Wall clock time and date at job start Tue Mar 31 2020 23:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 114.00073 * 2 1 4 4 C 1.53000 * 112.84639 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46772 * 170.33381 * 4 3 2 6 6 C 1.52995 * 109.47196 * 50.33606 * 4 3 2 7 7 N 1.46502 * 109.47482 * 290.33404 * 4 3 2 8 8 S 1.65600 * 119.99999 * 215.00824 * 7 4 3 9 9 O 1.42105 * 106.40154 * 178.53984 * 8 7 4 10 10 O 1.42101 * 106.40024 * 311.45344 * 8 7 4 11 11 C 1.76200 * 107.22262 * 64.99784 * 8 7 4 12 12 C 1.38636 * 119.74726 * 269.72942 * 11 8 7 13 13 C 1.37612 * 120.24715 * 179.72209 * 12 11 8 14 14 C 1.40718 * 119.74516 * 0.56683 * 13 12 11 15 15 C 1.41393 * 120.24465 * 179.68311 * 14 13 12 16 16 H 1.07999 * 120.00067 * 204.40610 * 15 14 13 17 17 C 1.39942 * 120.00126 * 24.40210 * 15 14 13 18 18 N 1.30826 * 119.99985 * 17.85557 * 17 15 14 19 19 Si 1.86800 * 120.00135 * 197.85860 * 17 15 14 20 20 H 1.48497 * 109.47217 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47409 * 120.00100 * 19 17 15 22 22 H 1.48507 * 109.46988 * 240.00133 * 19 17 15 23 23 C 1.40712 * 119.50817 * 359.70857 * 14 13 12 24 24 C 1.37611 * 119.74992 * 359.97438 * 23 14 13 25 25 C 1.53770 * 113.61525 * 311.19847 * 3 2 1 26 26 C 1.53954 * 87.01971 * 89.22681 * 25 3 2 27 27 C 1.53779 * 113.61238 * 48.80917 * 3 2 1 28 28 H 1.08995 * 109.47336 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46886 * 299.99651 * 1 2 3 30 30 H 1.09001 * 109.47404 * 59.99312 * 1 2 3 31 31 H 1.09005 * 109.47202 * 59.99968 * 6 4 3 32 32 H 1.09004 * 109.47112 * 179.97438 * 6 4 3 33 33 H 1.08992 * 109.47297 * 299.99217 * 6 4 3 34 34 H 0.97000 * 119.99799 * 34.99735 * 7 4 3 35 35 H 1.08002 * 119.87633 * 359.97271 * 12 11 8 36 36 H 1.08004 * 120.12645 * 180.27574 * 13 12 11 37 37 H 0.96998 * 120.00109 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.12732 * 179.97438 * 23 14 13 39 39 H 1.08001 * 119.88093 * 180.02562 * 24 23 14 40 40 H 1.08999 * 113.61863 * 203.74473 * 25 3 2 41 41 H 1.09005 * 113.61767 * 334.64894 * 25 3 2 42 42 H 1.09001 * 113.54109 * 270.81340 * 26 25 3 43 43 H 1.09004 * 113.74457 * 139.94292 * 26 25 3 44 44 H 1.09003 * 113.61903 * 25.34296 * 27 3 2 45 45 H 1.08994 * 113.61354 * 156.16681 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5399 1.2747 -0.0006 5 1 3.9235 2.2803 -0.1732 6 6 4.0308 0.3441 -1.1114 7 7 4.0191 0.7848 1.2942 8 16 5.4154 1.3930 1.9444 9 8 5.5867 0.7498 3.2000 10 8 6.3900 1.3525 0.9111 11 6 5.1299 3.0964 2.2928 12 6 5.4107 4.0522 1.3285 13 6 5.1863 5.3849 1.5875 14 6 4.6811 5.7771 2.8410 15 6 4.4529 7.1442 3.1208 16 1 4.4526 7.4935 4.1427 17 6 4.2276 8.0447 2.0735 18 7 3.8816 7.6010 0.8924 19 14 4.4208 9.8801 2.3620 20 1 4.8154 10.1206 3.7732 21 1 5.4687 10.4160 1.4563 22 1 3.1313 10.5630 2.0858 23 6 4.4053 4.7988 3.8140 24 6 4.6312 3.4713 3.5308 25 6 1.4130 2.2457 -1.0601 26 6 0.3746 2.6521 0.0014 27 6 1.4130 2.2457 1.0603 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.6743 0.7087 -2.0748 32 1 5.1206 0.3225 -1.1121 33 1 3.6474 -0.6614 -0.9389 34 1 3.5184 0.1042 1.7707 35 1 5.8031 3.7492 0.3690 36 1 5.4015 6.1274 0.8333 37 1 3.7250 8.2251 0.1666 38 1 4.0178 5.0887 4.7796 39 1 4.4199 2.7186 4.2759 40 1 2.0808 3.0567 -1.3505 41 1 0.9834 1.7233 -1.9149 42 1 -0.5169 2.0250 0.0008 43 1 0.1429 3.7173 0.0035 44 1 0.9834 1.7231 1.9151 45 1 2.0815 3.0557 1.3518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649836511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:46 Heat of formation + Delta-G solvation = -81.246410 kcal Electronic energy + Delta-G solvation = -28835.305073 eV Core-core repulsion = 24945.332299 eV Total energy + Delta-G solvation = -3889.972774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.57681 -37.60447 -36.49988 -35.52332 -35.07585 -34.62403 -34.06463 -30.28474 -29.77997 -29.48432 -27.46957 -25.84472 -25.60911 -24.42689 -21.59524 -21.36718 -21.09432 -19.96689 -18.77716 -17.64621 -17.19287 -16.73947 -16.34066 -16.00955 -15.52632 -15.15842 -15.04925 -14.37842 -14.16574 -13.57952 -13.48673 -13.42750 -13.32359 -13.14976 -12.57210 -12.39333 -12.26626 -12.21416 -12.08848 -11.91352 -11.80104 -11.46183 -11.37794 -11.30363 -11.26734 -11.21854 -11.18558 -10.92043 -10.71964 -10.44738 -10.38637 -10.11577 -9.76399 -9.57514 -9.53005 -9.38505 -8.95560 -7.98325 -7.72823 -7.17909 -4.82752 1.30071 2.22686 2.85365 2.87955 2.90173 2.93195 3.63301 3.64138 3.74105 4.20734 4.51760 4.57034 4.61871 4.75139 4.91068 5.17457 5.20906 5.27455 5.31328 5.36237 5.53089 5.54283 5.58421 5.70467 5.81837 5.86698 5.96584 6.02822 6.05719 6.09082 6.09987 6.12834 6.35529 6.46705 6.52922 6.65440 6.69024 6.89732 7.02531 7.25434 7.31168 7.39459 7.43589 7.61493 7.74840 7.94542 8.29330 8.49001 8.62346 9.73414 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.004360 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.809699 B = 6420.747791 C = 7784.975272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.356 6.356 3 C 0.092 3.908 4 C 0.184 3.816 5 H 0.099 0.901 6 C -0.167 4.167 7 N -1.116 6.116 8 S 2.690 3.310 9 O -0.988 6.988 10 O -0.983 6.983 11 C -0.786 4.786 12 C -0.019 4.019 13 C -0.181 4.181 14 C 0.140 3.860 15 C -0.435 4.435 16 H 0.087 0.913 17 C 0.074 3.926 18 N -0.766 5.766 19 Si 0.915 3.085 20 H -0.256 1.256 21 H -0.267 1.267 22 H -0.270 1.270 23 C -0.239 4.239 24 C 0.004 3.996 25 C -0.160 4.160 26 C -0.161 4.161 27 C -0.159 4.159 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.413 0.587 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.288 0.712 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.707 -6.779 -4.867 11.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.274 6.274 3 C 0.051 3.949 4 C 0.077 3.923 5 H 0.117 0.883 6 C -0.226 4.226 7 N -0.872 5.872 8 S 2.789 3.211 9 O -0.978 6.978 10 O -0.973 6.973 11 C -0.882 4.882 12 C -0.039 4.039 13 C -0.202 4.202 14 C 0.137 3.863 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.149 4.149 18 N -0.388 5.388 19 Si 0.738 3.262 20 H -0.180 1.180 21 H -0.192 1.192 22 H -0.195 1.195 23 C -0.259 4.259 24 C -0.016 4.016 25 C -0.198 4.198 26 C -0.199 4.199 27 C -0.197 4.197 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.246 0.754 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.782 -7.274 -5.084 11.169 hybrid contribution -0.974 1.499 0.279 1.809 sum -7.757 -5.775 -4.805 10.798 Atomic orbital electron populations 1.23035 0.81856 1.02070 1.00444 1.87885 1.19217 1.25856 1.94445 1.22841 0.92695 0.82955 0.96442 1.20543 0.90086 0.98453 0.83246 0.88303 1.22230 1.02324 1.00499 0.97550 1.55732 1.46361 1.54881 1.30186 1.01330 0.72602 0.74690 0.72484 1.93488 1.85143 1.76197 1.42994 1.93486 1.57503 1.87810 1.58521 1.29186 1.33947 1.20292 1.04810 1.20267 0.94567 0.93502 0.95596 1.21328 1.05267 0.94428 0.99142 1.17840 0.84737 0.92615 0.91156 1.19973 1.39172 0.92323 0.94785 0.89459 1.26111 0.91794 1.02652 0.94295 1.69813 1.28209 1.38326 1.02481 0.86134 0.79116 0.80523 0.80429 1.17980 1.19207 1.19550 1.21042 1.11786 0.92520 1.00591 1.20151 0.92258 0.96124 0.93069 1.23570 0.99190 0.99819 0.97270 1.23326 0.97468 1.02391 0.96671 1.23537 0.98827 1.00183 0.97104 0.90177 0.93302 0.93451 0.92025 0.91167 0.91594 0.75421 0.87936 0.86014 0.90084 0.88290 0.87858 0.88457 0.90929 0.89465 0.90825 0.91047 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.17 101.05 0.93 1.14 16 2 O -0.36 -4.47 9.94 -35.23 -0.35 -4.82 16 3 C 0.09 1.20 1.04 -89.81 -0.09 1.11 16 4 C 0.18 2.70 2.40 -67.93 -0.16 2.53 16 5 H 0.10 1.53 7.07 -51.93 -0.37 1.16 16 6 C -0.17 -2.26 9.28 37.15 0.34 -1.92 16 7 N -1.12 -17.42 5.26 -4.89 -0.03 -17.45 16 8 S 2.69 51.87 5.65 -107.50 -0.61 51.26 16 9 O -0.99 -21.14 17.26 -57.17 -0.99 -22.13 16 10 O -0.98 -20.80 16.51 -57.17 -0.94 -21.75 16 11 C -0.79 -16.77 5.84 -39.29 -0.23 -17.00 16 12 C -0.02 -0.42 8.88 -39.66 -0.35 -0.77 16 13 C -0.18 -4.36 8.70 -38.87 -0.34 -4.70 16 14 C 0.14 3.44 5.57 -106.83 -0.60 2.84 16 15 C -0.44 -10.41 9.05 -37.74 -0.34 -10.75 16 16 H 0.09 2.00 7.91 -52.49 -0.41 1.58 16 17 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 18 N -0.77 -17.48 10.95 55.55 0.61 -16.87 16 19 Si 0.91 16.66 29.59 -169.99 -5.03 11.63 16 20 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 21 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 22 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 23 C -0.24 -5.49 9.80 -38.88 -0.38 -5.87 16 24 C 0.00 0.09 9.49 -39.66 -0.38 -0.29 16 25 C -0.16 -1.90 6.87 -25.83 -0.18 -2.08 16 26 C -0.16 -1.90 7.30 -25.83 -0.19 -2.09 16 27 C -0.16 -2.18 6.69 -25.92 -0.17 -2.36 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.46 5.86 -51.92 -0.30 0.16 16 30 H 0.05 0.42 5.86 -51.93 -0.30 0.11 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.03 7.64 -51.93 -0.40 0.63 16 33 H 0.06 0.86 7.64 -51.93 -0.40 0.47 16 34 H 0.41 5.80 8.84 -34.47 -0.30 5.49 16 35 H 0.10 2.11 7.59 -52.49 -0.40 1.71 16 36 H 0.12 2.97 6.16 -52.48 -0.32 2.65 16 37 H 0.29 5.88 8.30 -40.82 -0.34 5.55 16 38 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 39 H 0.10 2.06 7.60 -52.49 -0.40 1.67 16 40 H 0.10 1.20 7.99 -51.93 -0.41 0.78 16 41 H 0.07 0.77 7.48 -51.93 -0.39 0.38 16 42 H 0.09 0.86 4.83 -51.93 -0.25 0.61 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.07 0.94 7.48 -51.93 -0.39 0.55 16 45 H 0.10 1.72 8.10 -51.93 -0.42 1.30 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -28.54 370.50 -10.28 -38.82 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -6.30 Total: 14.38 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: -2.23 Total: -38.65 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.58 Total: -34.32 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -2.28 Total: -48.70 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.03 Total: 11.63 kcal Atomic # 16 Polarization: 51.87 SS G_CDS: -0.61 Total: 51.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.54 -10.28 -38.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649836511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.430 kcal (2) G-P(sol) polarization free energy of solvation -28.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds