Wall clock time and date at job start Tue Mar 31 2020 22:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47036 * 2 1 4 4 C 1.53008 * 109.46956 * 240.00157 * 2 1 3 5 5 S 1.81400 * 109.47454 * 120.00018 * 2 1 3 6 6 O 1.42101 * 110.54044 * 302.97859 * 5 2 1 7 7 O 1.42098 * 110.54358 * 166.22344 * 5 2 1 8 8 N 1.65604 * 104.44855 * 54.60272 * 5 2 1 9 9 C 1.34778 * 120.00256 * 69.26305 * 8 5 2 10 10 O 1.21275 * 119.99954 * 5.60784 * 9 8 5 11 11 C 1.50696 * 119.99987 * 185.59879 * 9 8 5 12 12 C 1.53001 * 109.46766 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47623 * 304.99775 * 12 11 9 14 14 C 1.50700 * 109.47062 * 65.00584 * 12 11 9 15 15 H 1.07997 * 120.00271 * 31.98747 * 14 12 11 16 16 C 1.37878 * 119.99779 * 211.98817 * 14 12 11 17 17 N 1.31510 * 119.99787 * 187.36150 * 16 14 12 18 18 Si 1.86797 * 120.00189 * 7.63658 * 16 14 12 19 19 H 1.48501 * 109.47038 * 274.98155 * 18 16 14 20 20 H 1.48498 * 109.46954 * 34.98084 * 18 16 14 21 21 H 1.48502 * 109.47306 * 154.97914 * 18 16 14 22 22 C 1.50703 * 109.46769 * 185.00100 * 12 11 9 23 23 C 1.38232 * 120.00554 * 295.96221 * 22 12 11 24 24 C 1.38233 * 120.00353 * 179.78737 * 23 22 12 25 25 C 1.38227 * 119.99841 * 0.44615 * 24 23 22 26 26 C 1.38230 * 120.00217 * 359.80569 * 25 24 23 27 27 C 1.38236 * 120.00019 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.46827 * 299.99464 * 1 2 3 29 29 H 1.08995 * 109.47417 * 60.00248 * 1 2 3 30 30 H 1.09006 * 109.46844 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47260 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47187 * 299.99636 * 3 2 1 33 33 H 1.08993 * 109.47202 * 60.00154 * 3 2 1 34 34 H 1.09000 * 109.47205 * 310.37965 * 4 2 1 35 35 H 1.09000 * 109.46784 * 70.38192 * 4 2 1 36 36 H 1.09006 * 109.46618 * 190.37888 * 4 2 1 37 37 H 0.97006 * 119.99840 * 249.27248 * 8 5 2 38 38 H 1.09002 * 109.46845 * 60.00742 * 11 9 8 39 39 H 1.09000 * 109.47528 * 300.00442 * 11 9 8 40 40 H 0.97002 * 120.00119 * 180.27459 * 17 16 14 41 41 H 1.08011 * 119.99386 * 359.97438 * 23 22 12 42 42 H 1.08007 * 119.99825 * 180.27156 * 24 23 22 43 43 H 1.08003 * 119.99997 * 179.83355 * 25 24 23 44 44 H 1.07999 * 120.00163 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.00162 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 16 2.1347 -0.8551 1.4811 6 8 1.6181 -0.2442 2.6554 7 8 3.5194 -1.1492 1.3567 8 7 1.3967 -2.3368 1.4330 9 6 1.7456 -3.2332 0.4889 10 8 2.6686 -2.9958 -0.2611 11 6 0.9888 -4.5305 0.3653 12 6 1.5824 -5.3605 -0.7747 13 1 1.5853 -4.7701 -1.6909 14 6 2.9947 -5.7545 -0.4264 15 1 3.2689 -5.9266 0.6039 16 6 3.9368 -5.8953 -1.4233 17 7 5.1270 -6.3777 -1.1398 18 14 3.5253 -5.3938 -3.1750 19 1 2.8380 -6.5162 -3.8627 20 1 2.6339 -4.2063 -3.1533 21 1 4.7768 -5.0601 -3.9013 22 6 0.7508 -6.6006 -0.9789 23 6 0.6674 -7.5497 0.0227 24 6 -0.0990 -8.6850 -0.1630 25 6 -0.7745 -8.8758 -1.3538 26 6 -0.6869 -7.9293 -2.3574 27 6 0.0758 -6.7917 -2.1700 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.5334 -1.6814 -1.3468 35 1 1.8357 -0.1117 -2.1295 36 1 3.1142 -0.8844 -1.1616 37 1 0.7133 -2.5596 2.0844 38 1 -0.0599 -4.3206 0.1545 39 1 1.0673 -5.0874 1.2990 40 1 5.7911 -6.4730 -1.8403 41 1 1.1986 -7.4026 0.9515 42 1 -0.1676 -9.4244 0.6213 43 1 -1.3711 -9.7641 -1.5000 44 1 -1.2150 -8.0781 -3.2877 45 1 0.1445 -6.0523 -2.9543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649819680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:14 Heat of formation + Delta-G solvation = -89.394775 kcal Electronic energy + Delta-G solvation = -28799.507732 eV Core-core repulsion = 24909.181618 eV Total energy + Delta-G solvation = -3890.326114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.77959 -38.53175 -37.05764 -36.53974 -35.89583 -34.35748 -33.97901 -31.72782 -30.26626 -29.16509 -27.71585 -27.41175 -26.15212 -22.95860 -21.99874 -21.81881 -21.23997 -19.52930 -19.02722 -17.58582 -17.25437 -17.00063 -16.67496 -16.02384 -15.31584 -14.87033 -14.71073 -14.34079 -14.19075 -14.13065 -13.99621 -13.53280 -13.52128 -12.82172 -12.80977 -12.66988 -12.65748 -12.44410 -12.36280 -12.12052 -12.06067 -11.98246 -11.90229 -11.82007 -11.42304 -11.27137 -11.21970 -10.88070 -10.56630 -10.53279 -10.44024 -10.01916 -9.92565 -9.72200 -9.44707 -9.14931 -8.49993 -8.27693 -7.90048 -6.03697 -4.01620 0.16407 2.03246 2.08182 2.52938 2.79576 3.35870 3.42164 3.42560 3.75076 4.07355 4.25969 4.45304 4.50142 4.56600 4.75054 4.93277 5.19884 5.25134 5.31248 5.35073 5.40623 5.46190 5.48633 5.50460 5.61122 5.69131 5.72335 5.76598 5.77277 5.83665 5.88791 5.96503 6.16810 6.24045 6.34424 6.42067 6.60717 6.74149 6.90409 6.99736 7.08611 7.20348 7.48537 7.63997 7.75121 8.17163 8.46554 8.96161 9.59614 11.09233 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013732 B = 0.004271 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.559611 B = 6554.835677 C = 7208.113784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.550 4.550 3 C -0.136 4.136 4 C -0.135 4.135 5 S 2.592 3.408 6 O -0.959 6.959 7 O -0.919 6.919 8 N -1.061 6.061 9 C 0.523 3.477 10 O -0.440 6.440 11 C -0.118 4.118 12 C 0.047 3.953 13 H 0.056 0.944 14 C -0.494 4.494 15 H 0.074 0.926 16 C 0.088 3.912 17 N -0.892 5.892 18 Si 0.868 3.132 19 H -0.277 1.277 20 H -0.259 1.259 21 H -0.291 1.291 22 C -0.040 4.040 23 C -0.100 4.100 24 C -0.126 4.126 25 C -0.148 4.148 26 C -0.125 4.125 27 C -0.138 4.138 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.427 0.573 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.263 0.737 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.317 9.262 1.575 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.642 4.642 3 C -0.195 4.195 4 C -0.193 4.193 5 S 2.686 3.314 6 O -0.949 6.949 7 O -0.909 6.909 8 N -0.827 5.827 9 C 0.310 3.690 10 O -0.307 6.307 11 C -0.160 4.160 12 C 0.027 3.973 13 H 0.074 0.926 14 C -0.531 4.531 15 H 0.092 0.908 16 C -0.116 4.116 17 N -0.529 5.529 18 Si 0.696 3.304 19 H -0.203 1.203 20 H -0.184 1.184 21 H -0.217 1.217 22 C -0.041 4.041 23 C -0.118 4.118 24 C -0.144 4.144 25 C -0.166 4.166 26 C -0.143 4.143 27 C -0.157 4.157 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.262 0.738 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.794 9.668 1.553 16.111 hybrid contribution -0.731 0.005 -1.203 1.407 sum -13.525 9.672 0.351 16.631 Atomic orbital electron populations 1.21730 0.89677 1.03588 1.04336 1.29973 1.06518 1.08652 1.19008 1.21709 1.02035 0.91327 1.04389 1.21966 1.03767 0.99891 0.93654 1.06023 0.75171 0.74085 0.76086 1.93581 1.81197 1.76219 1.43937 1.93680 1.29573 1.81416 1.86240 1.55189 1.53767 1.32863 1.40923 1.20918 0.83939 0.85835 0.78331 1.90924 1.24397 1.75166 1.40187 1.21818 0.98136 0.92545 1.03525 1.18284 0.94964 0.89290 0.94743 0.92603 1.20611 0.90218 1.46803 0.95458 0.90773 1.24884 0.94754 0.93496 0.98445 1.69884 1.05218 1.44153 1.33637 0.86951 0.78048 0.79732 0.85644 1.20285 1.18419 1.21739 1.20711 0.92138 0.98506 0.92743 1.20975 0.97495 0.93480 0.99846 1.21069 0.98303 0.97774 0.97259 1.20872 1.01965 0.99232 0.94581 1.20955 0.99962 0.94912 0.98436 1.21050 0.98674 0.98104 0.97825 0.90937 0.90287 0.91153 0.90965 0.89894 0.91080 0.90401 0.91353 0.89415 0.73798 0.90227 0.88702 0.92675 0.86120 0.87124 0.87385 0.87342 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.33 37.16 0.31 -0.89 16 2 C -0.55 -6.43 1.05 -90.62 -0.09 -6.52 16 3 C -0.14 -1.33 8.46 37.16 0.31 -1.01 16 4 C -0.14 -1.85 6.88 37.16 0.26 -1.59 16 5 S 2.59 38.57 4.39 -107.50 -0.47 38.10 16 6 O -0.96 -14.80 18.07 -57.54 -1.04 -15.84 16 7 O -0.92 -18.30 16.10 -65.72 -1.06 -19.36 16 8 N -1.06 -14.39 5.02 31.22 0.16 -14.23 16 9 C 0.52 9.06 6.39 -10.99 -0.07 8.99 16 10 O -0.44 -9.49 10.23 -14.55 -0.15 -9.64 16 11 C -0.12 -1.93 4.96 -27.88 -0.14 -2.06 16 12 C 0.05 0.98 1.26 -92.92 -0.12 0.86 16 13 H 0.06 1.23 4.65 -51.93 -0.24 0.99 16 14 C -0.49 -12.96 6.89 -34.44 -0.24 -13.20 16 15 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 16 C 0.09 2.49 5.47 -17.82 -0.10 2.40 16 17 N -0.89 -27.38 13.96 55.43 0.77 -26.61 16 18 Si 0.87 21.79 27.34 -169.99 -4.65 17.14 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.26 -6.12 6.36 56.52 0.36 -5.76 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 22 C -0.04 -0.78 4.76 -104.62 -0.50 -1.28 16 23 C -0.10 -1.83 8.87 -39.59 -0.35 -2.18 16 24 C -0.13 -2.03 10.05 -39.59 -0.40 -2.43 16 25 C -0.15 -2.29 10.05 -39.59 -0.40 -2.69 16 26 C -0.12 -2.01 10.05 -39.59 -0.40 -2.41 16 27 C -0.14 -2.52 9.67 -39.58 -0.38 -2.91 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.57 7.72 -51.93 -0.40 0.17 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.14 5.72 -51.93 -0.30 0.84 16 35 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 36 H 0.09 1.42 7.05 -51.93 -0.37 1.06 16 37 H 0.43 4.05 8.80 -34.47 -0.30 3.74 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.44 7.81 -51.93 -0.41 1.03 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.12 2.18 7.78 -52.48 -0.41 1.77 16 42 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 44 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 45 H 0.11 1.89 7.95 -52.48 -0.42 1.47 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -36.01 373.79 -9.77 -45.78 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.67 Total: 5.96 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -2.30 Total: -26.93 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.93 Total: -40.84 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -2.25 Total: -44.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.65 Total: 17.14 kcal Atomic # 16 Polarization: 38.57 SS G_CDS: -0.47 Total: 38.10 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.01 -9.77 -45.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649819680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.617 kcal (2) G-P(sol) polarization free energy of solvation -36.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds