Wall clock time and date at job start Tue Mar 31 2020 22:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46789 * 2 1 4 4 C 1.52999 * 109.46870 * 240.00588 * 2 1 3 5 5 S 1.81398 * 109.47214 * 120.00075 * 2 1 3 6 6 O 1.42092 * 110.54422 * 302.88424 * 5 2 1 7 7 O 1.42098 * 110.54132 * 166.12906 * 5 2 1 8 8 N 1.65601 * 104.44977 * 54.50958 * 5 2 1 9 9 C 1.34775 * 120.00202 * 70.01800 * 8 5 2 10 10 O 1.21281 * 119.99770 * 5.35364 * 9 8 5 11 11 C 1.50696 * 120.00155 * 185.35126 * 9 8 5 12 12 C 1.53000 * 109.47409 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46948 * 53.63432 * 12 11 9 14 14 C 1.50701 * 109.47116 * 293.63782 * 12 11 9 15 15 H 1.08003 * 119.99952 * 325.99748 * 14 12 11 16 16 C 1.37882 * 120.00067 * 145.99281 * 14 12 11 17 17 N 1.31521 * 119.99642 * 180.57715 * 16 14 12 18 18 Si 1.86790 * 120.00090 * 0.57898 * 16 14 12 19 19 H 1.48497 * 109.47595 * 266.57338 * 18 16 14 20 20 H 1.48505 * 109.47002 * 26.57057 * 18 16 14 21 21 H 1.48500 * 109.47274 * 146.56968 * 18 16 14 22 22 C 1.50694 * 109.47640 * 173.63772 * 12 11 9 23 23 C 1.38235 * 120.00008 * 60.97567 * 22 12 11 24 24 C 1.38236 * 120.00196 * 179.81126 * 23 22 12 25 25 C 1.38241 * 119.99786 * 0.40022 * 24 23 22 26 26 C 1.38233 * 119.99643 * 359.85487 * 25 24 23 27 27 C 1.38231 * 120.00495 * 359.95935 * 26 25 24 28 28 H 1.09001 * 109.47017 * 299.99565 * 1 2 3 29 29 H 1.08994 * 109.47258 * 59.99800 * 1 2 3 30 30 H 1.09005 * 109.46765 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46500 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47601 * 299.99717 * 3 2 1 33 33 H 1.08996 * 109.47413 * 60.00436 * 3 2 1 34 34 H 1.09002 * 109.46910 * 309.98646 * 4 2 1 35 35 H 1.08990 * 109.47808 * 69.98538 * 4 2 1 36 36 H 1.09004 * 109.47347 * 189.99125 * 4 2 1 37 37 H 0.96999 * 119.99868 * 250.02629 * 8 5 2 38 38 H 1.08996 * 109.47281 * 60.00214 * 11 9 8 39 39 H 1.09007 * 109.47183 * 299.99902 * 11 9 8 40 40 H 0.97001 * 119.99603 * 180.02562 * 17 16 14 41 41 H 1.08004 * 120.00148 * 0.02562 * 23 22 12 42 42 H 1.08000 * 120.00398 * 180.22902 * 24 23 22 43 43 H 1.07998 * 119.99730 * 179.82736 * 25 24 23 44 44 H 1.08002 * 119.99493 * 179.97438 * 26 25 24 45 45 H 1.08002 * 119.99750 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 16 2.1347 -0.8551 1.4811 6 8 1.6199 -0.2430 2.6555 7 8 3.5189 -1.1511 1.3557 8 7 1.3947 -2.3359 1.4344 9 6 1.7524 -3.2388 0.5000 10 8 2.6812 -3.0058 -0.2443 11 6 0.9983 -4.5380 0.3799 12 6 1.6022 -5.3759 -0.7488 13 1 2.6741 -5.4873 -0.5850 14 6 1.3646 -4.6874 -2.0680 15 1 0.4585 -4.1212 -2.2262 16 6 2.3038 -4.7801 -3.0732 17 7 2.1015 -4.1697 -4.2205 18 14 3.8635 -5.7725 -2.8054 19 1 4.9429 -4.8765 -2.3184 20 1 3.6084 -6.8332 -1.7979 21 1 4.2791 -6.3969 -4.0871 22 6 0.9530 -6.7357 -0.7678 23 6 -0.4079 -6.8489 -0.9820 24 6 -1.0029 -8.0965 -1.0034 25 6 -0.2382 -9.2304 -0.8022 26 6 1.1218 -9.1168 -0.5827 27 6 1.7174 -7.8695 -0.5652 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5384 -1.6844 -1.3430 35 1 1.8295 -0.1148 -2.1302 36 1 3.1153 -0.8782 -1.1648 37 1 0.7038 -2.5533 2.0795 38 1 -0.0488 -4.3313 0.1591 39 1 1.0701 -5.0878 1.3185 40 1 2.7621 -4.2353 -4.9278 41 1 -1.0059 -5.9628 -1.1363 42 1 -2.0656 -8.1852 -1.1745 43 1 -0.7035 -10.2049 -0.8160 44 1 1.7191 -10.0027 -0.4251 45 1 2.7801 -7.7810 -0.3941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649819682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:18 Heat of formation + Delta-G solvation = -90.891179 kcal Electronic energy + Delta-G solvation = -28916.578528 eV Core-core repulsion = 25026.187525 eV Total energy + Delta-G solvation = -3890.391003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.76521 -38.53508 -37.02967 -36.35341 -35.88838 -34.36736 -33.97344 -31.77129 -30.27752 -29.14996 -27.56128 -27.13451 -26.15630 -22.96136 -22.03362 -21.67068 -21.21810 -19.52333 -19.01666 -17.56056 -17.14827 -17.10286 -16.50143 -16.05761 -15.25776 -14.85453 -14.66709 -14.31269 -14.08364 -14.04111 -13.91321 -13.57006 -13.40644 -12.85633 -12.77346 -12.66704 -12.47374 -12.41305 -12.15744 -12.12540 -12.00534 -11.93983 -11.83602 -11.73084 -11.23046 -11.09786 -11.02256 -10.77923 -10.65347 -10.47494 -10.41740 -10.00537 -9.81747 -9.64983 -9.50594 -9.20189 -8.53031 -8.25545 -7.87802 -6.09157 -4.08502 0.23185 2.04174 2.08424 2.57480 2.79225 3.38409 3.42215 3.48223 3.79046 4.19334 4.41745 4.45014 4.51093 4.65502 4.92957 4.96410 5.22699 5.36282 5.40145 5.46762 5.47366 5.48971 5.52711 5.62504 5.69627 5.78579 5.82665 5.87520 5.96710 5.98911 6.09964 6.17067 6.23955 6.24246 6.41969 6.61516 6.74451 6.77607 6.90654 7.00752 7.09322 7.20776 7.48669 7.62620 7.73224 8.17676 8.40347 8.87864 9.55253 11.02479 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.004322 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.595328 B = 6476.628059 C = 7232.359703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.544 4.544 3 C -0.136 4.136 4 C -0.134 4.134 5 S 2.593 3.407 6 O -0.962 6.962 7 O -0.929 6.929 8 N -1.061 6.061 9 C 0.524 3.476 10 O -0.442 6.442 11 C -0.118 4.118 12 C 0.052 3.948 13 H 0.053 0.947 14 C -0.497 4.497 15 H 0.074 0.926 16 C 0.089 3.911 17 N -0.893 5.893 18 Si 0.862 3.138 19 H -0.274 1.274 20 H -0.251 1.251 21 H -0.294 1.294 22 C -0.039 4.039 23 C -0.104 4.104 24 C -0.127 4.127 25 C -0.149 4.149 26 C -0.126 4.126 27 C -0.135 4.135 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.427 0.573 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.263 0.737 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 3.123 10.027 12.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.637 4.637 3 C -0.195 4.195 4 C -0.191 4.191 5 S 2.688 3.312 6 O -0.952 6.952 7 O -0.919 6.919 8 N -0.828 5.828 9 C 0.310 3.690 10 O -0.308 6.308 11 C -0.161 4.161 12 C 0.032 3.968 13 H 0.071 0.929 14 C -0.534 4.534 15 H 0.092 0.908 16 C -0.114 4.114 17 N -0.530 5.530 18 Si 0.690 3.310 19 H -0.199 1.199 20 H -0.175 1.175 21 H -0.221 1.221 22 C -0.040 4.040 23 C -0.122 4.122 24 C -0.145 4.145 25 C -0.167 4.167 26 C -0.144 4.144 27 C -0.153 4.153 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.262 0.738 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.536 3.614 9.897 11.471 hybrid contribution 0.060 -0.593 -0.425 0.732 sum -4.477 3.022 9.472 10.903 Atomic orbital electron populations 1.21725 0.89653 1.03754 1.04142 1.29933 1.06557 1.08321 1.18844 1.21720 1.01840 0.91595 1.04319 1.21960 1.03257 1.01015 0.92902 1.05974 0.75021 0.74045 0.76181 1.93572 1.81191 1.76098 1.44351 1.93633 1.30059 1.81676 1.86565 1.55186 1.53104 1.32973 1.41493 1.20918 0.84168 0.86185 0.77730 1.90940 1.25323 1.76202 1.38382 1.21835 1.00718 0.92317 1.01202 1.18204 0.95929 0.87916 0.94708 0.92860 1.20590 1.06369 1.31236 0.95165 0.90831 1.24863 0.97540 0.94262 0.94734 1.69873 1.35667 1.42853 1.04626 0.87093 0.84704 0.81423 0.77780 1.19940 1.17542 1.22112 1.20669 0.93456 0.96681 0.93147 1.20933 0.94939 0.96785 0.99586 1.21044 0.99096 0.93063 1.01305 1.20873 0.94236 0.97815 1.03786 1.20980 0.94889 0.97029 1.01505 1.21219 0.99661 0.92464 1.01956 0.91270 0.90132 0.90982 0.91158 0.89779 0.91298 0.88750 0.91355 0.90145 0.73840 0.88688 0.90255 0.92738 0.86334 0.87211 0.87439 0.87379 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 8.34 37.16 0.31 -1.16 16 2 C -0.54 -7.27 1.05 -90.62 -0.09 -7.36 16 3 C -0.14 -1.52 8.46 37.16 0.31 -1.21 16 4 C -0.13 -2.22 6.89 37.16 0.26 -1.97 16 5 S 2.59 39.35 4.39 -107.50 -0.47 38.88 16 6 O -0.96 -15.03 18.07 -57.54 -1.04 -16.07 16 7 O -0.93 -18.00 16.07 -65.79 -1.06 -19.06 16 8 N -1.06 -14.42 5.01 31.22 0.16 -14.27 16 9 C 0.52 9.02 6.40 -10.99 -0.07 8.95 16 10 O -0.44 -9.52 10.35 -14.76 -0.15 -9.67 16 11 C -0.12 -1.91 4.89 -27.88 -0.14 -2.05 16 12 C 0.05 1.07 1.19 -92.93 -0.11 0.96 16 13 H 0.05 1.19 4.94 -51.93 -0.26 0.93 16 14 C -0.50 -12.24 7.13 -34.44 -0.25 -12.49 16 15 H 0.07 1.93 8.06 -52.48 -0.42 1.50 16 16 C 0.09 2.43 5.47 -17.81 -0.10 2.33 16 17 N -0.89 -25.91 13.96 55.43 0.77 -25.13 16 18 Si 0.86 21.29 27.00 -169.99 -4.59 16.70 16 19 H -0.27 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.25 -5.66 4.08 56.52 0.23 -5.43 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 C -0.04 -0.75 4.63 -104.63 -0.48 -1.23 16 23 C -0.10 -1.85 8.87 -39.58 -0.35 -2.20 16 24 C -0.13 -2.01 10.05 -39.58 -0.40 -2.40 16 25 C -0.15 -2.29 10.05 -39.58 -0.40 -2.69 16 26 C -0.13 -2.05 10.05 -39.59 -0.40 -2.45 16 27 C -0.13 -2.50 8.71 -39.58 -0.34 -2.85 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.76 7.72 -51.93 -0.40 0.36 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.78 5.74 -51.93 -0.30 1.49 16 35 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 36 H 0.08 1.49 7.10 -51.93 -0.37 1.12 16 37 H 0.43 4.02 8.80 -34.47 -0.30 3.71 16 38 H 0.09 1.34 7.67 -51.93 -0.40 0.94 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.12 2.00 7.70 -52.48 -0.40 1.60 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.11 2.12 6.55 -52.49 -0.34 1.77 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -33.78 369.04 -9.80 -43.58 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.73 Total: 7.29 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -2.25 Total: -27.81 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.93 Total: -39.40 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -2.25 Total: -44.80 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.59 Total: 16.70 kcal Atomic # 16 Polarization: 39.35 SS G_CDS: -0.47 Total: 38.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.78 -9.80 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649819682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.314 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds