Wall clock time and date at job start Tue Mar 31 2020 22:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47036 * 2 1 4 4 C 1.53008 * 109.46956 * 240.00157 * 2 1 3 5 5 S 1.81400 * 109.47454 * 120.00018 * 2 1 3 6 6 O 1.42101 * 110.54044 * 302.97859 * 5 2 1 7 7 O 1.42098 * 110.54358 * 166.22344 * 5 2 1 8 8 N 1.65604 * 104.44855 * 54.60272 * 5 2 1 9 9 C 1.34778 * 120.00256 * 69.26305 * 8 5 2 10 10 O 1.21275 * 119.99954 * 5.60784 * 9 8 5 11 11 C 1.50696 * 119.99987 * 185.59879 * 9 8 5 12 12 C 1.53001 * 109.46766 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.47623 * 304.99775 * 12 11 9 14 14 C 1.50700 * 109.47062 * 65.00584 * 12 11 9 15 15 H 1.07997 * 120.00271 * 31.98747 * 14 12 11 16 16 C 1.37878 * 119.99779 * 211.98817 * 14 12 11 17 17 N 1.31510 * 119.99787 * 187.36150 * 16 14 12 18 18 Si 1.86797 * 120.00189 * 7.63658 * 16 14 12 19 19 H 1.48501 * 109.47038 * 274.98155 * 18 16 14 20 20 H 1.48498 * 109.46954 * 34.98084 * 18 16 14 21 21 H 1.48502 * 109.47306 * 154.97914 * 18 16 14 22 22 C 1.50703 * 109.46769 * 185.00100 * 12 11 9 23 23 C 1.38232 * 120.00554 * 295.96221 * 22 12 11 24 24 C 1.38233 * 120.00353 * 179.78737 * 23 22 12 25 25 C 1.38227 * 119.99841 * 0.44615 * 24 23 22 26 26 C 1.38230 * 120.00217 * 359.80569 * 25 24 23 27 27 C 1.38236 * 120.00019 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.46827 * 299.99464 * 1 2 3 29 29 H 1.08995 * 109.47417 * 60.00248 * 1 2 3 30 30 H 1.09006 * 109.46844 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47260 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47187 * 299.99636 * 3 2 1 33 33 H 1.08993 * 109.47202 * 60.00154 * 3 2 1 34 34 H 1.09000 * 109.47205 * 310.37965 * 4 2 1 35 35 H 1.09000 * 109.46784 * 70.38192 * 4 2 1 36 36 H 1.09006 * 109.46618 * 190.37888 * 4 2 1 37 37 H 0.97006 * 119.99840 * 249.27248 * 8 5 2 38 38 H 1.09002 * 109.46845 * 60.00742 * 11 9 8 39 39 H 1.09000 * 109.47528 * 300.00442 * 11 9 8 40 40 H 0.97002 * 120.00119 * 180.27459 * 17 16 14 41 41 H 1.08011 * 119.99386 * 359.97438 * 23 22 12 42 42 H 1.08007 * 119.99825 * 180.27156 * 24 23 22 43 43 H 1.08003 * 119.99997 * 179.83355 * 25 24 23 44 44 H 1.07999 * 120.00163 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.00162 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 16 2.1347 -0.8551 1.4811 6 8 1.6181 -0.2442 2.6554 7 8 3.5194 -1.1492 1.3567 8 7 1.3967 -2.3368 1.4330 9 6 1.7456 -3.2332 0.4889 10 8 2.6686 -2.9958 -0.2611 11 6 0.9888 -4.5305 0.3653 12 6 1.5824 -5.3605 -0.7747 13 1 1.5853 -4.7701 -1.6909 14 6 2.9947 -5.7545 -0.4264 15 1 3.2689 -5.9266 0.6039 16 6 3.9368 -5.8953 -1.4233 17 7 5.1270 -6.3777 -1.1398 18 14 3.5253 -5.3938 -3.1750 19 1 2.8380 -6.5162 -3.8627 20 1 2.6339 -4.2063 -3.1533 21 1 4.7768 -5.0601 -3.9013 22 6 0.7508 -6.6006 -0.9789 23 6 0.6674 -7.5497 0.0227 24 6 -0.0990 -8.6850 -0.1630 25 6 -0.7745 -8.8758 -1.3538 26 6 -0.6869 -7.9293 -2.3574 27 6 0.0758 -6.7917 -2.1700 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.5334 -1.6814 -1.3468 35 1 1.8357 -0.1117 -2.1295 36 1 3.1142 -0.8844 -1.1616 37 1 0.7133 -2.5596 2.0844 38 1 -0.0599 -4.3206 0.1545 39 1 1.0673 -5.0874 1.2990 40 1 5.7911 -6.4730 -1.8403 41 1 1.1986 -7.4026 0.9515 42 1 -0.1676 -9.4244 0.6213 43 1 -1.3711 -9.7641 -1.5000 44 1 -1.2150 -8.0781 -3.2877 45 1 0.1445 -6.0523 -2.9543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649819680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:13 Heat of formation + Delta-G solvation = -114.975289 kcal Electronic energy + Delta-G solvation = -28800.616986 eV Core-core repulsion = 24909.181618 eV Total energy + Delta-G solvation = -3891.435368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.18396 -39.87561 -38.31929 -37.47167 -37.20486 -35.95116 -35.34285 -33.69842 -31.56908 -30.49515 -28.51244 -28.34310 -27.91240 -24.59270 -23.31459 -22.86923 -22.52555 -21.00720 -20.26658 -19.05708 -18.82755 -18.42641 -17.86680 -17.31160 -16.56387 -16.40094 -16.23507 -15.70130 -15.49308 -15.12515 -15.08391 -15.04012 -14.65560 -14.52206 -14.13465 -14.07226 -13.81324 -13.64696 -13.46015 -13.35513 -13.32148 -13.26219 -13.14444 -12.93554 -12.77254 -12.75866 -12.23711 -12.20911 -12.06509 -11.86257 -11.80647 -11.73123 -11.49999 -11.04431 -11.01485 -10.85909 -10.61859 -9.59315 -9.28884 -8.20669 -6.18052 -0.99131 0.71319 0.75728 1.27882 1.32206 1.37976 1.43962 1.48534 2.41640 2.60767 3.00282 3.09385 3.23721 3.35528 3.50250 3.70209 3.89450 4.11594 4.19375 4.29842 4.34088 4.46172 4.50801 4.51387 4.55508 4.63710 4.65256 4.70678 4.73332 4.77626 4.87107 4.88996 5.03969 5.05410 5.15855 5.21664 5.26544 5.39622 5.43042 5.69535 5.79804 5.83240 5.89582 6.04564 6.35215 6.39064 6.81450 6.86094 7.45764 8.96702 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013732 B = 0.004271 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.559611 B = 6554.835677 C = 7208.113784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.521 4.521 3 C -0.145 4.145 4 C -0.137 4.137 5 S 2.582 3.418 6 O -0.969 6.969 7 O -0.982 6.982 8 N -1.045 6.045 9 C 0.526 3.474 10 O -0.489 6.489 11 C -0.116 4.116 12 C 0.047 3.953 13 H 0.049 0.951 14 C -0.470 4.470 15 H 0.034 0.966 16 C 0.021 3.979 17 N -0.954 5.954 18 Si 0.919 3.081 19 H -0.264 1.264 20 H -0.237 1.237 21 H -0.305 1.305 22 C -0.062 4.062 23 C -0.119 4.119 24 C -0.127 4.127 25 C -0.141 4.141 26 C -0.124 4.124 27 C -0.152 4.152 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.445 0.555 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.258 0.742 41 H 0.109 0.891 42 H 0.136 0.864 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.015 9.749 0.361 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.616 4.616 3 C -0.203 4.203 4 C -0.195 4.195 5 S 2.681 3.319 6 O -0.959 6.959 7 O -0.972 6.972 8 N -0.813 5.813 9 C 0.313 3.687 10 O -0.359 6.359 11 C -0.158 4.158 12 C 0.027 3.973 13 H 0.067 0.933 14 C -0.508 4.508 15 H 0.052 0.948 16 C -0.175 4.175 17 N -0.595 5.595 18 Si 0.745 3.255 19 H -0.189 1.189 20 H -0.161 1.161 21 H -0.232 1.232 22 C -0.062 4.062 23 C -0.137 4.137 24 C -0.145 4.145 25 C -0.159 4.159 26 C -0.142 4.142 27 C -0.170 4.170 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.284 0.716 38 H 0.147 0.853 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.128 0.872 42 H 0.154 0.846 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.555 10.140 0.420 20.278 hybrid contribution 0.582 -0.157 -0.735 0.951 sum -16.973 9.983 -0.316 19.694 Atomic orbital electron populations 1.21908 0.86628 1.04954 1.06347 1.29723 1.08731 1.08616 1.14574 1.21898 1.01705 0.90117 1.06622 1.21943 1.01562 1.00353 0.95646 1.06203 0.74132 0.74279 0.77314 1.93557 1.80814 1.76035 1.45498 1.93611 1.33631 1.82495 1.87473 1.54805 1.53708 1.32257 1.40520 1.21118 0.83184 0.86292 0.78077 1.90926 1.26432 1.76182 1.42321 1.21810 1.00359 0.91375 1.02264 1.18180 0.92383 0.90774 0.95945 0.93340 1.20880 0.93105 1.43618 0.93167 0.94818 1.25676 0.94784 0.94506 1.02565 1.70054 1.06793 1.48068 1.34566 0.86130 0.77591 0.80532 0.81244 1.18943 1.16101 1.23249 1.20456 0.93846 0.97845 0.94094 1.21026 0.98535 0.94615 0.99505 1.21383 0.97293 0.97251 0.98533 1.21324 1.01033 0.99967 0.93591 1.21334 0.99113 0.93913 0.99848 1.21224 0.99234 0.99343 0.97191 0.89334 0.87870 0.90259 0.91975 0.86962 0.89521 0.91305 0.88564 0.92892 0.71574 0.85275 0.87743 0.93363 0.87247 0.84638 0.83873 0.84262 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.33 71.98 0.60 -1.34 16 2 C -0.52 -11.21 1.05 -10.79 -0.01 -11.22 16 3 C -0.14 -2.50 8.46 71.98 0.61 -1.89 16 4 C -0.14 -3.62 6.88 71.98 0.50 -3.13 16 5 S 2.58 77.15 4.39 -56.49 -0.25 76.90 16 6 O -0.97 -29.29 18.07 -127.65 -2.31 -31.60 16 7 O -0.98 -41.54 16.10 -119.83 -1.93 -43.47 16 8 N -1.04 -27.79 5.02 -173.54 -0.87 -28.66 16 9 C 0.53 18.21 6.39 87.66 0.56 18.77 16 10 O -0.49 -21.79 10.23 16.21 0.17 -21.62 16 11 C -0.12 -3.67 4.96 29.85 0.15 -3.52 16 12 C 0.05 1.94 1.26 -12.28 -0.02 1.93 16 13 H 0.05 2.09 4.65 -2.39 -0.01 2.08 16 14 C -0.47 -25.70 6.89 25.60 0.18 -25.52 16 15 H 0.03 2.06 8.06 -2.91 -0.02 2.03 16 16 C 0.02 1.26 5.47 84.66 0.46 1.72 16 17 N -0.95 -62.18 13.96 21.45 0.30 -61.88 16 18 Si 0.92 46.08 27.34 68.60 1.88 47.96 16 19 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.24 -10.88 6.36 99.48 0.63 -10.25 16 21 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 22 C -0.06 -2.33 4.76 -19.87 -0.09 -2.42 16 23 C -0.12 -4.22 8.87 22.27 0.20 -4.02 16 24 C -0.13 -3.72 10.05 22.27 0.22 -3.50 16 25 C -0.14 -3.74 10.05 22.27 0.22 -3.52 16 26 C -0.12 -3.50 10.05 22.27 0.22 -3.27 16 27 C -0.15 -5.13 9.67 22.27 0.22 -4.91 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 0.97 7.72 -2.38 -0.02 0.96 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.95 5.72 -2.39 -0.01 1.93 16 35 H 0.10 1.97 8.11 -2.39 -0.02 1.95 16 36 H 0.05 1.79 7.05 -2.38 -0.02 1.77 16 37 H 0.45 7.80 8.80 -96.74 -0.85 6.95 16 38 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.10 3.11 7.81 -2.39 -0.02 3.09 16 40 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 41 H 0.11 4.02 7.78 -2.90 -0.02 3.99 16 42 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 43 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 44 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 45 H 0.11 3.64 7.95 -2.91 -0.02 3.62 16 Total: -1.00 -85.27 373.79 1.07 -84.20 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.07 Total: 24.02 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 4.01 Total: -45.85 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -0.57 Total: -90.54 kcal Atomic # 8 Polarization: -92.62 SS G_CDS: -4.07 Total: -96.69 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.88 Total: 47.96 kcal Atomic # 16 Polarization: 77.15 SS G_CDS: -0.25 Total: 76.90 kcal Total: -85.27 1.07 -84.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649819680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.773 kcal (2) G-P(sol) polarization free energy of solvation -85.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds