Wall clock time and date at job start Tue Mar 31 2020 23:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42905 * 113.99998 * 2 1 4 4 C 1.52994 * 112.84820 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47179 * 173.80173 * 4 3 2 6 6 C 1.52998 * 109.47361 * 293.80231 * 4 3 2 7 7 N 1.46501 * 109.47312 * 53.80481 * 4 3 2 8 8 S 1.65599 * 120.00133 * 145.00339 * 7 4 3 9 9 O 1.42095 * 106.40526 * 178.53801 * 8 7 4 10 10 O 1.42110 * 106.39958 * 311.45341 * 8 7 4 11 11 C 1.76201 * 107.22298 * 64.99307 * 8 7 4 12 12 C 1.38624 * 119.75027 * 269.73268 * 11 8 7 13 13 C 1.37621 * 120.24978 * 179.71888 * 12 11 8 14 14 C 1.40721 * 119.74008 * 0.57176 * 13 12 11 15 15 C 1.41394 * 120.24249 * 179.68492 * 14 13 12 16 16 H 1.08008 * 119.99703 * 204.39641 * 15 14 13 17 17 C 1.39942 * 120.00311 * 24.39744 * 15 14 13 18 18 N 1.30821 * 120.00237 * 17.85827 * 17 15 14 19 19 Si 1.86800 * 119.99946 * 197.86151 * 17 15 14 20 20 H 1.48501 * 109.47194 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47500 * 120.00027 * 19 17 15 22 22 H 1.48503 * 109.46945 * 239.99664 * 19 17 15 23 23 C 1.40712 * 119.51342 * 359.69833 * 14 13 12 24 24 C 1.37619 * 119.74356 * 0.02562 * 23 14 13 25 25 C 1.53779 * 113.68611 * 311.26889 * 3 2 1 26 26 C 1.53781 * 87.08227 * 89.12853 * 25 3 2 27 27 C 1.53779 * 113.61250 * 48.80428 * 3 2 1 28 28 H 1.08998 * 109.46589 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46695 * 300.00195 * 1 2 3 30 30 H 1.09001 * 109.46856 * 59.99752 * 1 2 3 31 31 H 1.09004 * 109.47576 * 180.02562 * 6 4 3 32 32 H 1.09005 * 109.46818 * 300.00363 * 6 4 3 33 33 H 1.09000 * 109.47022 * 59.99846 * 6 4 3 34 34 H 0.97003 * 119.99906 * 324.99533 * 7 4 3 35 35 H 1.08003 * 119.87964 * 359.97438 * 12 11 8 36 36 H 1.08000 * 120.13587 * 180.27960 * 13 12 11 37 37 H 0.96992 * 120.00351 * 179.97438 * 18 17 15 38 38 H 1.08004 * 120.13232 * 179.97438 * 23 14 13 39 39 H 1.08008 * 119.87945 * 179.97438 * 24 23 14 40 40 H 1.09005 * 113.61113 * 203.67407 * 25 3 2 41 41 H 1.08994 * 113.61910 * 334.57350 * 25 3 2 42 42 H 1.08999 * 113.61090 * 270.88024 * 26 25 3 43 43 H 1.08999 * 113.61311 * 139.97779 * 26 25 3 44 44 H 1.08990 * 113.61589 * 25.34588 * 27 3 2 45 45 H 1.08997 * 113.61007 * 156.25665 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5399 1.2748 -0.0006 5 1 3.9237 2.2889 -0.1116 6 6 4.0387 0.6822 1.3188 7 7 4.0114 0.4496 -1.1156 8 16 5.4031 0.8559 -1.9158 9 8 5.6039 -0.1443 -2.9049 10 8 5.3015 2.2404 -2.2199 11 6 6.7306 0.6947 -0.7684 12 6 7.1069 1.7816 0.0053 13 6 8.1385 1.6655 0.9088 14 6 8.8199 0.4409 1.0368 15 6 9.8856 0.3118 1.9570 16 1 10.6453 -0.4400 1.8013 17 6 9.9562 1.1580 3.0693 18 7 8.8950 1.8165 3.4586 19 14 11.5658 1.3472 3.9983 20 1 12.6071 0.5012 3.3618 21 1 11.9932 2.7690 3.9638 22 1 11.3765 0.9214 5.4083 23 6 8.4329 -0.6540 0.2422 24 6 7.3947 -0.5165 -0.6506 25 6 1.4130 2.2477 -1.0585 26 6 0.3746 2.6522 0.0013 27 6 1.4130 2.2457 1.0603 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 5.1285 0.6607 1.3186 32 1 3.6879 1.2962 2.1484 33 1 3.6550 -0.3319 1.4298 34 1 3.5083 -0.3347 -1.3851 35 1 6.5859 2.7220 -0.0983 36 1 8.4272 2.5122 1.5139 37 1 8.9438 2.4027 4.2298 38 1 8.9492 -1.5983 0.3319 39 1 7.0962 -1.3554 -1.2620 40 1 2.0810 3.0592 -1.3473 41 1 0.9835 1.7268 -1.9142 42 1 -0.5169 2.0250 0.0006 43 1 0.1440 3.7175 0.0022 44 1 0.9835 1.7232 1.9149 45 1 2.0809 3.0566 1.3506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649836510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:41 Heat of formation + Delta-G solvation = -99.030203 kcal Electronic energy + Delta-G solvation = -28433.684815 eV Core-core repulsion = 24542.940878 eV Total energy + Delta-G solvation = -3890.743938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.58256 -39.37692 -38.15238 -36.78415 -36.68567 -35.79063 -35.68038 -32.06247 -31.27299 -30.91386 -28.39628 -27.58231 -26.64627 -25.31847 -23.27987 -22.94753 -22.47980 -21.03411 -20.22199 -19.40107 -18.66702 -18.39100 -17.57007 -17.18665 -17.00541 -16.39020 -16.01062 -15.84871 -15.70254 -15.18676 -14.94217 -14.58440 -14.55835 -14.37361 -14.09208 -13.94458 -13.83582 -13.51167 -13.14379 -13.08423 -13.06526 -13.02424 -12.98907 -12.87477 -12.74814 -12.68588 -12.56667 -12.35113 -11.97076 -11.67304 -11.53168 -11.44238 -11.31352 -11.20563 -11.04985 -10.34736 -10.22105 -9.73547 -9.51423 -8.85291 -6.62283 -0.28303 0.50980 1.08946 1.36943 1.42587 1.53106 2.12848 2.22742 2.53034 2.75549 2.95447 3.47763 3.52571 3.58199 3.59836 3.74647 3.91075 4.16266 4.32925 4.34369 4.41230 4.45747 4.54599 4.56256 4.63137 4.81241 4.82572 4.85504 4.88930 4.95974 4.98152 5.02459 5.06918 5.11311 5.12656 5.24430 5.27116 5.37322 5.47476 5.54846 5.62231 5.79252 5.95578 6.17404 6.20588 6.36454 6.51530 6.71084 6.83527 8.09756 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.003495 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.871653 B = 8010.595375 C = 8982.039966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.373 6.373 3 C 0.092 3.908 4 C 0.176 3.824 5 H 0.096 0.904 6 C -0.168 4.168 7 N -1.101 6.101 8 S 2.720 3.280 9 O -1.005 7.005 10 O -1.000 7.000 11 C -0.791 4.791 12 C -0.014 4.014 13 C -0.203 4.203 14 C 0.114 3.886 15 C -0.467 4.467 16 H 0.088 0.912 17 C 0.038 3.962 18 N -0.792 5.792 19 Si 0.988 3.012 20 H -0.257 1.257 21 H -0.262 1.262 22 H -0.261 1.261 23 C -0.257 4.257 24 C -0.001 4.001 25 C -0.172 4.172 26 C -0.148 4.148 27 C -0.160 4.160 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.423 0.577 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.298 0.702 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.188 1.361 0.315 15.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.291 6.291 3 C 0.050 3.950 4 C 0.069 3.931 5 H 0.114 0.886 6 C -0.227 4.227 7 N -0.860 5.860 8 S 2.816 3.184 9 O -0.996 6.996 10 O -0.991 6.991 11 C -0.884 4.884 12 C -0.034 4.034 13 C -0.223 4.223 14 C 0.110 3.890 15 C -0.494 4.494 16 H 0.106 0.894 17 C -0.182 4.182 18 N -0.415 5.415 19 Si 0.808 3.192 20 H -0.180 1.180 21 H -0.186 1.186 22 H -0.186 1.186 23 C -0.277 4.277 24 C -0.021 4.021 25 C -0.209 4.209 26 C -0.185 4.185 27 C -0.198 4.198 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.259 0.741 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.139 0.861 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.064 1.771 -0.356 15.172 hybrid contribution 0.806 -0.303 0.971 1.298 sum -14.258 1.467 0.615 14.346 Atomic orbital electron populations 1.23270 0.80026 1.03561 1.01270 1.87870 1.21193 1.25501 1.94575 1.22772 0.90970 0.83785 0.97493 1.20785 0.92083 0.94288 0.85938 0.88598 1.22254 1.01468 1.02188 0.96795 1.55286 1.41755 1.40872 1.48127 1.00401 0.72808 0.72172 0.73004 1.93455 1.86391 1.61197 1.58563 1.93455 1.87063 1.34708 1.83828 1.29547 1.27178 1.02596 1.29070 1.20378 0.95259 0.95553 0.92241 1.21316 1.01012 0.98022 1.01963 1.18168 0.90152 0.91076 0.89577 1.20227 1.07856 1.15632 1.05715 0.89380 1.26924 1.01254 0.92381 0.97667 1.69834 1.30670 1.19369 1.21622 0.85056 0.76782 0.79551 0.77851 1.18010 1.18603 1.18563 1.21240 1.03186 0.98423 1.04873 1.20405 0.93291 0.94647 0.93748 1.23641 0.99511 0.99714 0.98060 1.23303 0.97402 1.03149 0.94606 1.23576 0.99095 0.99438 0.97707 0.88809 0.92159 0.92518 0.93231 0.90498 0.91747 0.74081 0.86735 0.87058 0.89058 0.87411 0.86145 0.89362 0.90649 0.87516 0.89935 0.89789 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.17 113.37 1.04 1.25 16 2 O -0.37 -8.44 9.97 -148.98 -1.49 -9.92 16 3 C 0.09 2.07 1.06 -10.27 -0.01 2.06 16 4 C 0.18 5.00 2.50 44.99 0.11 5.11 16 5 H 0.10 2.79 7.41 -2.39 -0.02 2.78 16 6 C -0.17 -5.09 9.31 71.98 0.67 -4.42 16 7 N -1.10 -34.02 5.46 -169.40 -0.93 -34.95 16 8 S 2.72 104.61 5.71 -56.49 -0.32 104.29 16 9 O -1.01 -42.66 17.26 -128.00 -2.21 -44.87 16 10 O -1.00 -41.71 16.59 -128.00 -2.12 -43.84 16 11 C -0.79 -34.60 5.08 22.46 0.11 -34.48 16 12 C -0.01 -0.66 8.57 22.22 0.19 -0.47 16 13 C -0.20 -10.23 8.70 22.73 0.20 -10.03 16 14 C 0.11 5.87 5.58 -21.29 -0.12 5.75 16 15 C -0.47 -23.36 9.05 23.46 0.21 -23.14 16 16 H 0.09 4.21 7.91 -2.91 -0.02 4.19 16 17 C 0.04 1.72 5.14 85.26 0.44 2.15 16 18 N -0.79 -37.38 10.95 21.83 0.24 -37.14 16 19 Si 0.99 34.44 29.59 68.60 2.03 36.47 16 20 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 21 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 22 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 23 C -0.26 -12.39 9.80 22.73 0.22 -12.17 16 24 C 0.00 -0.05 9.49 22.22 0.21 0.16 16 25 C -0.17 -3.50 6.89 31.12 0.21 -3.28 16 26 C -0.15 -2.23 7.30 31.12 0.23 -2.00 16 27 C -0.16 -2.88 6.16 31.12 0.19 -2.69 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 0.76 5.85 -2.39 -0.01 0.74 16 30 H 0.06 0.75 5.86 -2.39 -0.01 0.74 16 31 H 0.05 1.82 6.18 -2.39 -0.01 1.81 16 32 H 0.08 2.03 7.61 -2.38 -0.02 2.02 16 33 H 0.06 1.91 8.01 -2.39 -0.02 1.89 16 34 H 0.42 11.78 8.34 -96.74 -0.81 10.97 16 35 H 0.11 4.82 7.59 -2.91 -0.02 4.80 16 36 H 0.11 5.73 6.15 -2.91 -0.02 5.72 16 37 H 0.30 12.44 8.30 -92.71 -0.77 11.67 16 38 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 39 H 0.12 4.91 7.60 -2.91 -0.02 4.89 16 40 H 0.09 1.97 8.03 -2.38 -0.02 1.95 16 41 H 0.07 1.49 7.48 -2.39 -0.02 1.47 16 42 H 0.11 1.27 4.83 -2.39 -0.01 1.25 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.39 7.47 -2.39 -0.02 1.37 16 45 H 0.10 1.73 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -62.65 367.72 -0.67 -63.32 By element: Atomic # 1 Polarization: 42.61 SS G_CDS: 0.21 Total: 42.82 kcal Atomic # 6 Polarization: -80.11 SS G_CDS: 3.91 Total: -76.20 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -0.69 Total: -72.09 kcal Atomic # 8 Polarization: -92.81 SS G_CDS: -5.82 Total: -98.62 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Atomic # 16 Polarization: 104.61 SS G_CDS: -0.32 Total: 104.29 kcal Total: -62.65 -0.67 -63.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649836510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.710 kcal (2) G-P(sol) polarization free energy of solvation -62.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds