Wall clock time and date at job start Tue Mar 31 2020 23:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.70280 * 2 1 4 4 C 1.52764 * 109.50801 * 239.88286 * 2 1 3 5 5 H 1.08994 * 109.36038 * 305.61695 * 4 2 1 6 6 C 1.53002 * 109.58992 * 65.65225 * 4 2 1 7 7 O 1.42902 * 109.46669 * 184.97965 * 6 4 2 8 8 C 1.53045 * 109.38264 * 185.70561 * 4 2 1 9 9 C 1.53039 * 109.54068 * 61.23829 * 8 4 2 10 10 C 1.53192 * 109.31283 * 298.63707 * 9 8 4 11 11 N 1.46924 * 109.58642 * 120.35757 * 2 1 3 12 12 S 1.65593 * 120.63264 * 353.41625 * 11 2 1 13 13 O 1.42107 * 106.40393 * 160.93654 * 12 11 2 14 14 O 1.42097 * 106.40396 * 28.01542 * 12 11 2 15 15 C 1.76203 * 107.22064 * 274.47559 * 12 11 2 16 16 C 1.38633 * 119.75097 * 89.99535 * 15 12 11 17 17 C 1.37615 * 120.25440 * 179.97438 * 16 15 12 18 18 C 1.40722 * 119.73975 * 0.02562 * 17 16 15 19 19 C 1.41390 * 120.24323 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99844 * 25.80986 * 19 18 17 21 21 C 1.39946 * 120.00081 * 205.81166 * 19 18 17 22 22 N 1.30826 * 119.99978 * 207.98165 * 21 19 18 23 23 Si 1.86795 * 120.00167 * 27.97955 * 21 19 18 24 24 H 1.48505 * 109.47137 * 264.78391 * 23 21 19 25 25 H 1.48501 * 109.47243 * 144.78134 * 23 21 19 26 26 H 1.48499 * 109.47025 * 24.78308 * 23 21 19 27 27 C 1.40716 * 119.50984 * 0.27282 * 18 17 16 28 28 C 1.37610 * 119.74838 * 359.44647 * 27 18 17 29 29 H 1.08995 * 109.47153 * 290.15422 * 1 2 3 30 30 H 1.08997 * 109.47381 * 50.15757 * 1 2 3 31 31 H 1.08998 * 109.46987 * 170.16165 * 1 2 3 32 32 H 1.08998 * 109.47287 * 304.97905 * 6 4 2 33 33 H 1.08999 * 109.46868 * 64.98614 * 6 4 2 34 34 H 0.96708 * 113.99279 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.45476 * 301.21836 * 8 4 2 36 36 H 1.08999 * 109.46019 * 181.26232 * 8 4 2 37 37 H 1.08992 * 109.49932 * 178.68438 * 9 8 4 38 38 H 1.09007 * 109.49384 * 58.58234 * 9 8 4 39 39 H 1.08994 * 109.58875 * 294.84643 * 10 9 8 40 40 H 1.09000 * 109.58761 * 174.41837 * 10 9 8 41 41 H 1.08003 * 119.87356 * 0.02562 * 16 15 12 42 42 H 1.07994 * 120.13187 * 179.97438 * 17 16 15 43 43 H 0.97004 * 119.99752 * 5.12008 * 22 21 19 44 44 H 1.08010 * 120.12059 * 179.72616 * 27 18 17 45 45 H 1.08006 * 119.88076 * 180.27666 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7225 -1.2456 5 1 1.5963 -1.7168 -1.2937 6 6 1.6513 0.0712 -2.4944 7 8 2.0270 -0.6629 -3.6615 8 6 3.5639 -0.8462 -1.1727 9 6 3.9524 -1.6686 0.0580 10 6 3.4646 -0.9519 1.3210 11 7 2.0225 -0.6996 1.1944 12 16 0.9718 -1.2002 2.3724 13 8 1.6552 -2.1942 3.1237 14 8 -0.2729 -1.4323 1.7275 15 6 0.7216 0.1622 3.4614 16 6 -0.3045 1.0610 3.2143 17 6 -0.5096 2.1284 4.0584 18 6 0.3274 2.3058 5.1756 19 6 0.1266 3.3990 6.0495 20 1 -0.8522 3.8467 6.1381 21 6 1.1962 3.9008 6.7996 22 7 0.9722 4.4849 7.9486 23 14 2.9436 3.7369 6.1602 24 1 3.5722 2.5241 6.7429 25 1 3.7278 4.9364 6.5493 26 1 2.9202 3.6197 4.6800 27 6 1.3697 1.3907 5.4130 28 6 1.5526 0.3274 4.5588 29 1 -0.3633 0.3541 0.9647 30 1 -0.3634 0.6584 -0.7890 31 1 -0.3633 -1.0125 -0.1756 32 1 0.5738 0.2355 -2.4997 33 1 2.1654 1.0324 -2.4887 34 1 1.8105 -0.2182 -4.4925 35 1 4.0057 0.1476 -1.0997 36 1 3.9314 -1.3416 -2.0714 37 1 5.0363 -1.7760 0.0965 38 1 3.4905 -2.6541 -0.0023 39 1 3.9929 -0.0049 1.4309 40 1 3.6505 -1.5798 2.1924 41 1 -0.9460 0.9226 2.3565 42 1 -1.3093 2.8276 3.8638 43 1 0.0746 4.5044 8.3159 44 1 2.0209 1.5199 6.2650 45 1 2.3492 -0.3787 4.7415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647226088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:05 Heat of formation + Delta-G solvation = -129.660905 kcal Electronic energy + Delta-G solvation = -28673.651235 eV Core-core repulsion = 24781.579050 eV Total energy + Delta-G solvation = -3892.072184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.30122 -39.62312 -38.42610 -37.40061 -36.81060 -35.96299 -33.82376 -33.53092 -32.47076 -31.66119 -28.61471 -27.24844 -26.67342 -24.31245 -23.63085 -22.73850 -22.49095 -21.20104 -20.43187 -19.83890 -18.75399 -18.19893 -18.00399 -17.11744 -16.49251 -16.40561 -15.98269 -15.96494 -15.73315 -15.31056 -15.23330 -15.10913 -14.73648 -14.47858 -14.32238 -14.11264 -13.96697 -13.54396 -13.38334 -13.35701 -13.31315 -13.12730 -12.84055 -12.77184 -12.46076 -12.22133 -12.18178 -12.02441 -11.86025 -11.66409 -11.44776 -11.43433 -11.32666 -11.08291 -10.99755 -10.70125 -10.06077 -9.83126 -9.73048 -9.59699 -6.86636 -0.39601 0.32433 0.79697 1.33853 1.45651 1.72051 2.06824 2.09553 2.37509 2.90256 3.25125 3.30790 3.55299 3.60768 3.82145 4.00831 4.09438 4.12582 4.15398 4.25082 4.35818 4.44374 4.53233 4.58328 4.60304 4.72807 4.76331 4.82699 4.86962 4.88378 4.95900 5.03962 5.09669 5.18261 5.20430 5.32288 5.32817 5.35063 5.38001 5.49148 5.49415 5.59989 5.68236 5.79073 5.90765 6.21563 6.42977 6.57737 6.98904 7.68588 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016509 B = 0.003631 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.603904 B = 7710.436693 C = 7833.297386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.159 3.841 3 H 0.090 0.910 4 C -0.095 4.095 5 H 0.063 0.937 6 C 0.083 3.917 7 O -0.590 6.590 8 C -0.104 4.104 9 C -0.128 4.128 10 C 0.106 3.894 11 N -0.994 5.994 12 S 2.712 3.288 13 O -1.003 7.003 14 O -0.984 6.984 15 C -0.797 4.797 16 C 0.006 3.994 17 C -0.247 4.247 18 C 0.106 3.894 19 C -0.521 4.521 20 H 0.066 0.934 21 C 0.023 3.977 22 N -0.798 5.798 23 Si 1.091 2.909 24 H -0.255 1.255 25 H -0.268 1.268 26 H -0.260 1.260 27 C -0.273 4.273 28 C 0.011 3.989 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.397 0.603 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.137 0.863 42 H 0.110 0.890 43 H 0.289 0.711 44 H 0.110 0.890 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.486 -4.952 -18.798 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.054 3.946 3 H 0.108 0.892 4 C -0.116 4.116 5 H 0.082 0.918 6 C 0.004 3.996 7 O -0.398 6.398 8 C -0.142 4.142 9 C -0.168 4.168 10 C -0.018 4.018 11 N -0.832 5.832 12 S 2.810 3.190 13 O -0.993 6.993 14 O -0.975 6.975 15 C -0.889 4.889 16 C -0.013 4.013 17 C -0.267 4.267 18 C 0.103 3.897 19 C -0.548 4.548 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.418 5.418 23 Si 0.910 3.090 24 H -0.180 1.180 25 H -0.194 1.194 26 H -0.184 1.184 27 C -0.293 4.293 28 C -0.009 4.009 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.247 0.753 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.155 0.845 42 H 0.128 0.872 43 H 0.100 0.900 44 H 0.128 0.872 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.797 -5.742 -17.835 20.294 hybrid contribution -2.477 0.943 0.402 2.681 sum 5.320 -4.799 -17.433 18.848 Atomic orbital electron populations 1.22914 0.93330 1.04745 1.03731 1.20934 0.94226 0.96152 0.83300 0.89162 1.21421 0.97564 0.99775 0.92812 0.91800 1.22172 0.99238 0.93881 0.84273 1.86412 1.85848 1.50431 1.17129 1.21460 0.93944 1.00995 0.97793 1.21890 1.02222 0.98733 0.93909 1.21705 0.78677 1.01607 0.99843 1.57671 1.18446 1.74439 1.32668 1.00860 0.72616 0.73397 0.72123 1.93430 1.75647 1.57842 1.72421 1.93604 1.43988 1.85714 1.74168 1.29923 1.13342 1.26682 1.18904 1.20647 0.92942 0.90832 0.96917 1.21260 1.05344 1.02039 0.98104 1.18082 0.90674 0.91140 0.89828 1.20936 0.98564 1.14568 1.20714 0.91624 1.28461 1.09456 0.90092 0.91738 1.70588 1.26941 1.30491 1.13773 0.83413 0.69509 0.78218 0.77906 1.18019 1.19392 1.18392 1.21223 1.04988 0.99293 1.03780 1.20514 0.94797 0.94459 0.91138 0.92013 0.89172 0.90341 0.92316 0.91863 0.75338 0.90735 0.90949 0.88465 0.92624 0.89700 0.89551 0.84531 0.87169 0.89958 0.87180 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.73 7.06 71.98 0.51 -4.22 16 2 C 0.16 3.67 2.96 44.83 0.13 3.80 16 3 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 4 C -0.10 -1.90 2.02 -10.86 -0.02 -1.93 16 5 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 6 C 0.08 1.25 6.31 71.98 0.45 1.71 16 7 O -0.59 -9.16 13.17 -148.98 -1.96 -11.12 16 8 C -0.10 -1.85 5.08 30.62 0.16 -1.69 16 9 C -0.13 -2.42 6.08 30.67 0.19 -2.24 16 10 C 0.11 2.45 6.50 86.36 0.56 3.01 16 11 N -0.99 -27.28 3.30 -491.49 -1.62 -28.90 16 12 S 2.71 95.75 5.29 -56.49 -0.30 95.45 16 13 O -1.00 -39.70 15.74 -128.00 -2.01 -41.72 16 14 O -0.98 -36.51 12.39 -128.00 -1.59 -38.10 16 15 C -0.80 -32.01 5.99 22.46 0.13 -31.87 16 16 C 0.01 0.24 8.93 22.22 0.20 0.44 16 17 C -0.25 -11.16 9.80 22.73 0.22 -10.94 16 18 C 0.11 5.22 5.14 -21.29 -0.11 5.11 16 19 C -0.52 -26.86 9.36 23.46 0.22 -26.64 16 20 H 0.07 3.52 8.06 -2.91 -0.02 3.50 16 21 C 0.02 1.14 5.26 85.26 0.45 1.59 16 22 N -0.80 -40.12 13.65 21.83 0.30 -39.83 16 23 Si 1.09 44.29 25.29 68.60 1.73 46.03 16 24 H -0.26 -9.69 6.60 99.48 0.66 -9.03 16 25 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 26 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 27 C -0.27 -12.67 7.51 22.73 0.17 -12.50 16 28 C 0.01 0.45 9.49 22.22 0.21 0.66 16 29 H 0.06 1.78 3.03 -2.39 -0.01 1.77 16 30 H 0.09 1.67 6.99 -2.39 -0.02 1.65 16 31 H 0.08 2.19 6.59 -2.39 -0.02 2.18 16 32 H 0.06 0.81 6.61 -2.39 -0.02 0.79 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.40 2.47 9.12 -74.05 -0.68 1.80 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.28 7.79 -2.39 -0.02 1.26 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 2.14 6.81 -2.39 -0.02 2.13 16 41 H 0.14 4.80 5.49 -2.91 -0.02 4.78 16 42 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 43 H 0.29 14.29 8.73 -92.71 -0.81 13.48 16 44 H 0.11 4.97 4.88 -2.91 -0.01 4.96 16 45 H 0.13 4.82 7.60 -2.91 -0.02 4.80 16 Total: -1.00 -63.30 353.81 -1.72 -65.01 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.26 Total: 28.89 kcal Atomic # 6 Polarization: -79.19 SS G_CDS: 3.47 Total: -75.71 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -1.32 Total: -68.72 kcal Atomic # 8 Polarization: -85.38 SS G_CDS: -5.56 Total: -90.94 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.73 Total: 46.03 kcal Atomic # 16 Polarization: 95.75 SS G_CDS: -0.30 Total: 95.45 kcal Total: -63.30 -1.72 -65.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647226088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.648 kcal (2) G-P(sol) polarization free energy of solvation -63.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds