Wall clock time and date at job start Tue Mar 31 2020 23:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09001 * 109.87789 * 2 1 4 4 O 1.43744 * 110.00629 * 121.08841 * 2 1 3 5 5 C 1.44373 * 106.98198 * 146.00455 * 4 2 1 6 6 H 1.08999 * 110.61848 * 78.44062 * 5 4 2 7 7 C 1.52999 * 110.62257 * 201.27925 * 5 4 2 8 8 C 1.55227 * 103.56520 * 320.01468 * 5 4 2 9 9 H 1.08999 * 111.02550 * 155.07497 * 8 5 4 10 10 C 1.53007 * 110.88822 * 278.74416 * 8 5 4 11 11 C 1.54106 * 109.87938 * 238.98866 * 2 1 3 12 12 H 1.09007 * 110.48429 * 119.58744 * 11 2 1 13 13 N 1.46500 * 110.48338 * 357.07841 * 11 2 1 14 14 S 1.65601 * 120.00379 * 98.24531 * 13 11 2 15 15 O 1.42106 * 106.39905 * 311.45575 * 14 13 11 16 16 O 1.42094 * 106.40205 * 178.53745 * 14 13 11 17 17 C 1.76202 * 107.21920 * 64.99301 * 14 13 11 18 18 C 1.38636 * 119.74947 * 269.72952 * 17 14 13 19 19 C 1.37620 * 120.24335 * 180.27410 * 18 17 14 20 20 C 1.40717 * 119.74909 * 359.97438 * 19 18 17 21 21 C 1.41394 * 120.24463 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99677 * 24.36174 * 21 20 19 23 23 C 1.39940 * 120.00294 * 204.35775 * 21 20 19 24 24 N 1.30832 * 119.99838 * 17.86523 * 23 21 20 25 25 Si 1.86800 * 120.00465 * 197.87008 * 23 21 20 26 26 H 1.48495 * 109.46921 * 359.97438 * 25 23 21 27 27 H 1.48489 * 109.47434 * 119.99803 * 25 23 21 28 28 H 1.48507 * 109.46764 * 240.00056 * 25 23 21 29 29 C 1.40715 * 119.51102 * 0.02562 * 20 19 18 30 30 C 1.37621 * 119.74407 * 0.02562 * 29 20 19 31 31 H 1.09000 * 109.47392 * 181.00725 * 1 2 3 32 32 H 1.08999 * 109.47000 * 301.00978 * 1 2 3 33 33 H 1.09005 * 109.47506 * 61.00192 * 1 2 3 34 34 H 1.09003 * 109.46982 * 58.55025 * 7 5 4 35 35 H 1.09000 * 109.47196 * 178.54234 * 7 5 4 36 36 H 1.08997 * 109.47454 * 298.55149 * 7 5 4 37 37 H 1.09004 * 109.46840 * 172.56529 * 10 8 5 38 38 H 1.08995 * 109.46995 * 292.56912 * 10 8 5 39 39 H 1.09004 * 109.46982 * 52.57105 * 10 8 5 40 40 H 0.97000 * 120.00015 * 278.23752 * 13 11 2 41 41 H 1.07997 * 119.87678 * 0.25212 * 18 17 14 42 42 H 1.08001 * 120.12512 * 180.02562 * 19 18 17 43 43 H 0.96998 * 119.99947 * 180.02562 * 24 23 21 44 44 H 1.07997 * 120.12618 * 180.02562 * 29 20 19 45 45 H 1.07998 * 119.87249 * 180.02562 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6974 1.1567 5 6 3.2416 -1.3610 0.7620 6 1 4.0707 -0.6540 0.7321 7 6 3.5570 -2.5186 1.7114 8 6 2.9246 -1.8882 -0.6632 9 1 3.8374 -2.0148 -1.2453 10 6 2.1353 -3.1973 -0.5975 11 6 2.0539 -0.7467 -1.2421 12 1 2.6578 -0.0821 -1.8601 13 7 0.9393 -1.2951 -2.0187 14 16 0.3744 -0.4806 -3.3452 15 8 0.1912 0.8689 -2.9394 16 8 -0.6687 -1.2765 -3.8906 17 6 1.6688 -0.4693 -4.5407 18 6 2.5848 0.5712 -4.5529 19 6 3.5965 0.5932 -5.4857 20 6 3.6992 -0.4460 -6.4289 21 6 4.7347 -0.4343 -7.3916 22 1 5.6491 0.1057 -7.1945 23 6 4.5750 -1.1223 -8.5996 24 7 3.3799 -1.4755 -8.9982 25 14 6.0679 -1.5367 -9.6431 26 1 7.2941 -1.0304 -8.9759 27 1 6.1646 -3.0095 -9.8060 28 1 5.9316 -0.8990 -10.9774 29 6 2.7637 -1.4970 -6.4070 30 6 1.7597 -1.4978 -5.4658 31 1 -0.3634 -1.0275 0.0181 32 1 -0.3633 0.5294 0.8808 33 1 -0.3634 0.4982 -0.8988 34 1 2.7284 -3.2268 1.7085 35 1 4.4660 -3.0217 1.3816 36 1 3.7011 -2.1321 2.7203 37 1 1.8119 -3.4773 -1.6001 38 1 2.7691 -3.9835 -0.1873 39 1 1.2626 -3.0637 0.0418 40 1 0.5323 -2.1354 -1.7559 41 1 2.5040 1.3677 -3.8280 42 1 4.3093 1.4045 -5.4932 43 1 3.2692 -1.9527 -9.8353 44 1 2.8335 -2.2998 -7.1260 45 1 1.0408 -2.3036 -5.4468 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647316749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:20 Heat of formation + Delta-G solvation = -127.327621 kcal Electronic energy + Delta-G solvation = -28514.550910 eV Core-core repulsion = 24622.579904 eV Total energy + Delta-G solvation = -3891.971006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21832 -39.39005 -38.15947 -36.81643 -36.17939 -35.81166 -34.49164 -32.08515 -31.31026 -31.14171 -29.84985 -28.10911 -27.60465 -24.34462 -23.30355 -22.98571 -21.92964 -20.91939 -20.38768 -19.44341 -18.87111 -18.36485 -17.57810 -17.41333 -17.06422 -16.35007 -16.16272 -15.83526 -15.25140 -15.12032 -15.02717 -14.90546 -14.62580 -14.15165 -14.03141 -13.88532 -13.53929 -13.34668 -13.22988 -13.14072 -13.04329 -13.00316 -12.97186 -12.88541 -12.61849 -12.58461 -12.49946 -12.14204 -12.10979 -11.94508 -11.71654 -11.54700 -11.46662 -11.33517 -11.21670 -10.69533 -10.23870 -9.79543 -9.55682 -8.88060 -6.65722 -0.33066 0.47374 1.04970 1.35872 1.41425 1.53186 2.10819 2.20385 2.51785 2.85871 2.89606 3.44431 3.52726 3.56470 3.72548 3.91733 3.99448 4.17764 4.22522 4.30197 4.33147 4.44124 4.45205 4.61011 4.68452 4.72196 4.86894 4.90166 4.93674 4.96037 5.02028 5.06599 5.10083 5.16317 5.20933 5.23025 5.32534 5.35335 5.44926 5.51771 5.58851 5.75699 5.92527 6.01847 6.12751 6.14874 6.48885 6.67883 6.80529 8.07166 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.003473 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.289255 B = 8059.127261 C = 8957.332555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.063 3.937 3 H 0.077 0.923 4 O -0.379 6.379 5 C 0.070 3.930 6 H 0.078 0.922 7 C -0.143 4.143 8 C -0.122 4.122 9 H 0.100 0.900 10 C -0.147 4.147 11 C 0.125 3.875 12 H 0.099 0.901 13 N -1.096 6.096 14 S 2.719 3.281 15 O -0.990 6.990 16 O -1.007 7.007 17 C -0.796 4.796 18 C -0.002 4.002 19 C -0.254 4.254 20 C 0.112 3.888 21 C -0.465 4.465 22 H 0.093 0.907 23 C 0.034 3.966 24 N -0.799 5.799 25 Si 0.992 3.008 26 H -0.251 1.251 27 H -0.261 1.261 28 H -0.264 1.264 29 C -0.207 4.207 30 C -0.020 4.020 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.423 0.577 41 H 0.128 0.872 42 H 0.112 0.888 43 H 0.298 0.702 44 H 0.109 0.891 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 -3.841 14.327 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.004 3.996 3 H 0.095 0.905 4 O -0.299 6.299 5 C 0.013 3.987 6 H 0.096 0.904 7 C -0.200 4.200 8 C -0.143 4.143 9 H 0.118 0.882 10 C -0.204 4.204 11 C 0.016 3.984 12 H 0.117 0.883 13 N -0.857 5.857 14 S 2.815 3.185 15 O -0.980 6.980 16 O -0.998 6.998 17 C -0.889 4.889 18 C -0.021 4.021 19 C -0.274 4.274 20 C 0.109 3.891 21 C -0.492 4.492 22 H 0.111 0.889 23 C -0.185 4.185 24 N -0.422 5.422 25 Si 0.811 3.189 26 H -0.174 1.174 27 H -0.186 1.186 28 H -0.189 1.189 29 C -0.227 4.227 30 C -0.040 4.040 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.262 0.738 41 H 0.145 0.855 42 H 0.130 0.870 43 H 0.109 0.891 44 H 0.127 0.873 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.654 -3.414 14.222 14.719 hybrid contribution 0.848 -0.438 -1.313 1.623 sum 2.502 -3.852 12.909 13.702 Atomic orbital electron populations 1.21994 0.93794 1.02865 1.02734 1.23092 0.95863 0.95811 0.84883 0.90493 1.88875 1.40329 1.67840 1.32902 1.23338 0.87534 0.94753 0.93093 0.90364 1.21828 1.02832 0.96597 0.98759 1.22975 0.99412 0.95245 0.96636 0.88186 1.21772 1.00671 0.95817 1.02155 1.22229 0.87030 0.96045 0.93046 0.88340 1.55480 1.47692 1.38510 1.44058 1.00494 0.72993 0.72565 0.72431 1.93464 1.85736 1.36457 1.82385 1.93468 1.55771 1.71255 1.79264 1.29583 1.26252 1.09251 1.23796 1.20456 0.91601 0.94239 0.95842 1.21260 1.03068 1.00619 1.02499 1.18193 0.90926 0.89447 0.90545 1.20274 1.02208 1.26883 0.99812 0.88861 1.27036 1.00175 0.92086 0.99231 1.69872 1.25348 1.26099 1.20865 0.85004 0.77372 0.79183 0.77365 1.17445 1.18561 1.18875 1.21346 0.99413 1.00589 1.01359 1.20428 0.95482 0.95328 0.92811 0.91510 0.91542 0.91410 0.91367 0.89545 0.91829 0.92184 0.90095 0.91907 0.73753 0.85468 0.86972 0.89074 0.87283 0.87020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 8.58 71.98 0.62 -3.32 16 2 C 0.06 1.55 4.05 30.97 0.13 1.67 16 3 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 4 O -0.38 -8.94 10.88 -148.98 -1.62 -10.56 16 5 C 0.07 1.32 3.78 31.36 0.12 1.43 16 6 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 7 C -0.14 -2.06 8.89 71.98 0.64 -1.42 16 8 C -0.12 -2.45 3.53 -9.41 -0.03 -2.49 16 9 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 10 C -0.15 -2.63 6.73 71.98 0.48 -2.15 16 11 C 0.12 3.09 3.44 45.98 0.16 3.24 16 12 H 0.10 2.54 7.38 -2.38 -0.02 2.52 16 13 N -1.10 -29.76 3.46 -165.27 -0.57 -30.33 16 14 S 2.72 98.63 5.39 -56.49 -0.30 98.33 16 15 O -0.99 -38.37 14.91 -128.00 -1.91 -40.28 16 16 O -1.01 -41.86 17.26 -128.00 -2.21 -44.07 16 17 C -0.80 -33.66 5.90 22.46 0.13 -33.53 16 18 C 0.00 -0.07 8.93 22.22 0.20 0.13 16 19 C -0.25 -11.71 9.80 22.73 0.22 -11.49 16 20 C 0.11 5.69 5.58 -21.29 -0.12 5.57 16 21 C -0.46 -22.75 9.05 23.46 0.21 -22.54 16 22 H 0.09 4.28 7.91 -2.91 -0.02 4.26 16 23 C 0.03 1.55 5.14 85.25 0.44 1.99 16 24 N -0.80 -38.61 10.95 21.83 0.24 -38.37 16 25 Si 0.99 33.92 29.60 68.60 2.03 35.95 16 26 H -0.25 -8.30 7.11 99.48 0.71 -7.60 16 27 H -0.26 -8.60 7.11 99.48 0.71 -7.90 16 28 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 29 C -0.21 -10.44 8.70 22.73 0.20 -10.24 16 30 C -0.02 -0.94 9.49 22.22 0.21 -0.73 16 31 H 0.07 1.54 7.62 -2.39 -0.02 1.52 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.94 5.37 -2.38 -0.01 1.93 16 34 H 0.07 0.99 6.50 -2.39 -0.02 0.97 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 1.15 6.99 -2.38 -0.02 1.14 16 38 H 0.08 1.17 7.15 -2.39 -0.02 1.15 16 39 H 0.06 1.12 7.87 -2.38 -0.02 1.11 16 40 H 0.42 9.86 6.21 -96.75 -0.60 9.26 16 41 H 0.13 4.68 7.59 -2.91 -0.02 4.65 16 42 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 43 H 0.30 12.79 8.30 -92.71 -0.77 12.02 16 44 H 0.11 5.67 6.15 -2.91 -0.02 5.65 16 45 H 0.11 4.81 7.60 -2.91 -0.02 4.78 16 Total: -1.00 -62.31 364.89 -0.33 -62.64 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: 0.41 Total: 40.55 kcal Atomic # 6 Polarization: -77.47 SS G_CDS: 3.61 Total: -73.86 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -0.33 Total: -68.71 kcal Atomic # 8 Polarization: -89.17 SS G_CDS: -5.74 Total: -94.91 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.95 kcal Atomic # 16 Polarization: 98.63 SS G_CDS: -0.30 Total: 98.33 kcal Total: -62.31 -0.33 -62.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647316749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.689 kcal (2) G-P(sol) polarization free energy of solvation -62.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds