Wall clock time and date at job start Tue Mar 31 2020 23:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09001 * 109.87789 * 2 1 4 4 O 1.43744 * 110.00629 * 121.08841 * 2 1 3 5 5 C 1.44373 * 106.98198 * 146.00455 * 4 2 1 6 6 H 1.08999 * 110.61848 * 78.44062 * 5 4 2 7 7 C 1.52999 * 110.62257 * 201.27925 * 5 4 2 8 8 C 1.55227 * 103.56520 * 320.01468 * 5 4 2 9 9 H 1.08999 * 111.02550 * 155.07497 * 8 5 4 10 10 C 1.53007 * 110.88822 * 278.74416 * 8 5 4 11 11 C 1.54106 * 109.87938 * 238.98866 * 2 1 3 12 12 H 1.09007 * 110.48429 * 119.58744 * 11 2 1 13 13 N 1.46500 * 110.48338 * 357.07841 * 11 2 1 14 14 S 1.65601 * 120.00379 * 98.24531 * 13 11 2 15 15 O 1.42106 * 106.39905 * 311.45575 * 14 13 11 16 16 O 1.42094 * 106.40205 * 178.53745 * 14 13 11 17 17 C 1.76202 * 107.21920 * 64.99301 * 14 13 11 18 18 C 1.38636 * 119.74947 * 269.72952 * 17 14 13 19 19 C 1.37620 * 120.24335 * 180.27410 * 18 17 14 20 20 C 1.40717 * 119.74909 * 359.97438 * 19 18 17 21 21 C 1.41394 * 120.24463 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99677 * 24.36174 * 21 20 19 23 23 C 1.39940 * 120.00294 * 204.35775 * 21 20 19 24 24 N 1.30832 * 119.99838 * 17.86523 * 23 21 20 25 25 Si 1.86800 * 120.00465 * 197.87008 * 23 21 20 26 26 H 1.48495 * 109.46921 * 359.97438 * 25 23 21 27 27 H 1.48489 * 109.47434 * 119.99803 * 25 23 21 28 28 H 1.48507 * 109.46764 * 240.00056 * 25 23 21 29 29 C 1.40715 * 119.51102 * 0.02562 * 20 19 18 30 30 C 1.37621 * 119.74407 * 0.02562 * 29 20 19 31 31 H 1.09000 * 109.47392 * 181.00725 * 1 2 3 32 32 H 1.08999 * 109.47000 * 301.00978 * 1 2 3 33 33 H 1.09005 * 109.47506 * 61.00192 * 1 2 3 34 34 H 1.09003 * 109.46982 * 58.55025 * 7 5 4 35 35 H 1.09000 * 109.47196 * 178.54234 * 7 5 4 36 36 H 1.08997 * 109.47454 * 298.55149 * 7 5 4 37 37 H 1.09004 * 109.46840 * 172.56529 * 10 8 5 38 38 H 1.08995 * 109.46995 * 292.56912 * 10 8 5 39 39 H 1.09004 * 109.46982 * 52.57105 * 10 8 5 40 40 H 0.97000 * 120.00015 * 278.23752 * 13 11 2 41 41 H 1.07997 * 119.87678 * 0.25212 * 18 17 14 42 42 H 1.08001 * 120.12512 * 180.02562 * 19 18 17 43 43 H 0.96998 * 119.99947 * 180.02562 * 24 23 21 44 44 H 1.07997 * 120.12618 * 180.02562 * 29 20 19 45 45 H 1.07998 * 119.87249 * 180.02562 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6974 1.1567 5 6 3.2416 -1.3610 0.7620 6 1 4.0707 -0.6540 0.7321 7 6 3.5570 -2.5186 1.7114 8 6 2.9246 -1.8882 -0.6632 9 1 3.8374 -2.0148 -1.2453 10 6 2.1353 -3.1973 -0.5975 11 6 2.0539 -0.7467 -1.2421 12 1 2.6578 -0.0821 -1.8601 13 7 0.9393 -1.2951 -2.0187 14 16 0.3744 -0.4806 -3.3452 15 8 0.1912 0.8689 -2.9394 16 8 -0.6687 -1.2765 -3.8906 17 6 1.6688 -0.4693 -4.5407 18 6 2.5848 0.5712 -4.5529 19 6 3.5965 0.5932 -5.4857 20 6 3.6992 -0.4460 -6.4289 21 6 4.7347 -0.4343 -7.3916 22 1 5.6491 0.1057 -7.1945 23 6 4.5750 -1.1223 -8.5996 24 7 3.3799 -1.4755 -8.9982 25 14 6.0679 -1.5367 -9.6431 26 1 7.2941 -1.0304 -8.9759 27 1 6.1646 -3.0095 -9.8060 28 1 5.9316 -0.8990 -10.9774 29 6 2.7637 -1.4970 -6.4070 30 6 1.7597 -1.4978 -5.4658 31 1 -0.3634 -1.0275 0.0181 32 1 -0.3633 0.5294 0.8808 33 1 -0.3634 0.4982 -0.8988 34 1 2.7284 -3.2268 1.7085 35 1 4.4660 -3.0217 1.3816 36 1 3.7011 -2.1321 2.7203 37 1 1.8119 -3.4773 -1.6001 38 1 2.7691 -3.9835 -0.1873 39 1 1.2626 -3.0637 0.0418 40 1 0.5323 -2.1354 -1.7559 41 1 2.5040 1.3677 -3.8280 42 1 4.3093 1.4045 -5.4932 43 1 3.2692 -1.9527 -9.8353 44 1 2.8335 -2.2998 -7.1260 45 1 1.0408 -2.3036 -5.4468 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647316749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:21 Heat of formation + Delta-G solvation = -109.561671 kcal Electronic energy + Delta-G solvation = -28513.780520 eV Core-core repulsion = 24622.579904 eV Total energy + Delta-G solvation = -3891.200616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.25525 -37.62699 -36.55622 -35.23250 -35.04607 -34.08840 -33.60709 -30.32975 -30.02982 -29.53221 -29.03574 -27.15264 -25.85901 -23.45784 -21.56256 -21.22929 -20.85403 -20.02080 -18.99553 -17.70279 -17.44202 -16.94436 -16.43900 -16.08138 -15.49556 -15.39353 -14.67598 -14.27048 -14.08583 -13.98228 -13.74068 -13.42541 -13.29338 -12.98813 -12.49171 -12.46938 -12.27841 -12.22372 -12.00634 -11.99128 -11.78737 -11.66227 -11.45742 -11.37264 -11.28690 -11.22533 -11.06259 -11.04501 -10.92352 -10.78176 -10.60333 -10.44467 -9.88133 -9.76175 -9.58847 -9.52031 -9.04753 -8.01165 -7.75910 -7.18422 -4.84817 1.19431 2.20095 2.83866 2.85600 2.88343 2.92175 3.59738 3.63392 3.79471 4.18869 4.32259 4.53849 4.64278 4.82049 4.87085 5.03237 5.18360 5.20125 5.31436 5.37209 5.38665 5.45080 5.51378 5.59561 5.76134 5.80207 5.88912 5.95691 5.96495 6.00585 6.07361 6.10683 6.19831 6.25753 6.41574 6.63354 6.66260 6.86349 6.95892 6.99276 7.22409 7.29275 7.37536 7.58587 7.72286 7.91945 8.27445 8.46621 8.60072 9.72997 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.003473 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.289255 B = 8059.127261 C = 8957.332555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 H 0.076 0.924 4 O -0.370 6.370 5 C 0.074 3.926 6 H 0.071 0.929 7 C -0.146 4.146 8 C -0.126 4.126 9 H 0.095 0.905 10 C -0.145 4.145 11 C 0.134 3.866 12 H 0.103 0.897 13 N -1.113 6.113 14 S 2.688 3.312 15 O -0.981 6.981 16 O -0.983 6.983 17 C -0.788 4.788 18 C -0.002 4.002 19 C -0.238 4.238 20 C 0.139 3.861 21 C -0.435 4.435 22 H 0.088 0.912 23 C 0.072 3.928 24 N -0.763 5.763 25 Si 0.917 3.083 26 H -0.256 1.256 27 H -0.267 1.267 28 H -0.270 1.270 29 C -0.183 4.183 30 C -0.014 4.014 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.412 0.588 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.289 0.711 44 H 0.122 0.878 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 -3.335 13.078 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.003 3.997 3 H 0.093 0.907 4 O -0.290 6.290 5 C 0.016 3.984 6 H 0.089 0.911 7 C -0.203 4.203 8 C -0.146 4.146 9 H 0.114 0.886 10 C -0.203 4.203 11 C 0.026 3.974 12 H 0.121 0.879 13 N -0.870 5.870 14 S 2.787 3.213 15 O -0.971 6.971 16 O -0.974 6.974 17 C -0.884 4.884 18 C -0.022 4.022 19 C -0.258 4.258 20 C 0.136 3.864 21 C -0.462 4.462 22 H 0.106 0.894 23 C -0.151 4.151 24 N -0.385 5.385 25 Si 0.740 3.260 26 H -0.180 1.180 27 H -0.192 1.192 28 H -0.195 1.195 29 C -0.204 4.204 30 C -0.034 4.034 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.249 0.751 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.140 0.860 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.675 -2.909 12.984 13.323 hybrid contribution 1.236 -0.616 -1.075 1.750 sum 1.911 -3.525 11.909 12.565 Atomic orbital electron populations 1.21992 0.93460 1.02462 1.03147 1.23147 0.96033 0.95656 0.84855 0.90660 1.88882 1.39353 1.67657 1.33088 1.23144 0.88138 0.94025 0.93111 0.91133 1.21815 1.02071 0.97350 0.99080 1.22948 0.99635 0.95629 0.96355 0.88631 1.21745 1.00364 0.95798 1.02372 1.22022 0.87306 0.94994 0.93126 0.87918 1.55928 1.47202 1.38196 1.45688 1.01401 0.74291 0.72949 0.72647 1.93475 1.85873 1.35386 1.82341 1.93504 1.54907 1.70729 1.78246 1.29102 1.26043 1.10058 1.23224 1.20167 0.92291 0.93784 0.95968 1.21024 1.02043 1.00502 1.02239 1.17852 0.90317 0.88796 0.89473 1.19982 1.01926 1.25345 0.98916 0.89381 1.26152 0.97398 0.93009 0.98509 1.69833 1.23291 1.25474 1.19941 0.86106 0.81301 0.79343 0.79285 1.17961 1.19212 1.19477 1.21340 0.98068 1.00344 1.00598 1.20241 0.95757 0.94529 0.92894 0.92232 0.92434 0.89744 0.91392 0.91203 0.92120 0.91553 0.91934 0.91955 0.75148 0.87845 0.88186 0.89933 0.86007 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.58 37.15 0.32 -1.72 16 2 C 0.06 0.82 4.05 -26.16 -0.11 0.71 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 O -0.37 -4.75 10.88 -35.23 -0.38 -5.13 16 5 C 0.07 0.78 3.78 -25.55 -0.10 0.68 16 6 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 7 C -0.15 -1.25 8.89 37.16 0.33 -0.92 16 8 C -0.13 -1.39 3.53 -88.49 -0.31 -1.70 16 9 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 10 C -0.15 -1.47 6.73 37.16 0.25 -1.22 16 11 C 0.13 1.77 3.44 -66.40 -0.23 1.54 16 12 H 0.10 1.39 7.38 -51.93 -0.38 1.01 16 13 N -1.11 -15.85 3.46 -3.59 -0.01 -15.86 16 14 S 2.69 49.87 5.39 -107.50 -0.58 49.30 16 15 O -0.98 -19.52 14.91 -57.17 -0.85 -20.37 16 16 O -0.98 -20.76 17.26 -57.17 -0.99 -21.74 16 17 C -0.79 -16.75 5.90 -39.29 -0.23 -16.98 16 18 C 0.00 -0.04 8.93 -39.66 -0.35 -0.40 16 19 C -0.24 -5.42 9.80 -38.87 -0.38 -5.81 16 20 C 0.14 3.44 5.58 -106.83 -0.60 2.84 16 21 C -0.43 -10.42 9.05 -37.74 -0.34 -10.76 16 22 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 23 C 0.07 1.63 5.14 -17.34 -0.09 1.54 16 24 N -0.76 -18.04 10.95 55.55 0.61 -17.43 16 25 Si 0.92 16.66 29.60 -169.99 -5.03 11.62 16 26 H -0.26 -4.60 7.11 56.52 0.40 -4.19 16 27 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 28 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 29 C -0.18 -4.48 8.70 -38.87 -0.34 -4.82 16 30 C -0.01 -0.32 9.49 -39.66 -0.38 -0.69 16 31 H 0.06 0.74 7.62 -51.93 -0.40 0.34 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.26 5.37 -51.93 -0.28 0.98 16 34 H 0.07 0.59 6.50 -51.93 -0.34 0.25 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.70 6.99 -51.93 -0.36 0.34 16 38 H 0.06 0.54 7.15 -51.93 -0.37 0.17 16 39 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 40 H 0.41 5.12 6.21 -34.47 -0.21 4.91 16 41 H 0.10 1.97 7.59 -52.49 -0.40 1.57 16 42 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 43 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 44 H 0.12 3.03 6.15 -52.49 -0.32 2.71 16 45 H 0.10 2.17 7.60 -52.49 -0.40 1.77 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -29.06 364.89 -10.67 -39.73 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.38 Total: 12.11 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: -2.55 Total: -37.71 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.60 Total: -33.30 kcal Atomic # 8 Polarization: -45.03 SS G_CDS: -2.22 Total: -47.25 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.03 Total: 11.62 kcal Atomic # 16 Polarization: 49.87 SS G_CDS: -0.58 Total: 49.30 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.06 -10.67 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647316749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.828 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds