Wall clock time and date at job start Tue Mar 31 2020 23:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42905 * 113.99998 * 2 1 4 4 C 1.52994 * 112.84820 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47179 * 173.80173 * 4 3 2 6 6 C 1.52998 * 109.47361 * 293.80231 * 4 3 2 7 7 N 1.46501 * 109.47312 * 53.80481 * 4 3 2 8 8 S 1.65599 * 120.00133 * 145.00339 * 7 4 3 9 9 O 1.42095 * 106.40526 * 178.53801 * 8 7 4 10 10 O 1.42110 * 106.39958 * 311.45341 * 8 7 4 11 11 C 1.76201 * 107.22298 * 64.99307 * 8 7 4 12 12 C 1.38624 * 119.75027 * 269.73268 * 11 8 7 13 13 C 1.37621 * 120.24978 * 179.71888 * 12 11 8 14 14 C 1.40721 * 119.74008 * 0.57176 * 13 12 11 15 15 C 1.41394 * 120.24249 * 179.68492 * 14 13 12 16 16 H 1.08008 * 119.99703 * 204.39641 * 15 14 13 17 17 C 1.39942 * 120.00311 * 24.39744 * 15 14 13 18 18 N 1.30821 * 120.00237 * 17.85827 * 17 15 14 19 19 Si 1.86800 * 119.99946 * 197.86151 * 17 15 14 20 20 H 1.48501 * 109.47194 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47500 * 120.00027 * 19 17 15 22 22 H 1.48503 * 109.46945 * 239.99664 * 19 17 15 23 23 C 1.40712 * 119.51342 * 359.69833 * 14 13 12 24 24 C 1.37619 * 119.74356 * 0.02562 * 23 14 13 25 25 C 1.53779 * 113.68611 * 311.26889 * 3 2 1 26 26 C 1.53781 * 87.08227 * 89.12853 * 25 3 2 27 27 C 1.53779 * 113.61250 * 48.80428 * 3 2 1 28 28 H 1.08998 * 109.46589 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46695 * 300.00195 * 1 2 3 30 30 H 1.09001 * 109.46856 * 59.99752 * 1 2 3 31 31 H 1.09004 * 109.47576 * 180.02562 * 6 4 3 32 32 H 1.09005 * 109.46818 * 300.00363 * 6 4 3 33 33 H 1.09000 * 109.47022 * 59.99846 * 6 4 3 34 34 H 0.97003 * 119.99906 * 324.99533 * 7 4 3 35 35 H 1.08003 * 119.87964 * 359.97438 * 12 11 8 36 36 H 1.08000 * 120.13587 * 180.27960 * 13 12 11 37 37 H 0.96992 * 120.00351 * 179.97438 * 18 17 15 38 38 H 1.08004 * 120.13232 * 179.97438 * 23 14 13 39 39 H 1.08008 * 119.87945 * 179.97438 * 24 23 14 40 40 H 1.09005 * 113.61113 * 203.67407 * 25 3 2 41 41 H 1.08994 * 113.61910 * 334.57350 * 25 3 2 42 42 H 1.08999 * 113.61090 * 270.88024 * 26 25 3 43 43 H 1.08999 * 113.61311 * 139.97779 * 26 25 3 44 44 H 1.08990 * 113.61589 * 25.34588 * 27 3 2 45 45 H 1.08997 * 113.61007 * 156.25665 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5399 1.2748 -0.0006 5 1 3.9237 2.2889 -0.1116 6 6 4.0387 0.6822 1.3188 7 7 4.0114 0.4496 -1.1156 8 16 5.4031 0.8559 -1.9158 9 8 5.6039 -0.1443 -2.9049 10 8 5.3015 2.2404 -2.2199 11 6 6.7306 0.6947 -0.7684 12 6 7.1069 1.7816 0.0053 13 6 8.1385 1.6655 0.9088 14 6 8.8199 0.4409 1.0368 15 6 9.8856 0.3118 1.9570 16 1 10.6453 -0.4400 1.8013 17 6 9.9562 1.1580 3.0693 18 7 8.8950 1.8165 3.4586 19 14 11.5658 1.3472 3.9983 20 1 12.6071 0.5012 3.3618 21 1 11.9932 2.7690 3.9638 22 1 11.3765 0.9214 5.4083 23 6 8.4329 -0.6540 0.2422 24 6 7.3947 -0.5165 -0.6506 25 6 1.4130 2.2477 -1.0585 26 6 0.3746 2.6522 0.0013 27 6 1.4130 2.2457 1.0603 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 5.1285 0.6607 1.3186 32 1 3.6879 1.2962 2.1484 33 1 3.6550 -0.3319 1.4298 34 1 3.5083 -0.3347 -1.3851 35 1 6.5859 2.7220 -0.0983 36 1 8.4272 2.5122 1.5139 37 1 8.9438 2.4027 4.2298 38 1 8.9492 -1.5983 0.3319 39 1 7.0962 -1.3554 -1.2620 40 1 2.0810 3.0592 -1.3473 41 1 0.9835 1.7268 -1.9142 42 1 -0.5169 2.0250 0.0006 43 1 0.1440 3.7175 0.0022 44 1 0.9835 1.7232 1.9149 45 1 2.0809 3.0566 1.3506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649836510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:42 Heat of formation + Delta-G solvation = -80.361085 kcal Electronic energy + Delta-G solvation = -28432.875261 eV Core-core repulsion = 24542.940878 eV Total energy + Delta-G solvation = -3889.934384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.70822 -37.58062 -36.48388 -35.52454 -35.07847 -34.77914 -34.02358 -30.27387 -29.68213 -29.43525 -27.56015 -25.81088 -25.79550 -24.40360 -21.50558 -21.46847 -21.08991 -20.08942 -18.75014 -17.60620 -17.21184 -16.91852 -16.34200 -15.93141 -15.50417 -15.22052 -15.08464 -14.44270 -14.11347 -13.63177 -13.60616 -13.39805 -13.35044 -13.19060 -12.57993 -12.40734 -12.32826 -12.19641 -12.17623 -11.95994 -11.65897 -11.47160 -11.42955 -11.37204 -11.24915 -11.19455 -11.10360 -10.88035 -10.86453 -10.54937 -10.38148 -10.12198 -9.74290 -9.61913 -9.48833 -9.46818 -8.91667 -7.92742 -7.68093 -7.13816 -4.78665 1.32016 2.26706 2.88208 2.90857 2.94320 2.95875 3.52594 3.67196 3.80614 4.24480 4.36617 4.42750 4.58522 4.61993 4.71978 5.09783 5.18467 5.24717 5.25214 5.40305 5.46162 5.47849 5.58437 5.64144 5.65490 5.77461 5.82512 5.83885 5.91306 6.09968 6.13349 6.14993 6.25709 6.47438 6.69392 6.72658 6.75808 6.93694 7.06740 7.16575 7.35286 7.43924 7.48675 7.65470 7.78788 7.98628 8.33288 8.53045 8.66488 9.77539 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.003495 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.871653 B = 8010.595375 C = 8982.039966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.352 6.352 3 C 0.095 3.905 4 C 0.183 3.817 5 H 0.100 0.900 6 C -0.174 4.174 7 N -1.116 6.116 8 S 2.691 3.309 9 O -0.987 6.987 10 O -0.987 6.987 11 C -0.784 4.784 12 C -0.016 4.016 13 C -0.182 4.182 14 C 0.140 3.860 15 C -0.436 4.436 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.766 5.766 19 Si 0.915 3.085 20 H -0.257 1.257 21 H -0.268 1.268 22 H -0.271 1.271 23 C -0.239 4.239 24 C 0.004 3.996 25 C -0.165 4.165 26 C -0.162 4.162 27 C -0.161 4.161 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.414 0.586 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.288 0.712 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.675 1.070 -0.204 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.270 6.270 3 C 0.054 3.946 4 C 0.075 3.925 5 H 0.118 0.882 6 C -0.233 4.233 7 N -0.871 5.871 8 S 2.790 3.210 9 O -0.978 6.978 10 O -0.977 6.977 11 C -0.880 4.880 12 C -0.036 4.036 13 C -0.202 4.202 14 C 0.136 3.864 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.149 4.149 18 N -0.388 5.388 19 Si 0.738 3.262 20 H -0.180 1.180 21 H -0.193 1.193 22 H -0.196 1.196 23 C -0.259 4.259 24 C -0.016 4.016 25 C -0.203 4.203 26 C -0.199 4.199 27 C -0.199 4.199 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.248 0.752 35 H 0.120 0.880 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.554 1.491 -0.878 13.664 hybrid contribution 0.479 -0.186 1.175 1.283 sum -13.076 1.305 0.297 13.144 Atomic orbital electron populations 1.23053 0.81830 1.02331 1.00234 1.87911 1.19205 1.25592 1.94335 1.22816 0.92944 0.83104 0.95757 1.20609 0.89772 0.94986 0.87134 0.88232 1.22337 1.03683 1.01677 0.95605 1.55652 1.43323 1.40246 1.47901 1.01257 0.72990 0.72898 0.73873 1.93485 1.85867 1.60704 1.57750 1.93475 1.86810 1.33732 1.83678 1.29149 1.26199 1.03143 1.29545 1.20223 0.95907 0.94705 0.92799 1.21321 0.99760 0.98243 1.00876 1.17843 0.89366 0.90465 0.88678 1.19968 1.07459 1.14235 1.04666 0.89479 1.26109 0.98046 0.93309 0.97402 1.69814 1.28907 1.19158 1.20948 0.86132 0.81387 0.79537 0.79111 1.18008 1.19251 1.19563 1.21041 1.02428 0.98208 1.04257 1.20154 0.93715 0.93810 0.93921 1.23613 0.98862 1.00212 0.97619 1.23328 0.97707 1.02093 0.96751 1.23551 0.98829 0.99971 0.97578 0.89968 0.93426 0.93440 0.90045 0.92103 0.91767 0.75204 0.88044 0.86028 0.90102 0.88284 0.87844 0.88369 0.90849 0.89177 0.91062 0.90601 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.17 101.05 0.93 1.12 16 2 O -0.35 -4.35 9.97 -35.23 -0.35 -4.70 16 3 C 0.10 1.17 1.06 -89.81 -0.10 1.07 16 4 C 0.18 2.67 2.50 -67.93 -0.17 2.50 16 5 H 0.10 1.48 7.41 -51.93 -0.38 1.09 16 6 C -0.17 -2.67 9.31 37.16 0.35 -2.32 16 7 N -1.12 -17.67 5.46 -4.89 -0.03 -17.70 16 8 S 2.69 52.38 5.71 -107.50 -0.61 51.77 16 9 O -0.99 -21.33 17.26 -57.17 -0.99 -22.31 16 10 O -0.99 -20.86 16.59 -57.17 -0.95 -21.81 16 11 C -0.78 -17.01 5.08 -39.29 -0.20 -17.21 16 12 C -0.02 -0.36 8.57 -39.66 -0.34 -0.70 16 13 C -0.18 -4.43 8.70 -38.87 -0.34 -4.77 16 14 C 0.14 3.50 5.58 -106.82 -0.60 2.90 16 15 C -0.44 -10.60 9.05 -37.74 -0.34 -10.94 16 16 H 0.09 2.02 7.91 -52.48 -0.41 1.61 16 17 C 0.07 1.66 5.14 -17.34 -0.09 1.57 16 18 N -0.77 -17.79 10.95 55.55 0.61 -17.18 16 19 Si 0.92 16.89 29.59 -169.99 -5.03 11.86 16 20 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 21 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 22 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 23 C -0.24 -5.61 9.80 -38.87 -0.38 -5.99 16 24 C 0.00 0.09 9.49 -39.66 -0.38 -0.28 16 25 C -0.17 -1.85 6.89 -25.92 -0.18 -2.03 16 26 C -0.16 -1.46 7.30 -25.92 -0.19 -1.65 16 27 C -0.16 -1.64 6.16 -25.92 -0.16 -1.80 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.38 5.85 -51.93 -0.30 0.07 16 30 H 0.05 0.39 5.86 -51.93 -0.30 0.08 16 31 H 0.08 1.48 6.18 -51.93 -0.32 1.15 16 32 H 0.06 0.83 7.61 -51.93 -0.40 0.43 16 33 H 0.06 0.97 8.01 -51.93 -0.42 0.55 16 34 H 0.41 6.00 8.34 -34.47 -0.29 5.71 16 35 H 0.10 2.10 7.59 -52.48 -0.40 1.71 16 36 H 0.12 3.01 6.15 -52.49 -0.32 2.68 16 37 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 38 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 39 H 0.10 2.12 7.60 -52.48 -0.40 1.72 16 40 H 0.10 1.16 8.03 -51.93 -0.42 0.74 16 41 H 0.07 0.80 7.48 -51.93 -0.39 0.41 16 42 H 0.09 0.70 4.83 -51.93 -0.25 0.45 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.73 7.47 -51.93 -0.39 0.34 16 45 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -29.13 367.72 -10.21 -39.34 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -6.22 Total: 13.73 kcal Atomic # 6 Polarization: -36.34 SS G_CDS: -2.18 Total: -38.52 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.58 Total: -34.88 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -2.29 Total: -48.83 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Atomic # 16 Polarization: 52.38 SS G_CDS: -0.61 Total: 51.77 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.13 -10.21 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649836510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.024 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds