Wall clock time and date at job start Tue Mar 31 2020 23:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 114.00073 * 2 1 4 4 C 1.53000 * 112.84639 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46772 * 170.33381 * 4 3 2 6 6 C 1.52995 * 109.47196 * 50.33606 * 4 3 2 7 7 N 1.46502 * 109.47482 * 290.33404 * 4 3 2 8 8 S 1.65600 * 119.99999 * 215.00824 * 7 4 3 9 9 O 1.42105 * 106.40154 * 178.53984 * 8 7 4 10 10 O 1.42101 * 106.40024 * 311.45344 * 8 7 4 11 11 C 1.76200 * 107.22262 * 64.99784 * 8 7 4 12 12 C 1.38636 * 119.74726 * 269.72942 * 11 8 7 13 13 C 1.37612 * 120.24715 * 179.72209 * 12 11 8 14 14 C 1.40718 * 119.74516 * 0.56683 * 13 12 11 15 15 C 1.41393 * 120.24465 * 179.68311 * 14 13 12 16 16 H 1.07999 * 120.00067 * 204.40610 * 15 14 13 17 17 C 1.39942 * 120.00126 * 24.40210 * 15 14 13 18 18 N 1.30826 * 119.99985 * 17.85557 * 17 15 14 19 19 Si 1.86800 * 120.00135 * 197.85860 * 17 15 14 20 20 H 1.48497 * 109.47217 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47409 * 120.00100 * 19 17 15 22 22 H 1.48507 * 109.46988 * 240.00133 * 19 17 15 23 23 C 1.40712 * 119.50817 * 359.70857 * 14 13 12 24 24 C 1.37611 * 119.74992 * 359.97438 * 23 14 13 25 25 C 1.53770 * 113.61525 * 311.19847 * 3 2 1 26 26 C 1.53954 * 87.01971 * 89.22681 * 25 3 2 27 27 C 1.53779 * 113.61238 * 48.80917 * 3 2 1 28 28 H 1.08995 * 109.47336 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46886 * 299.99651 * 1 2 3 30 30 H 1.09001 * 109.47404 * 59.99312 * 1 2 3 31 31 H 1.09005 * 109.47202 * 59.99968 * 6 4 3 32 32 H 1.09004 * 109.47112 * 179.97438 * 6 4 3 33 33 H 1.08992 * 109.47297 * 299.99217 * 6 4 3 34 34 H 0.97000 * 119.99799 * 34.99735 * 7 4 3 35 35 H 1.08002 * 119.87633 * 359.97271 * 12 11 8 36 36 H 1.08004 * 120.12645 * 180.27574 * 13 12 11 37 37 H 0.96998 * 120.00109 * 179.97438 * 18 17 15 38 38 H 1.08005 * 120.12732 * 179.97438 * 23 14 13 39 39 H 1.08001 * 119.88093 * 180.02562 * 24 23 14 40 40 H 1.08999 * 113.61863 * 203.74473 * 25 3 2 41 41 H 1.09005 * 113.61767 * 334.64894 * 25 3 2 42 42 H 1.09001 * 113.54109 * 270.81340 * 26 25 3 43 43 H 1.09004 * 113.74457 * 139.94292 * 26 25 3 44 44 H 1.09003 * 113.61903 * 25.34296 * 27 3 2 45 45 H 1.08994 * 113.61354 * 156.16681 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5399 1.2747 -0.0006 5 1 3.9235 2.2803 -0.1732 6 6 4.0308 0.3441 -1.1114 7 7 4.0191 0.7848 1.2942 8 16 5.4154 1.3930 1.9444 9 8 5.5867 0.7498 3.2000 10 8 6.3900 1.3525 0.9111 11 6 5.1299 3.0964 2.2928 12 6 5.4107 4.0522 1.3285 13 6 5.1863 5.3849 1.5875 14 6 4.6811 5.7771 2.8410 15 6 4.4529 7.1442 3.1208 16 1 4.4526 7.4935 4.1427 17 6 4.2276 8.0447 2.0735 18 7 3.8816 7.6010 0.8924 19 14 4.4208 9.8801 2.3620 20 1 4.8154 10.1206 3.7732 21 1 5.4687 10.4160 1.4563 22 1 3.1313 10.5630 2.0858 23 6 4.4053 4.7988 3.8140 24 6 4.6312 3.4713 3.5308 25 6 1.4130 2.2457 -1.0601 26 6 0.3746 2.6521 0.0014 27 6 1.4130 2.2457 1.0603 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.6743 0.7087 -2.0748 32 1 5.1206 0.3225 -1.1121 33 1 3.6474 -0.6614 -0.9389 34 1 3.5184 0.1042 1.7707 35 1 5.8031 3.7492 0.3690 36 1 5.4015 6.1274 0.8333 37 1 3.7250 8.2251 0.1666 38 1 4.0178 5.0887 4.7796 39 1 4.4199 2.7186 4.2759 40 1 2.0808 3.0567 -1.3505 41 1 0.9834 1.7233 -1.9149 42 1 -0.5169 2.0250 0.0008 43 1 0.1429 3.7173 0.0035 44 1 0.9834 1.7231 1.9151 45 1 2.0815 3.0557 1.3518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649836511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:45 Heat of formation + Delta-G solvation = -99.193611 kcal Electronic energy + Delta-G solvation = -28836.083322 eV Core-core repulsion = 24945.332299 eV Total energy + Delta-G solvation = -3890.751023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58151 -39.37781 -38.15245 -36.79148 -36.66514 -35.79355 -35.64896 -32.06053 -31.28730 -30.97645 -28.33992 -27.61226 -26.64039 -25.40646 -23.31365 -22.96779 -22.44116 -21.02015 -20.26470 -19.41610 -18.67064 -18.25001 -17.69843 -17.18683 -17.06932 -16.37686 -16.00904 -15.84790 -15.73906 -15.15117 -14.98335 -14.62753 -14.49566 -14.35085 -14.08675 -13.96502 -13.74422 -13.54378 -13.21267 -13.13357 -13.07310 -13.01608 -12.90056 -12.86519 -12.84692 -12.62979 -12.60870 -12.31729 -11.98665 -11.68180 -11.58415 -11.51087 -11.29160 -11.22331 -11.01069 -10.33503 -10.26401 -9.77449 -9.53591 -8.86936 -6.63760 -0.28798 0.49185 1.07109 1.36145 1.41712 1.52178 2.11701 2.23196 2.52723 2.69304 2.98004 3.49622 3.52538 3.57860 3.60728 3.69280 3.90020 4.12828 4.31393 4.32282 4.40528 4.47165 4.54757 4.57195 4.61738 4.80417 4.81883 4.85114 4.87648 4.95100 4.99429 5.03371 5.04140 5.09921 5.11308 5.24584 5.25999 5.36024 5.45232 5.53314 5.60607 5.77717 5.94155 6.16063 6.20438 6.32700 6.50041 6.69599 6.81914 8.07960 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.004360 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.809699 B = 6420.747791 C = 7784.975272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.365 6.365 3 C 0.100 3.900 4 C 0.175 3.825 5 H 0.086 0.914 6 C -0.163 4.163 7 N -1.102 6.102 8 S 2.719 3.281 9 O -1.005 7.005 10 O -0.999 6.999 11 C -0.792 4.792 12 C -0.019 4.019 13 C -0.203 4.203 14 C 0.115 3.885 15 C -0.466 4.466 16 H 0.088 0.912 17 C 0.038 3.962 18 N -0.791 5.791 19 Si 0.986 3.014 20 H -0.256 1.256 21 H -0.262 1.262 22 H -0.261 1.261 23 C -0.256 4.256 24 C 0.001 3.999 25 C -0.157 4.157 26 C -0.153 4.153 27 C -0.167 4.167 28 H 0.099 0.901 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.423 0.577 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.298 0.702 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 -7.351 -5.682 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.284 6.284 3 C 0.058 3.942 4 C 0.068 3.932 5 H 0.104 0.896 6 C -0.222 4.222 7 N -0.861 5.861 8 S 2.815 3.185 9 O -0.996 6.996 10 O -0.989 6.989 11 C -0.886 4.886 12 C -0.039 4.039 13 C -0.223 4.223 14 C 0.111 3.889 15 C -0.493 4.493 16 H 0.107 0.893 17 C -0.182 4.182 18 N -0.414 5.414 19 Si 0.806 3.194 20 H -0.180 1.180 21 H -0.186 1.186 22 H -0.185 1.185 23 C -0.276 4.276 24 C -0.019 4.019 25 C -0.195 4.195 26 C -0.190 4.190 27 C -0.205 4.205 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.258 0.742 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.139 0.861 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.108 -7.841 -5.889 12.724 hybrid contribution -0.621 1.539 0.500 1.733 sum -8.729 -6.303 -5.389 12.040 Atomic orbital electron populations 1.23262 0.80191 1.03655 1.01120 1.87868 1.21001 1.24997 1.94513 1.22646 0.91497 0.83490 0.96536 1.20728 0.91565 0.98149 0.82805 0.89581 1.22195 1.01413 1.00628 0.97946 1.55345 1.45552 1.54587 1.30609 1.00462 0.72799 0.73438 0.71768 1.93457 1.85818 1.76100 1.44222 1.93464 1.58827 1.87707 1.58906 1.29556 1.32780 1.21778 1.04449 1.20426 0.94016 0.93141 0.96314 1.21321 1.06747 0.95015 0.99201 1.18155 0.85432 0.93541 0.91752 1.20230 1.40661 0.92836 0.95553 0.89344 1.26911 0.90805 1.06780 0.93664 1.69833 1.28063 1.40210 1.03295 0.85076 0.79365 0.74782 0.80168 1.17984 1.18648 1.18526 1.21236 1.12443 0.92982 1.00949 1.20391 0.91744 0.96134 0.93644 1.23547 0.98907 0.99304 0.97737 1.23352 0.97880 1.02350 0.95438 1.23489 0.99304 0.99651 0.98088 0.88277 0.93122 0.92186 0.90106 0.92540 0.90864 0.74152 0.86741 0.87078 0.89056 0.87378 0.86118 0.89406 0.88860 0.86965 0.91727 0.90677 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.17 113.37 1.04 1.25 16 2 O -0.37 -8.22 9.94 -148.98 -1.48 -9.71 16 3 C 0.10 2.47 1.04 -10.27 -0.01 2.46 16 4 C 0.17 4.95 2.40 44.99 0.11 5.06 16 5 H 0.09 2.67 7.07 -2.38 -0.02 2.66 16 6 C -0.16 -4.15 9.28 71.98 0.67 -3.48 16 7 N -1.10 -33.48 5.26 -169.39 -0.89 -34.37 16 8 S 2.72 103.80 5.65 -56.49 -0.32 103.49 16 9 O -1.01 -42.27 17.26 -128.00 -2.21 -44.48 16 10 O -1.00 -41.86 16.51 -128.00 -2.11 -43.98 16 11 C -0.79 -34.19 5.84 22.46 0.13 -34.06 16 12 C -0.02 -0.86 8.88 22.22 0.20 -0.67 16 13 C -0.20 -10.10 8.70 22.73 0.20 -9.90 16 14 C 0.11 5.82 5.57 -21.29 -0.12 5.71 16 15 C -0.47 -22.92 9.05 23.46 0.21 -22.71 16 16 H 0.09 4.16 7.91 -2.91 -0.02 4.14 16 17 C 0.04 1.73 5.14 85.26 0.44 2.17 16 18 N -0.79 -36.76 10.95 21.83 0.24 -36.52 16 19 Si 0.99 33.96 29.59 68.60 2.03 35.99 16 20 H -0.26 -8.74 7.11 99.48 0.71 -8.04 16 21 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 22 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 23 C -0.26 -12.09 9.80 22.73 0.22 -11.87 16 24 C 0.00 0.03 9.49 22.22 0.21 0.24 16 25 C -0.16 -3.45 6.87 31.18 0.21 -3.24 16 26 C -0.15 -3.38 7.30 31.18 0.23 -3.15 16 27 C -0.17 -4.53 6.69 31.12 0.21 -4.32 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 0.81 5.86 -2.38 -0.01 0.79 16 30 H 0.06 0.83 5.86 -2.39 -0.01 0.81 16 31 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.06 1.59 7.64 -2.39 -0.02 1.57 16 33 H 0.07 1.75 7.64 -2.39 -0.02 1.74 16 34 H 0.42 11.31 8.84 -96.74 -0.85 10.45 16 35 H 0.11 4.81 7.59 -2.91 -0.02 4.79 16 36 H 0.11 5.67 6.16 -2.91 -0.02 5.65 16 37 H 0.30 12.26 8.30 -92.71 -0.77 11.49 16 38 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 39 H 0.12 4.80 7.60 -2.91 -0.02 4.78 16 40 H 0.09 2.11 7.99 -2.39 -0.02 2.09 16 41 H 0.09 1.68 7.48 -2.38 -0.02 1.66 16 42 H 0.11 1.91 4.83 -2.39 -0.01 1.90 16 43 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.07 1.92 7.48 -2.39 -0.02 1.90 16 45 H 0.07 2.44 8.10 -2.39 -0.02 2.42 16 Total: -1.00 -61.31 370.50 -0.63 -61.94 By element: Atomic # 1 Polarization: 43.98 SS G_CDS: 0.16 Total: 44.14 kcal Atomic # 6 Polarization: -80.45 SS G_CDS: 3.95 Total: -76.51 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -0.65 Total: -70.89 kcal Atomic # 8 Polarization: -92.36 SS G_CDS: -5.80 Total: -98.16 kcal Atomic # 14 Polarization: 33.96 SS G_CDS: 2.03 Total: 35.99 kcal Atomic # 16 Polarization: 103.80 SS G_CDS: -0.32 Total: 103.49 kcal Total: -61.31 -0.63 -61.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649836511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.251 kcal (2) G-P(sol) polarization free energy of solvation -61.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds