Wall clock time and date at job start Tue Mar 31 2020 23:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.86924 * 2 1 4 4 O 1.43746 * 110.00723 * 121.09145 * 2 1 3 5 5 C 1.44379 * 106.97572 * 146.00906 * 4 2 1 6 6 H 1.09000 * 110.61796 * 78.43869 * 5 4 2 7 7 C 1.52993 * 110.61719 * 201.43675 * 5 4 2 8 8 C 1.54995 * 103.49226 * 319.94121 * 5 4 2 9 9 H 1.09000 * 110.90433 * 278.82714 * 8 5 4 10 10 C 1.52995 * 110.91021 * 155.22009 * 8 5 4 11 11 C 1.54105 * 109.87912 * 238.99782 * 2 1 3 12 12 H 1.09000 * 110.48678 * 357.20406 * 11 2 1 13 13 N 1.46499 * 110.48552 * 119.71520 * 11 2 1 14 14 S 1.65599 * 119.99948 * 234.89300 * 13 11 2 15 15 O 1.42099 * 106.40243 * 177.31201 * 14 13 11 16 16 O 1.42104 * 106.40387 * 310.23378 * 14 13 11 17 17 C 1.76195 * 107.21770 * 63.77338 * 14 13 11 18 18 C 1.38636 * 119.75161 * 264.03437 * 17 14 13 19 19 C 1.37613 * 120.25056 * 179.76408 * 18 17 14 20 20 C 1.40718 * 119.74521 * 0.49161 * 19 18 17 21 21 C 1.41398 * 120.24683 * 179.79036 * 20 19 18 22 22 H 1.08000 * 119.99808 * 328.14758 * 21 20 19 23 23 C 1.39939 * 120.00065 * 148.13954 * 21 20 19 24 24 N 1.30821 * 120.00545 * 345.24764 * 23 21 20 25 25 Si 1.86806 * 119.99861 * 165.24178 * 23 21 20 26 26 H 1.48505 * 109.47007 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.46969 * 120.00270 * 25 23 21 28 28 H 1.48492 * 109.47167 * 240.00296 * 25 23 21 29 29 C 1.40716 * 119.51150 * 359.76456 * 20 19 18 30 30 C 1.37619 * 119.74462 * 0.02562 * 29 20 19 31 31 H 1.09001 * 109.46737 * 185.33760 * 1 2 3 32 32 H 1.08998 * 109.47185 * 305.33096 * 1 2 3 33 33 H 1.08988 * 109.47663 * 65.33751 * 1 2 3 34 34 H 1.08999 * 109.47137 * 58.54917 * 7 5 4 35 35 H 1.09000 * 109.47249 * 178.54722 * 7 5 4 36 36 H 1.08998 * 109.47314 * 298.54338 * 7 5 4 37 37 H 1.08993 * 109.47312 * 307.29686 * 10 8 5 38 38 H 1.09007 * 109.46962 * 67.29327 * 10 8 5 39 39 H 1.08997 * 109.47239 * 187.29291 * 10 8 5 40 40 H 0.97000 * 120.00301 * 55.17430 * 13 11 2 41 41 H 1.08001 * 119.87050 * 0.02562 * 18 17 14 42 42 H 1.07998 * 120.13181 * 180.23550 * 19 18 17 43 43 H 0.96993 * 120.00404 * 179.97438 * 24 23 21 44 44 H 1.07996 * 120.13107 * 179.97438 * 29 20 19 45 45 H 1.08002 * 119.87741 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0218 -0.6975 1.1567 5 6 3.2418 -1.3609 0.7618 6 1 4.0708 -0.6538 0.7319 7 6 3.5551 -2.5209 1.7087 8 6 2.9228 -1.8881 -0.6604 9 1 2.3592 -2.8199 -0.6125 10 6 4.2045 -2.0687 -1.4761 11 6 2.0540 -0.7465 -1.2422 12 1 1.2246 -1.1525 -1.8213 13 7 2.8680 0.1460 -2.0711 14 16 2.4980 0.3562 -3.6715 15 8 3.4196 1.3141 -4.1739 16 8 2.3510 -0.9449 -4.2236 17 6 0.9073 1.1103 -3.7443 18 6 -0.2199 0.3229 -3.9215 19 6 -1.4677 0.9006 -3.9751 20 6 -1.5961 2.2971 -3.8596 21 6 -2.8727 2.9023 -3.9175 22 1 -3.6513 2.4634 -4.5239 23 6 -3.1273 4.0697 -3.1892 24 7 -2.3050 4.4428 -2.2426 25 14 -4.6416 5.0957 -3.5686 26 1 -5.4042 4.4624 -4.6744 27 1 -5.4998 5.1775 -2.3595 28 1 -4.2249 6.4623 -3.9733 29 6 -0.4446 3.0870 -3.6854 30 6 0.7928 2.4873 -3.6304 31 1 -0.3633 -1.0232 0.0956 32 1 -0.3633 0.5943 0.8384 33 1 -0.3634 0.4288 -0.9338 34 1 2.7261 -3.2286 1.7031 35 1 4.4642 -3.0238 1.3790 36 1 3.6984 -2.1370 2.7187 37 1 4.7815 -1.1442 -1.4557 38 1 4.7974 -2.8765 -1.0471 39 1 3.9478 -2.3141 -2.5066 40 1 3.6262 0.6106 -1.6836 41 1 -0.1186 -0.7484 -4.0137 42 1 -2.3449 0.2850 -4.1094 43 1 -2.4813 5.2522 -1.7381 44 1 -0.5315 4.1597 -3.5960 45 1 1.6781 3.0915 -3.4971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647316767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:25 Heat of formation + Delta-G solvation = -137.422424 kcal Electronic energy + Delta-G solvation = -28652.544352 eV Core-core repulsion = 24760.135603 eV Total energy + Delta-G solvation = -3892.408749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.11726 -39.39404 -38.15873 -36.81592 -36.11105 -35.73925 -34.39027 -32.04976 -31.84582 -31.32600 -30.06349 -27.60361 -27.29277 -23.95535 -23.29396 -23.02789 -22.48118 -21.34944 -20.36448 -19.39027 -18.69662 -18.24979 -17.80719 -17.16956 -16.82259 -16.44376 -16.06235 -15.85827 -15.65951 -15.18395 -14.95236 -14.59365 -14.50194 -14.09636 -13.98554 -13.86004 -13.65447 -13.46719 -13.30316 -13.12490 -13.05764 -13.02221 -12.93518 -12.90465 -12.74224 -12.61296 -12.54146 -12.35080 -12.11303 -12.00286 -11.93746 -11.57222 -11.42985 -11.30251 -11.22753 -10.65647 -10.32362 -9.71904 -9.55003 -8.83696 -6.63701 -0.35371 0.46602 1.04218 1.36690 1.40678 1.52063 2.12755 2.17173 2.52885 2.81462 2.91697 3.45809 3.50544 3.60253 3.62598 3.81235 4.00420 4.17212 4.23478 4.28911 4.34080 4.40502 4.46259 4.55767 4.60702 4.70758 4.82322 4.86822 4.94728 4.99023 5.01753 5.06285 5.08375 5.14033 5.22261 5.22455 5.29953 5.36790 5.42142 5.54185 5.57699 5.72200 5.93127 5.96617 6.13017 6.17385 6.50113 6.70703 6.80040 8.13799 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.003778 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.365644 B = 7410.240737 C = 8531.991450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 H 0.072 0.928 4 O -0.384 6.384 5 C 0.069 3.931 6 H 0.078 0.922 7 C -0.141 4.141 8 C -0.125 4.125 9 H 0.102 0.898 10 C -0.142 4.142 11 C 0.128 3.872 12 H 0.100 0.900 13 N -1.098 6.098 14 S 2.722 3.278 15 O -1.003 7.003 16 O -0.991 6.991 17 C -0.788 4.788 18 C -0.002 4.002 19 C -0.246 4.246 20 C 0.121 3.879 21 C -0.476 4.476 22 H 0.089 0.911 23 C 0.038 3.962 24 N -0.804 5.804 25 Si 0.986 3.014 26 H -0.255 1.255 27 H -0.263 1.263 28 H -0.264 1.264 29 C -0.197 4.197 30 C -0.018 4.018 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.424 0.576 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.296 0.704 44 H 0.101 0.899 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.878 -8.526 7.201 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.012 3.988 3 H 0.090 0.910 4 O -0.303 6.303 5 C 0.012 3.988 6 H 0.096 0.904 7 C -0.198 4.198 8 C -0.145 4.145 9 H 0.120 0.880 10 C -0.200 4.200 11 C 0.019 3.981 12 H 0.118 0.882 13 N -0.857 5.857 14 S 2.818 3.182 15 O -0.994 6.994 16 O -0.981 6.981 17 C -0.881 4.881 18 C -0.022 4.022 19 C -0.266 4.266 20 C 0.118 3.882 21 C -0.504 4.504 22 H 0.107 0.893 23 C -0.180 4.180 24 N -0.427 5.427 25 Si 0.806 3.194 26 H -0.179 1.179 27 H -0.188 1.188 28 H -0.189 1.189 29 C -0.217 4.217 30 C -0.038 4.038 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.260 0.740 41 H 0.145 0.855 42 H 0.129 0.871 43 H 0.107 0.893 44 H 0.119 0.881 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.241 -8.699 6.818 13.787 hybrid contribution -1.112 1.427 0.099 1.812 sum 7.129 -7.273 6.917 12.311 Atomic orbital electron populations 1.21878 0.93540 1.02984 1.02395 1.23013 0.95187 0.95987 0.84636 0.90995 1.88894 1.40578 1.67908 1.32964 1.23406 0.87331 0.94686 0.93344 0.90440 1.21781 1.02837 0.96291 0.98889 1.23088 0.97969 0.98193 0.95256 0.87981 1.21716 0.95785 1.02797 0.99681 1.22177 0.93557 0.89847 0.92485 0.88177 1.55393 1.41948 1.59001 1.29326 1.00452 0.73089 0.72410 0.72285 1.93478 1.63612 1.63671 1.78601 1.93477 1.87459 1.40213 1.76983 1.29639 1.19758 1.03746 1.34964 1.20469 0.91624 0.98174 0.91949 1.21329 0.96739 0.94419 1.14120 1.18153 0.93630 0.91886 0.84520 1.20159 0.97847 1.07929 1.24458 0.89298 1.26848 1.01463 0.97330 0.92401 1.69824 1.36737 1.21972 1.14189 0.85089 0.76872 0.77831 0.79650 1.17864 1.18778 1.18865 1.21197 0.92104 0.98936 1.09452 1.20402 0.97093 0.92743 0.93528 0.90961 0.92254 0.92113 0.91932 0.89087 0.91866 0.91846 0.90065 0.92967 0.73992 0.85491 0.87060 0.89349 0.88105 0.86866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.37 71.98 0.67 -3.82 16 2 C 0.07 1.95 3.85 30.97 0.12 2.07 16 3 H 0.07 2.04 7.93 -2.39 -0.02 2.02 16 4 O -0.38 -10.02 10.89 -148.98 -1.62 -11.64 16 5 C 0.07 1.36 3.43 31.27 0.11 1.47 16 6 H 0.08 1.39 8.01 -2.39 -0.02 1.37 16 7 C -0.14 -2.11 9.66 71.98 0.70 -1.42 16 8 C -0.12 -2.56 3.14 -9.50 -0.03 -2.59 16 9 H 0.10 1.95 8.05 -2.39 -0.02 1.94 16 10 C -0.14 -2.66 8.53 71.98 0.61 -2.04 16 11 C 0.13 3.31 3.20 45.98 0.15 3.46 16 12 H 0.10 2.77 7.37 -2.39 -0.02 2.76 16 13 N -1.10 -29.54 3.99 -165.27 -0.66 -30.20 16 14 S 2.72 96.19 5.60 -56.49 -0.32 95.88 16 15 O -1.00 -40.17 17.42 -128.00 -2.23 -42.40 16 16 O -0.99 -37.62 16.80 -128.00 -2.15 -39.77 16 17 C -0.79 -32.65 5.94 22.46 0.13 -32.51 16 18 C 0.00 -0.10 9.50 22.22 0.21 0.11 16 19 C -0.25 -11.24 9.80 22.73 0.22 -11.02 16 20 C 0.12 6.11 5.49 -21.29 -0.12 5.99 16 21 C -0.48 -23.51 9.03 23.46 0.21 -23.30 16 22 H 0.09 4.19 7.89 -2.91 -0.02 4.17 16 23 C 0.04 1.75 5.15 85.26 0.44 2.19 16 24 N -0.80 -38.54 11.29 21.82 0.25 -38.29 16 25 Si 0.99 34.82 29.58 68.60 2.03 36.85 16 26 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 27 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 28 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 29 C -0.20 -9.80 8.65 22.73 0.20 -9.60 16 30 C -0.02 -0.80 9.49 22.22 0.21 -0.58 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.09 7.04 -2.39 -0.02 1.08 16 38 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.05 1.18 8.12 -2.39 -0.02 1.16 16 40 H 0.42 9.34 8.34 -96.75 -0.81 8.53 16 41 H 0.13 4.69 7.47 -2.91 -0.02 4.67 16 42 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.30 12.70 8.30 -92.71 -0.77 11.93 16 44 H 0.10 5.20 6.62 -2.91 -0.02 5.18 16 45 H 0.11 4.70 7.73 -2.91 -0.02 4.68 16 Total: -1.00 -61.34 379.03 -0.68 -62.02 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: 0.19 Total: 39.14 kcal Atomic # 6 Polarization: -75.42 SS G_CDS: 3.84 Total: -71.58 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -0.41 Total: -68.49 kcal Atomic # 8 Polarization: -87.81 SS G_CDS: -6.00 Total: -93.82 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.85 kcal Atomic # 16 Polarization: 96.19 SS G_CDS: -0.32 Total: 95.88 kcal Total: -61.34 -0.68 -62.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647316767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.404 kcal (2) G-P(sol) polarization free energy of solvation -61.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds