Wall clock time and date at job start Tue Mar 31 2020 23:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47666 * 2 1 4 4 C 1.53003 * 109.47401 * 120.00013 * 2 1 3 5 5 C 1.53005 * 109.47406 * 184.99955 * 4 2 1 6 6 H 1.08993 * 110.45317 * 52.39266 * 5 4 2 7 7 C 1.54505 * 110.51188 * 175.00157 * 5 4 2 8 8 C 1.54469 * 104.06503 * 118.64245 * 7 5 4 9 9 O 1.44428 * 104.80275 * 23.98098 * 8 7 5 10 10 C 1.44426 * 105.27156 * 319.48393 * 9 8 7 11 11 N 1.46498 * 109.47389 * 239.99954 * 2 1 3 12 12 S 1.65600 * 120.00007 * 94.72098 * 11 2 1 13 13 O 1.42101 * 106.40231 * 178.82111 * 12 11 2 14 14 O 1.42098 * 106.40326 * 311.74009 * 12 11 2 15 15 C 1.76195 * 107.21808 * 65.28195 * 12 11 2 16 16 C 1.38639 * 119.74729 * 269.72491 * 15 12 11 17 17 C 1.37618 * 120.24557 * 179.76311 * 16 15 12 18 18 C 1.40717 * 119.74604 * 0.48515 * 17 16 15 19 19 C 1.41401 * 120.24142 * 179.79059 * 18 17 16 20 20 H 1.07997 * 119.99700 * 150.21202 * 19 18 17 21 21 C 1.39942 * 120.00051 * 330.20645 * 19 18 17 22 22 N 1.30820 * 119.99929 * 161.73794 * 21 19 18 23 23 Si 1.86800 * 120.00285 * 341.73736 * 21 19 18 24 24 H 1.48504 * 109.46987 * 95.40938 * 23 21 19 25 25 H 1.48493 * 109.47292 * 215.41104 * 23 21 19 26 26 H 1.48498 * 109.46947 * 335.41145 * 23 21 19 27 27 C 1.40708 * 119.51046 * 359.76923 * 18 17 16 28 28 C 1.37615 * 119.75019 * 0.02562 * 27 18 17 29 29 H 1.08995 * 109.46909 * 299.99906 * 1 2 3 30 30 H 1.08999 * 109.47111 * 60.00082 * 1 2 3 31 31 H 1.09005 * 109.46765 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46772 * 304.99857 * 4 2 1 33 33 H 1.09004 * 109.47152 * 64.99831 * 4 2 1 34 34 H 1.09002 * 110.51059 * 237.28886 * 7 5 4 35 35 H 1.09004 * 110.51277 * 359.97438 * 7 5 4 36 36 H 1.09005 * 110.37146 * 142.80845 * 8 7 5 37 37 H 1.08997 * 110.37654 * 265.03334 * 8 7 5 38 38 H 1.08997 * 110.37261 * 281.68193 * 10 9 8 39 39 H 1.09000 * 110.36931 * 159.34596 * 10 9 8 40 40 H 0.97000 * 120.00142 * 275.00271 * 11 2 1 41 41 H 1.07999 * 119.87592 * 0.02562 * 16 15 12 42 42 H 1.08005 * 120.12712 * 180.23387 * 17 16 15 43 43 H 0.97006 * 120.00530 * 180.02562 * 22 21 19 44 44 H 1.08009 * 120.12687 * 179.97438 * 27 18 17 45 45 H 1.07998 * 119.87955 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3137 6 1 3.8773 0.4269 1.2226 7 6 4.0958 -1.2249 2.6294 8 6 5.0045 -2.3844 2.1646 9 8 5.4014 -2.0270 0.8227 10 6 4.2157 -1.4756 0.2095 11 7 2.0184 -0.6906 -1.1961 12 16 2.4057 0.1765 -2.5527 13 8 2.8665 -0.7646 -3.5125 14 8 1.3170 1.0585 -2.7896 15 6 3.7882 1.1905 -2.1466 16 6 3.5818 2.4664 -1.6452 17 6 4.6542 3.2653 -1.3200 18 6 5.9639 2.7863 -1.5077 19 6 7.0734 3.5999 -1.1813 20 1 7.9993 3.1466 -0.8595 21 6 6.9717 4.9925 -1.2752 22 7 7.8340 5.7547 -0.6534 23 14 5.6045 5.7629 -2.2885 24 1 4.4627 6.1029 -1.4020 25 1 6.1083 6.9973 -2.9422 26 1 5.1557 4.8008 -3.3269 27 6 6.1614 1.4916 -2.0223 28 6 5.0742 0.7086 -2.3366 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2617 2.1369 33 1 1.7517 -1.7716 1.2056 34 1 4.6728 -0.4877 3.1878 35 1 3.2720 -1.6038 3.2343 36 1 5.8791 -2.4634 2.8105 37 1 4.4503 -3.3229 2.1611 38 1 3.5399 -2.2745 -0.0958 39 1 4.4841 -0.8566 -0.6466 40 1 2.1110 -1.6562 -1.1949 41 1 2.5757 2.8333 -1.5054 42 1 4.4912 4.2576 -0.9260 43 1 7.7633 6.7200 -0.7181 44 1 7.1624 1.1141 -2.1707 45 1 5.2233 -0.2856 -2.7313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771621625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:30 Heat of formation + Delta-G solvation = -118.796413 kcal Electronic energy + Delta-G solvation = -29031.358003 eV Core-core repulsion = 25139.756938 eV Total energy + Delta-G solvation = -3891.601065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.60361 -37.88292 -37.00426 -36.45616 -35.25433 -34.02104 -32.70430 -30.90730 -30.11960 -29.94701 -29.27553 -25.93133 -25.75995 -22.85839 -21.98799 -21.37867 -21.13846 -20.40217 -19.09867 -17.78209 -17.37563 -16.82157 -16.66149 -15.76263 -15.59826 -15.51523 -15.09974 -14.66567 -14.12783 -13.87409 -13.72378 -13.51188 -13.49162 -13.17656 -12.89693 -12.82361 -12.54298 -12.39288 -12.19240 -12.07375 -11.61216 -11.54128 -11.49465 -11.40156 -11.31056 -11.18765 -11.07401 -10.76140 -10.71594 -10.62700 -10.49597 -10.45901 -9.91162 -9.85478 -9.64672 -9.47130 -9.17757 -8.14743 -7.95357 -7.34600 -4.93101 1.09819 1.99382 2.55326 2.91019 3.04038 3.13200 3.55895 3.73551 4.07677 4.09827 4.35775 4.48576 4.66711 4.90319 4.95499 4.99181 5.09614 5.11831 5.23596 5.27637 5.31454 5.51821 5.56989 5.63270 5.71698 5.73967 5.81919 5.83102 5.84550 5.87983 5.96015 6.08269 6.26037 6.27391 6.31996 6.36559 6.51530 6.55794 6.88255 6.92184 7.12743 7.13755 7.24018 7.29454 7.57835 7.82705 7.99956 8.33035 8.41866 9.64088 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.005010 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.233111 B = 5587.007779 C = 6762.340860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.152 3.848 3 H 0.089 0.911 4 C -0.113 4.113 5 C -0.122 4.122 6 H 0.093 0.907 7 C -0.151 4.151 8 C 0.043 3.957 9 O -0.373 6.373 10 C 0.047 3.953 11 N -1.123 6.123 12 S 2.689 3.311 13 O -0.983 6.983 14 O -0.981 6.981 15 C -0.794 4.794 16 C 0.013 3.987 17 C -0.252 4.252 18 C 0.117 3.883 19 C -0.414 4.414 20 H 0.099 0.901 21 C 0.082 3.918 22 N -0.779 5.779 23 Si 0.914 3.086 24 H -0.264 1.264 25 H -0.285 1.285 26 H -0.239 1.239 27 C -0.215 4.215 28 C 0.005 3.995 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.409 0.591 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.293 0.707 44 H 0.107 0.893 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.654 -9.686 6.723 15.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.045 3.955 3 H 0.107 0.893 4 C -0.152 4.152 5 C -0.141 4.141 6 H 0.111 0.889 7 C -0.189 4.189 8 C -0.034 4.034 9 O -0.292 6.292 10 C -0.029 4.029 11 N -0.880 5.880 12 S 2.787 3.213 13 O -0.973 6.973 14 O -0.971 6.971 15 C -0.889 4.889 16 C -0.008 4.008 17 C -0.272 4.272 18 C 0.113 3.887 19 C -0.440 4.440 20 H 0.117 0.883 21 C -0.142 4.142 22 N -0.400 5.400 23 Si 0.739 3.261 24 H -0.190 1.190 25 H -0.212 1.212 26 H -0.162 1.162 27 C -0.235 4.235 28 C -0.015 4.015 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.244 0.756 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.125 0.875 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.769 -9.349 5.915 14.758 hybrid contribution 0.019 0.464 0.337 0.573 sum -9.749 -8.885 6.252 14.597 Atomic orbital electron populations 1.22323 0.95277 1.02323 1.03059 1.20727 0.93890 0.96559 0.84311 0.89253 1.21953 0.94511 1.01123 0.97582 1.22567 0.95158 1.01951 0.94423 0.88900 1.23009 0.99652 0.98442 0.97802 1.23362 0.98553 0.96547 0.84944 1.89182 1.32849 1.81880 1.25260 1.23814 0.86504 0.95677 0.96936 1.56015 1.82799 1.18919 1.30293 1.01405 0.74308 0.73242 0.72342 1.93510 1.82771 1.63022 1.58022 1.93493 1.53356 1.66347 1.83908 1.29222 1.13482 1.11267 1.34918 1.20199 0.97691 0.91627 0.91234 1.21067 0.93036 1.00672 1.12394 1.17900 0.92253 0.92435 0.86104 1.19864 0.99537 0.90619 1.33986 0.88300 1.26376 0.96776 0.97518 0.93528 1.69675 1.33011 1.07512 1.29788 0.86250 0.79781 0.78593 0.81515 1.18978 1.21199 1.16180 1.21026 0.97195 0.96733 1.08575 1.20187 0.91266 0.97165 0.92894 0.91804 0.90963 0.92422 0.90330 0.91232 0.90614 0.90718 0.89550 0.92812 0.92722 0.88078 0.75647 0.87406 0.87714 0.89598 0.87488 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.52 37.16 0.35 -1.41 16 2 C 0.15 1.75 2.77 -67.93 -0.19 1.56 16 3 H 0.09 1.13 7.26 -51.93 -0.38 0.75 16 4 C -0.11 -1.07 4.16 -26.73 -0.11 -1.18 16 5 C -0.12 -1.46 3.11 -89.05 -0.28 -1.74 16 6 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 7 C -0.15 -1.56 6.73 -25.17 -0.17 -1.73 16 8 C 0.04 0.48 7.63 37.93 0.29 0.77 16 9 O -0.37 -5.72 11.65 -35.23 -0.41 -6.14 16 10 C 0.05 0.65 5.54 37.93 0.21 0.86 16 11 N -1.12 -14.51 3.63 -4.89 -0.02 -14.52 16 12 S 2.69 47.26 5.65 -107.50 -0.61 46.65 16 13 O -0.98 -19.48 17.26 -57.17 -0.99 -20.47 16 14 O -0.98 -19.22 16.48 -57.17 -0.94 -20.17 16 15 C -0.79 -15.69 5.32 -39.29 -0.21 -15.90 16 16 C 0.01 0.26 8.89 -39.66 -0.35 -0.09 16 17 C -0.25 -5.65 7.18 -38.87 -0.28 -5.93 16 18 C 0.12 2.77 5.10 -106.82 -0.55 2.23 16 19 C -0.41 -10.28 9.57 -37.74 -0.36 -10.64 16 20 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 21 C 0.08 1.96 5.40 -17.34 -0.09 1.87 16 22 N -0.78 -18.90 13.93 55.55 0.77 -18.13 16 23 Si 0.91 19.46 24.52 -169.99 -4.17 15.29 16 24 H -0.26 -5.41 6.71 56.52 0.38 -5.03 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.24 -5.35 6.86 56.52 0.39 -4.96 16 27 C -0.21 -4.76 9.80 -38.88 -0.38 -5.14 16 28 C 0.00 0.10 7.55 -39.66 -0.30 -0.20 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.89 7.61 -51.93 -0.40 0.49 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.57 7.96 -51.93 -0.41 0.16 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.61 7.73 -51.93 -0.40 0.21 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.64 6.32 -51.93 -0.33 0.31 16 39 H 0.10 1.59 5.04 -51.93 -0.26 1.32 16 40 H 0.41 4.41 7.22 -34.47 -0.25 4.16 16 41 H 0.11 2.00 7.59 -52.49 -0.40 1.60 16 42 H 0.11 2.31 4.73 -52.48 -0.25 2.06 16 43 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 44 H 0.11 2.24 8.06 -52.48 -0.42 1.82 16 45 H 0.11 2.05 7.58 -52.49 -0.40 1.65 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -29.41 362.52 -9.76 -39.17 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -6.45 Total: 9.52 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: -2.41 Total: -36.68 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.76 Total: -32.65 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -2.34 Total: -46.77 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.17 Total: 15.29 kcal Atomic # 16 Polarization: 47.26 SS G_CDS: -0.61 Total: 46.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.41 -9.76 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771621625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.630 kcal (2) G-P(sol) polarization free energy of solvation -29.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds