Wall clock time and date at job start Tue Mar 31 2020 23:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 110.33368 * 2 1 4 4 O 1.44427 * 110.36622 * 122.24973 * 2 1 3 5 5 C 1.44432 * 105.27432 * 159.45718 * 4 2 1 6 6 H 1.08995 * 110.37195 * 78.31102 * 5 4 2 7 7 C 1.52994 * 110.37195 * 200.65627 * 5 4 2 8 8 C 1.54480 * 104.80056 * 319.48557 * 5 4 2 9 9 H 1.09000 * 110.51349 * 142.75638 * 8 5 4 10 10 C 1.53000 * 110.51387 * 265.33447 * 8 5 4 11 11 C 1.54473 * 110.46866 * 237.68256 * 2 1 3 12 12 H 1.08999 * 110.51124 * 335.79113 * 11 2 1 13 13 N 1.46504 * 110.51188 * 98.49866 * 11 2 1 14 14 S 1.65593 * 120.00431 * 211.15450 * 13 11 2 15 15 O 1.42095 * 106.40436 * 176.19809 * 14 13 11 16 16 O 1.42101 * 106.40090 * 309.12163 * 14 13 11 17 17 C 1.76198 * 107.21905 * 62.65914 * 14 13 11 18 18 C 1.38640 * 119.74990 * 264.40876 * 17 14 13 19 19 C 1.37619 * 120.24777 * 179.76323 * 18 17 14 20 20 C 1.40716 * 119.74495 * 0.48798 * 19 18 17 21 21 C 1.41395 * 120.24457 * 179.79180 * 20 19 18 22 22 H 1.07997 * 120.00322 * 27.51851 * 21 20 19 23 23 C 1.39946 * 119.99676 * 207.52158 * 21 20 19 24 24 N 1.30818 * 120.00319 * 13.87316 * 23 21 20 25 25 Si 1.86804 * 119.99899 * 193.87363 * 23 21 20 26 26 H 1.48506 * 109.47178 * 89.99772 * 25 23 21 27 27 H 1.48497 * 109.47481 * 210.00024 * 25 23 21 28 28 H 1.48502 * 109.47125 * 330.00110 * 25 23 21 29 29 C 1.40716 * 119.51152 * 359.76371 * 20 19 18 30 30 C 1.37622 * 119.74652 * 0.02562 * 29 20 19 31 31 H 1.08994 * 109.47352 * 294.75038 * 1 2 3 32 32 H 1.09005 * 109.47074 * 54.75081 * 1 2 3 33 33 H 1.09004 * 109.46927 * 174.74199 * 1 2 3 34 34 H 1.09012 * 109.46884 * 175.37664 * 7 5 4 35 35 H 1.08996 * 109.47320 * 295.37550 * 7 5 4 36 36 H 1.08995 * 109.47286 * 55.38327 * 7 5 4 37 37 H 1.08999 * 109.47059 * 58.54628 * 10 8 5 38 38 H 1.09002 * 109.47419 * 178.54584 * 10 8 5 39 39 H 1.09000 * 109.46717 * 298.54679 * 10 8 5 40 40 H 0.97005 * 119.99479 * 31.15509 * 13 11 2 41 41 H 1.07996 * 119.87457 * 0.02562 * 18 17 14 42 42 H 1.07995 * 120.12991 * 180.28329 * 19 18 17 43 43 H 0.97005 * 119.99944 * 179.97438 * 24 23 21 44 44 H 1.08003 * 120.12731 * 179.97438 * 29 20 19 45 45 H 1.07999 * 119.87689 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 8 2.0326 -0.7225 1.1451 5 6 3.3882 -1.0840 0.8019 6 1 4.0518 -0.2282 0.9248 7 6 3.8618 -2.2552 1.6649 8 6 3.3208 -1.5033 -0.6834 9 1 4.2150 -1.1758 -1.2137 10 6 3.1516 -3.0190 -0.8056 11 6 2.0702 -0.7737 -1.2230 12 1 1.3314 -1.4928 -1.5768 13 7 2.4397 0.1540 -2.2951 14 16 2.3035 -0.3132 -3.8779 15 8 2.6465 0.8211 -4.6620 16 8 2.9704 -1.5633 -3.9861 17 6 0.5976 -0.6314 -4.1829 18 6 0.1118 -1.9265 -4.0891 19 6 -1.2197 -2.1860 -4.3205 20 6 -2.0870 -1.1322 -4.6633 21 6 -3.4561 -1.3875 -4.9076 22 1 -3.9422 -2.2265 -4.4321 23 6 -4.1812 -0.5529 -5.7656 24 7 -3.5525 0.2870 -6.5469 25 14 -6.0471 -0.6382 -5.7950 26 1 -6.6020 0.3160 -4.8015 27 1 -6.5376 -0.2822 -7.1507 28 1 -6.4850 -2.0161 -5.4562 29 6 -1.5818 0.1775 -4.7608 30 6 -0.2476 0.4143 -4.5208 31 1 -0.3634 0.4302 0.9332 32 1 -0.3633 0.5931 -0.8393 33 1 -0.3633 -1.0234 -0.0942 34 1 4.8536 -2.5690 1.3389 35 1 3.9040 -1.9438 2.7085 36 1 3.1655 -3.0874 1.5619 37 1 2.2430 -3.3260 -0.2877 38 1 3.0801 -3.2930 -1.8582 39 1 4.0112 -3.5177 -0.3578 40 1 2.7641 1.0419 -2.0776 41 1 0.7801 -2.7342 -3.8294 42 1 -1.5970 -3.1949 -4.2424 43 1 -4.0551 0.8653 -7.1419 44 1 -2.2385 0.9937 -5.0236 45 1 0.1425 1.4187 -4.5954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647317013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:33 Heat of formation + Delta-G solvation = -137.814925 kcal Electronic energy + Delta-G solvation = -28485.430137 eV Core-core repulsion = 24593.004367 eV Total energy + Delta-G solvation = -3892.425769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.11610 -39.38931 -38.14098 -36.79412 -35.99415 -35.76775 -34.73326 -32.06101 -31.88069 -31.30238 -29.77474 -27.61888 -27.21478 -24.40936 -23.28814 -23.03177 -22.39567 -20.90566 -20.37608 -19.41337 -18.64808 -18.36106 -18.00907 -17.17497 -16.59633 -16.47965 -16.12789 -15.85859 -15.65815 -15.16377 -14.96227 -14.85855 -14.19901 -14.10713 -13.98487 -13.83971 -13.58402 -13.32040 -13.28036 -13.13251 -13.07726 -13.00500 -12.95718 -12.87186 -12.74087 -12.64640 -12.58100 -12.41562 -12.24554 -11.96425 -11.65028 -11.54673 -11.47173 -11.34848 -11.20441 -10.74356 -10.26775 -9.75981 -9.54616 -8.83749 -6.65568 -0.34338 0.47310 1.05113 1.36362 1.42942 1.51078 2.11481 2.17136 2.52549 2.82571 2.94605 3.47191 3.52638 3.58751 3.64783 3.90818 3.98663 4.10202 4.27493 4.31907 4.34341 4.40590 4.45348 4.61549 4.62578 4.69581 4.86271 4.87644 4.91466 4.96884 5.03056 5.04109 5.10992 5.15889 5.23206 5.25565 5.28125 5.32130 5.46466 5.53297 5.58740 5.75568 5.93269 5.95133 6.13590 6.16538 6.50117 6.69492 6.80766 8.11107 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.003523 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.231369 B = 7945.455689 C = 8726.824371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 H 0.091 0.909 4 O -0.378 6.378 5 C 0.072 3.928 6 H 0.082 0.918 7 C -0.146 4.146 8 C -0.137 4.137 9 H 0.095 0.905 10 C -0.148 4.148 11 C 0.125 3.875 12 H 0.091 0.909 13 N -1.098 6.098 14 S 2.722 3.278 15 O -1.006 7.006 16 O -0.991 6.991 17 C -0.791 4.791 18 C -0.003 4.003 19 C -0.251 4.251 20 C 0.116 3.884 21 C -0.469 4.469 22 H 0.091 0.909 23 C 0.033 3.967 24 N -0.805 5.805 25 Si 0.992 3.008 26 H -0.258 1.258 27 H -0.267 1.267 28 H -0.254 1.254 29 C -0.201 4.201 30 C -0.019 4.019 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.425 0.575 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.297 0.703 44 H 0.109 0.891 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.057 -0.534 13.155 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 H 0.109 0.891 4 O -0.298 6.298 5 C 0.015 3.985 6 H 0.100 0.900 7 C -0.203 4.203 8 C -0.158 4.158 9 H 0.113 0.887 10 C -0.206 4.206 11 C 0.017 3.983 12 H 0.109 0.891 13 N -0.859 5.859 14 S 2.817 3.183 15 O -0.996 6.996 16 O -0.981 6.981 17 C -0.884 4.884 18 C -0.022 4.022 19 C -0.271 4.271 20 C 0.112 3.888 21 C -0.496 4.496 22 H 0.109 0.891 23 C -0.185 4.185 24 N -0.428 5.428 25 Si 0.811 3.189 26 H -0.182 1.182 27 H -0.192 1.192 28 H -0.177 1.177 29 C -0.221 4.221 30 C -0.039 4.039 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.262 0.738 41 H 0.143 0.857 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.581 -0.657 12.524 15.196 hybrid contribution -1.392 0.514 -0.545 1.581 sum 7.189 -0.142 11.978 13.971 Atomic orbital electron populations 1.21815 0.92746 1.02926 1.03082 1.23168 0.95614 0.95888 0.83699 0.89140 1.89159 1.28081 1.74851 1.37673 1.23163 0.84117 0.98383 0.92885 0.90013 1.21904 1.02064 0.96878 0.99465 1.23032 0.98546 0.97395 0.96819 0.88698 1.21918 1.02843 0.93743 1.02051 1.22343 0.96649 0.91078 0.88219 0.89061 1.55361 1.82001 1.25853 1.22644 1.00433 0.73664 0.72140 0.72026 1.93476 1.84476 1.53159 1.68533 1.93471 1.73587 1.44996 1.86045 1.29596 1.24031 1.00831 1.33971 1.20447 0.95188 0.94069 0.92537 1.21273 0.93818 0.98057 1.13982 1.18187 0.93531 0.91689 0.85371 1.20217 0.94853 1.11557 1.22982 0.89057 1.26989 1.06698 0.92388 0.92451 1.69849 1.40948 1.16660 1.15386 0.85041 0.74509 0.80405 0.78918 1.18240 1.19175 1.17730 1.21347 0.95080 0.97169 1.08513 1.20426 0.93479 0.96582 0.93396 0.90651 0.91150 0.92506 0.89453 0.91668 0.91657 0.92289 0.93053 0.89960 0.73844 0.85736 0.87142 0.89219 0.87270 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.57 71.98 0.69 -2.95 16 2 C 0.08 1.74 3.64 31.10 0.11 1.85 16 3 H 0.09 1.77 7.81 -2.39 -0.02 1.75 16 4 O -0.38 -8.93 11.04 -148.98 -1.64 -10.57 16 5 C 0.07 1.37 3.84 31.10 0.12 1.49 16 6 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 7 C -0.15 -2.24 8.37 71.98 0.60 -1.64 16 8 C -0.14 -3.04 3.42 -9.78 -0.03 -3.08 16 9 H 0.09 2.05 7.97 -2.39 -0.02 2.03 16 10 C -0.15 -3.28 7.77 71.98 0.56 -2.72 16 11 C 0.13 3.19 2.85 46.01 0.13 3.32 16 12 H 0.09 2.63 6.75 -2.39 -0.02 2.62 16 13 N -1.10 -29.08 5.49 -165.16 -0.91 -29.98 16 14 S 2.72 98.00 5.67 -56.49 -0.32 97.68 16 15 O -1.01 -41.34 17.40 -128.00 -2.23 -43.57 16 16 O -0.99 -38.45 16.94 -128.00 -2.17 -40.62 16 17 C -0.79 -33.39 5.71 22.46 0.13 -33.26 16 18 C 0.00 -0.11 9.18 22.22 0.20 0.09 16 19 C -0.25 -11.70 9.80 22.73 0.22 -11.47 16 20 C 0.12 5.88 5.55 -21.29 -0.12 5.76 16 21 C -0.47 -23.17 9.06 23.46 0.21 -22.95 16 22 H 0.09 4.25 7.88 -2.91 -0.02 4.23 16 23 C 0.03 1.53 5.20 85.26 0.44 1.97 16 24 N -0.80 -39.27 10.93 21.83 0.24 -39.04 16 25 Si 0.99 34.59 29.58 68.60 2.03 36.62 16 26 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 27 H -0.27 -8.95 7.11 99.48 0.71 -8.25 16 28 H -0.25 -8.57 7.11 99.48 0.71 -7.87 16 29 C -0.20 -10.09 8.67 22.73 0.20 -9.89 16 30 C -0.02 -0.86 9.49 22.22 0.21 -0.65 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.06 1.49 8.03 -2.38 -0.02 1.47 16 34 H 0.09 1.04 7.74 -2.38 -0.02 1.02 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.08 6.66 -2.39 -0.02 1.06 16 37 H 0.06 1.29 7.66 -2.39 -0.02 1.27 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.42 6.79 -2.39 -0.02 1.41 16 40 H 0.42 8.83 8.61 -96.74 -0.83 8.00 16 41 H 0.12 4.76 7.48 -2.91 -0.02 4.74 16 42 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 43 H 0.30 12.95 8.30 -92.70 -0.77 12.18 16 44 H 0.11 5.66 6.24 -2.91 -0.02 5.64 16 45 H 0.11 4.76 7.72 -2.91 -0.02 4.74 16 Total: -1.00 -62.68 374.89 -1.15 -63.83 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: 0.17 Total: 39.76 kcal Atomic # 6 Polarization: -77.80 SS G_CDS: 3.68 Total: -74.12 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -0.67 Total: -69.02 kcal Atomic # 8 Polarization: -88.72 SS G_CDS: -6.04 Total: -94.76 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Atomic # 16 Polarization: 98.00 SS G_CDS: -0.32 Total: 97.68 kcal Total: -62.68 -1.15 -63.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647317013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.985 kcal (2) G-P(sol) polarization free energy of solvation -62.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds