Wall clock time and date at job start Tue Mar 31 2020 23:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.86924 * 2 1 4 4 O 1.43746 * 110.00723 * 121.09145 * 2 1 3 5 5 C 1.44379 * 106.97572 * 146.00906 * 4 2 1 6 6 H 1.09000 * 110.61796 * 78.43869 * 5 4 2 7 7 C 1.52993 * 110.61719 * 201.43675 * 5 4 2 8 8 C 1.54995 * 103.49226 * 319.94121 * 5 4 2 9 9 H 1.09000 * 110.90433 * 278.82714 * 8 5 4 10 10 C 1.52995 * 110.91021 * 155.22009 * 8 5 4 11 11 C 1.54105 * 109.87912 * 238.99782 * 2 1 3 12 12 H 1.09000 * 110.48678 * 357.20406 * 11 2 1 13 13 N 1.46499 * 110.48552 * 119.71520 * 11 2 1 14 14 S 1.65599 * 119.99948 * 234.89300 * 13 11 2 15 15 O 1.42099 * 106.40243 * 177.31201 * 14 13 11 16 16 O 1.42104 * 106.40387 * 310.23378 * 14 13 11 17 17 C 1.76195 * 107.21770 * 63.77338 * 14 13 11 18 18 C 1.38636 * 119.75161 * 264.03437 * 17 14 13 19 19 C 1.37613 * 120.25056 * 179.76408 * 18 17 14 20 20 C 1.40718 * 119.74521 * 0.49161 * 19 18 17 21 21 C 1.41398 * 120.24683 * 179.79036 * 20 19 18 22 22 H 1.08000 * 119.99808 * 328.14758 * 21 20 19 23 23 C 1.39939 * 120.00065 * 148.13954 * 21 20 19 24 24 N 1.30821 * 120.00545 * 345.24764 * 23 21 20 25 25 Si 1.86806 * 119.99861 * 165.24178 * 23 21 20 26 26 H 1.48505 * 109.47007 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.46969 * 120.00270 * 25 23 21 28 28 H 1.48492 * 109.47167 * 240.00296 * 25 23 21 29 29 C 1.40716 * 119.51150 * 359.76456 * 20 19 18 30 30 C 1.37619 * 119.74462 * 0.02562 * 29 20 19 31 31 H 1.09001 * 109.46737 * 185.33760 * 1 2 3 32 32 H 1.08998 * 109.47185 * 305.33096 * 1 2 3 33 33 H 1.08988 * 109.47663 * 65.33751 * 1 2 3 34 34 H 1.08999 * 109.47137 * 58.54917 * 7 5 4 35 35 H 1.09000 * 109.47249 * 178.54722 * 7 5 4 36 36 H 1.08998 * 109.47314 * 298.54338 * 7 5 4 37 37 H 1.08993 * 109.47312 * 307.29686 * 10 8 5 38 38 H 1.09007 * 109.46962 * 67.29327 * 10 8 5 39 39 H 1.08997 * 109.47239 * 187.29291 * 10 8 5 40 40 H 0.97000 * 120.00301 * 55.17430 * 13 11 2 41 41 H 1.08001 * 119.87050 * 0.02562 * 18 17 14 42 42 H 1.07998 * 120.13181 * 180.23550 * 19 18 17 43 43 H 0.96993 * 120.00404 * 179.97438 * 24 23 21 44 44 H 1.07996 * 120.13107 * 179.97438 * 29 20 19 45 45 H 1.08002 * 119.87741 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0218 -0.6975 1.1567 5 6 3.2418 -1.3609 0.7618 6 1 4.0708 -0.6538 0.7319 7 6 3.5551 -2.5209 1.7087 8 6 2.9228 -1.8881 -0.6604 9 1 2.3592 -2.8199 -0.6125 10 6 4.2045 -2.0687 -1.4761 11 6 2.0540 -0.7465 -1.2422 12 1 1.2246 -1.1525 -1.8213 13 7 2.8680 0.1460 -2.0711 14 16 2.4980 0.3562 -3.6715 15 8 3.4196 1.3141 -4.1739 16 8 2.3510 -0.9449 -4.2236 17 6 0.9073 1.1103 -3.7443 18 6 -0.2199 0.3229 -3.9215 19 6 -1.4677 0.9006 -3.9751 20 6 -1.5961 2.2971 -3.8596 21 6 -2.8727 2.9023 -3.9175 22 1 -3.6513 2.4634 -4.5239 23 6 -3.1273 4.0697 -3.1892 24 7 -2.3050 4.4428 -2.2426 25 14 -4.6416 5.0957 -3.5686 26 1 -5.4042 4.4624 -4.6744 27 1 -5.4998 5.1775 -2.3595 28 1 -4.2249 6.4623 -3.9733 29 6 -0.4446 3.0870 -3.6854 30 6 0.7928 2.4873 -3.6304 31 1 -0.3633 -1.0232 0.0956 32 1 -0.3633 0.5943 0.8384 33 1 -0.3634 0.4288 -0.9338 34 1 2.7261 -3.2286 1.7031 35 1 4.4642 -3.0238 1.3790 36 1 3.6984 -2.1370 2.7187 37 1 4.7815 -1.1442 -1.4557 38 1 4.7974 -2.8765 -1.0471 39 1 3.9478 -2.3141 -2.5066 40 1 3.6262 0.6106 -1.6836 41 1 -0.1186 -0.7484 -4.0137 42 1 -2.3449 0.2850 -4.1094 43 1 -2.4813 5.2522 -1.7381 44 1 -0.5315 4.1597 -3.5960 45 1 1.6781 3.0915 -3.4971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647316767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:26 Heat of formation + Delta-G solvation = -119.977341 kcal Electronic energy + Delta-G solvation = -28651.787876 eV Core-core repulsion = 24760.135603 eV Total energy + Delta-G solvation = -3891.652274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.07748 -37.64574 -36.56559 -35.22532 -34.95311 -34.02489 -33.42027 -30.67125 -30.29728 -29.57269 -29.19993 -26.27252 -25.82320 -23.00500 -21.56123 -21.52330 -21.16657 -20.30906 -18.94402 -17.63429 -17.20317 -16.78852 -16.57805 -15.78309 -15.51522 -15.16008 -14.89640 -14.50830 -14.13624 -13.64470 -13.53012 -13.40215 -13.23390 -12.90861 -12.45600 -12.41956 -12.25636 -12.23690 -12.11745 -11.93365 -11.72513 -11.56917 -11.50898 -11.43761 -11.35015 -11.24115 -11.18107 -11.11558 -10.97739 -10.92819 -10.46083 -10.40164 -9.82429 -9.69627 -9.57042 -9.56165 -9.08186 -7.95135 -7.77267 -7.14322 -4.83272 1.16228 2.18171 2.83289 2.87129 2.90308 2.95011 3.57391 3.67223 3.85088 4.20777 4.42965 4.48547 4.61331 4.82541 4.98461 5.10629 5.16310 5.27757 5.30203 5.39615 5.41955 5.47366 5.52117 5.64884 5.79926 5.84687 5.91311 5.98732 6.03038 6.05762 6.07214 6.16625 6.29101 6.32009 6.54145 6.62086 6.69766 6.82943 6.96753 6.99111 7.21734 7.30612 7.34838 7.53496 7.72449 7.93359 8.27961 8.47934 8.58375 9.80071 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.003778 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.365644 B = 7410.240737 C = 8531.991450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 H 0.078 0.922 4 O -0.371 6.371 5 C 0.074 3.926 6 H 0.068 0.932 7 C -0.144 4.144 8 C -0.131 4.131 9 H 0.093 0.907 10 C -0.140 4.140 11 C 0.134 3.866 12 H 0.108 0.892 13 N -1.114 6.114 14 S 2.690 3.310 15 O -0.983 6.983 16 O -0.982 6.982 17 C -0.782 4.782 18 C -0.003 4.003 19 C -0.231 4.231 20 C 0.146 3.854 21 C -0.443 4.443 22 H 0.088 0.912 23 C 0.074 3.926 24 N -0.772 5.772 25 Si 0.915 3.085 26 H -0.257 1.257 27 H -0.271 1.271 28 H -0.268 1.268 29 C -0.174 4.174 30 C -0.013 4.013 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.410 0.590 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.288 0.712 44 H 0.115 0.885 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.875 -7.364 6.405 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 H 0.096 0.904 4 O -0.291 6.291 5 C 0.016 3.984 6 H 0.086 0.914 7 C -0.201 4.201 8 C -0.151 4.151 9 H 0.112 0.888 10 C -0.198 4.198 11 C 0.026 3.974 12 H 0.126 0.874 13 N -0.869 5.869 14 S 2.788 3.212 15 O -0.974 6.974 16 O -0.972 6.972 17 C -0.879 4.879 18 C -0.024 4.024 19 C -0.252 4.252 20 C 0.143 3.857 21 C -0.471 4.471 22 H 0.106 0.894 23 C -0.148 4.148 24 N -0.395 5.395 25 Si 0.738 3.262 26 H -0.181 1.181 27 H -0.196 1.196 28 H -0.193 1.193 29 C -0.195 4.195 30 C -0.034 4.034 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.243 0.757 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.133 0.867 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.247 -7.545 6.024 12.072 hybrid contribution -0.947 1.177 0.283 1.537 sum 6.301 -6.368 6.307 10.955 Atomic orbital electron populations 1.21949 0.92588 1.02573 1.03934 1.23160 0.95927 0.96028 0.84091 0.90430 1.88900 1.39283 1.67709 1.33171 1.23169 0.88156 0.93897 0.93157 0.91379 1.21759 1.01888 0.97161 0.99293 1.23082 0.97931 0.98968 0.95166 0.88842 1.21681 0.95896 1.01471 1.00741 1.22044 0.93213 0.89226 0.92949 0.87440 1.55842 1.41631 1.58823 1.30564 1.01380 0.74692 0.73315 0.71776 1.93507 1.63564 1.62894 1.77418 1.93489 1.87648 1.40049 1.76051 1.29150 1.17998 1.04089 1.36614 1.20215 0.92059 0.97069 0.93022 1.21131 0.95555 0.94802 1.13708 1.17846 0.93172 0.90896 0.83824 1.19919 0.97696 1.06311 1.23172 0.89421 1.26055 0.98651 0.96884 0.93165 1.69787 1.35006 1.21260 1.13462 0.86133 0.80582 0.79668 0.79779 1.18063 1.19574 1.19326 1.21211 0.91147 0.99444 1.07655 1.20212 0.97293 0.91798 0.94066 0.92122 0.91905 0.89645 0.91804 0.91272 0.92025 0.92429 0.92561 0.91239 0.75673 0.87626 0.88073 0.90114 0.86666 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.37 37.16 0.35 -1.93 16 2 C 0.07 0.95 3.85 -26.16 -0.10 0.85 16 3 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 4 O -0.37 -5.17 10.89 -35.23 -0.38 -5.55 16 5 C 0.07 0.83 3.43 -25.68 -0.09 0.74 16 6 H 0.07 0.72 8.01 -51.93 -0.42 0.30 16 7 C -0.14 -1.31 9.66 37.15 0.36 -0.95 16 8 C -0.13 -1.52 3.14 -88.62 -0.28 -1.80 16 9 H 0.09 1.03 8.05 -51.93 -0.42 0.61 16 10 C -0.14 -1.53 8.53 37.16 0.32 -1.21 16 11 C 0.13 1.85 3.20 -66.40 -0.21 1.63 16 12 H 0.11 1.55 7.37 -51.93 -0.38 1.17 16 13 N -1.11 -15.89 3.99 -3.59 -0.01 -15.90 16 14 S 2.69 49.18 5.60 -107.50 -0.60 48.58 16 15 O -0.98 -20.32 17.42 -57.17 -1.00 -21.31 16 16 O -0.98 -19.46 16.80 -57.17 -0.96 -20.42 16 17 C -0.78 -16.25 5.94 -39.29 -0.23 -16.49 16 18 C 0.00 -0.07 9.50 -39.66 -0.38 -0.45 16 19 C -0.23 -5.18 9.80 -38.87 -0.38 -5.56 16 20 C 0.15 3.55 5.49 -106.82 -0.59 2.96 16 21 C -0.44 -10.59 9.03 -37.74 -0.34 -10.93 16 22 H 0.09 2.00 7.89 -52.49 -0.41 1.59 16 23 C 0.07 1.67 5.15 -17.35 -0.09 1.58 16 24 N -0.77 -18.00 11.29 55.55 0.63 -17.37 16 25 Si 0.91 16.87 29.58 -169.99 -5.03 11.84 16 26 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 27 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 28 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 29 C -0.17 -4.18 8.65 -38.87 -0.34 -4.52 16 30 C -0.01 -0.30 9.49 -39.66 -0.38 -0.67 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.44 8.14 -51.94 -0.42 1.02 16 34 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.59 7.04 -51.93 -0.37 0.22 16 38 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 40 H 0.41 4.95 8.34 -34.47 -0.29 4.66 16 41 H 0.11 2.00 7.47 -52.49 -0.39 1.61 16 42 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 43 H 0.29 6.05 8.30 -40.82 -0.34 5.71 16 44 H 0.12 2.83 6.62 -52.49 -0.35 2.48 16 45 H 0.10 2.08 7.73 -52.49 -0.41 1.67 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -28.47 379.03 -10.80 -39.27 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.78 Total: 11.90 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: -2.38 Total: -36.74 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.61 Total: -33.27 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -2.34 Total: -47.29 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Atomic # 16 Polarization: 49.18 SS G_CDS: -0.60 Total: 48.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.47 -10.80 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647316767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.710 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds