 25.29 -169.99 -4.30 17.87 16 24 H -0.27 -5.35 6.60 56.52 0.37 -4.98 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 27 C -0.26 -6.02 7.51 -38.88 -0.29 -6.31 16 28 C 0.02 0.38 9.49 -39.66 -0.38 0.00 16 29 H 0.08 1.27 3.03 -51.93 -0.16 1.11 16 30 H 0.06 0.65 6.99 -51.93 -0.36 0.29 16 31 H 0.09 1.38 6.59 -51.93 -0.34 1.04 16 32 H 0.05 0.45 6.61 -51.93 -0.34 0.11 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.38 1.79 9.12 45.56 0.42 2.20 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.27 6.81 -51.93 -0.35 0.92 16 41 H 0.11 2.05 5.49 -52.48 -0.29 1.77 16 42 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 43 H 0.29 6.93 8.73 -40.82 -0.36 6.57 16 44 H 0.11 2.45 4.88 -52.48 -0.26 2.19 16 45 H 0.11 2.13 7.60 -52.48 -0.40 1.73 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -29.29 353.81 -9.52 -38.81 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.47 Total: 8.80 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: -2.84 Total: -40.12 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.41 Total: -33.47 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -2.07 Total: -46.53 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.30 Total: 17.87 kcal Atomic # 16 Polarization: 49.88 SS G_CDS: -0.57 Total: 49.31 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.29 -9.52 -38.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647226088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.244 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds