Wall clock time and date at job start Tue Mar 31 2020 23:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47666 * 2 1 4 4 C 1.53003 * 109.47401 * 120.00013 * 2 1 3 5 5 C 1.53005 * 109.47406 * 184.99955 * 4 2 1 6 6 H 1.08993 * 110.45317 * 52.39266 * 5 4 2 7 7 C 1.54505 * 110.51188 * 175.00157 * 5 4 2 8 8 C 1.54469 * 104.06503 * 118.64245 * 7 5 4 9 9 O 1.44428 * 104.80275 * 23.98098 * 8 7 5 10 10 C 1.44426 * 105.27156 * 319.48393 * 9 8 7 11 11 N 1.46498 * 109.47389 * 239.99954 * 2 1 3 12 12 S 1.65600 * 120.00007 * 94.72098 * 11 2 1 13 13 O 1.42101 * 106.40231 * 178.82111 * 12 11 2 14 14 O 1.42098 * 106.40326 * 311.74009 * 12 11 2 15 15 C 1.76195 * 107.21808 * 65.28195 * 12 11 2 16 16 C 1.38639 * 119.74729 * 269.72491 * 15 12 11 17 17 C 1.37618 * 120.24557 * 179.76311 * 16 15 12 18 18 C 1.40717 * 119.74604 * 0.48515 * 17 16 15 19 19 C 1.41401 * 120.24142 * 179.79059 * 18 17 16 20 20 H 1.07997 * 119.99700 * 150.21202 * 19 18 17 21 21 C 1.39942 * 120.00051 * 330.20645 * 19 18 17 22 22 N 1.30820 * 119.99929 * 161.73794 * 21 19 18 23 23 Si 1.86800 * 120.00285 * 341.73736 * 21 19 18 24 24 H 1.48504 * 109.46987 * 95.40938 * 23 21 19 25 25 H 1.48493 * 109.47292 * 215.41104 * 23 21 19 26 26 H 1.48498 * 109.46947 * 335.41145 * 23 21 19 27 27 C 1.40708 * 119.51046 * 359.76923 * 18 17 16 28 28 C 1.37615 * 119.75019 * 0.02562 * 27 18 17 29 29 H 1.08995 * 109.46909 * 299.99906 * 1 2 3 30 30 H 1.08999 * 109.47111 * 60.00082 * 1 2 3 31 31 H 1.09005 * 109.46765 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46772 * 304.99857 * 4 2 1 33 33 H 1.09004 * 109.47152 * 64.99831 * 4 2 1 34 34 H 1.09002 * 110.51059 * 237.28886 * 7 5 4 35 35 H 1.09004 * 110.51277 * 359.97438 * 7 5 4 36 36 H 1.09005 * 110.37146 * 142.80845 * 8 7 5 37 37 H 1.08997 * 110.37654 * 265.03334 * 8 7 5 38 38 H 1.08997 * 110.37261 * 281.68193 * 10 9 8 39 39 H 1.09000 * 110.36931 * 159.34596 * 10 9 8 40 40 H 0.97000 * 120.00142 * 275.00271 * 11 2 1 41 41 H 1.07999 * 119.87592 * 0.02562 * 16 15 12 42 42 H 1.08005 * 120.12712 * 180.23387 * 17 16 15 43 43 H 0.97006 * 120.00530 * 180.02562 * 22 21 19 44 44 H 1.08009 * 120.12687 * 179.97438 * 27 18 17 45 45 H 1.07998 * 119.87955 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3137 6 1 3.8773 0.4269 1.2226 7 6 4.0958 -1.2249 2.6294 8 6 5.0045 -2.3844 2.1646 9 8 5.4014 -2.0270 0.8227 10 6 4.2157 -1.4756 0.2095 11 7 2.0184 -0.6906 -1.1961 12 16 2.4057 0.1765 -2.5527 13 8 2.8665 -0.7646 -3.5125 14 8 1.3170 1.0585 -2.7896 15 6 3.7882 1.1905 -2.1466 16 6 3.5818 2.4664 -1.6452 17 6 4.6542 3.2653 -1.3200 18 6 5.9639 2.7863 -1.5077 19 6 7.0734 3.5999 -1.1813 20 1 7.9993 3.1466 -0.8595 21 6 6.9717 4.9925 -1.2752 22 7 7.8340 5.7547 -0.6534 23 14 5.6045 5.7629 -2.2885 24 1 4.4627 6.1029 -1.4020 25 1 6.1083 6.9973 -2.9422 26 1 5.1557 4.8008 -3.3269 27 6 6.1614 1.4916 -2.0223 28 6 5.0742 0.7086 -2.3366 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2617 2.1369 33 1 1.7517 -1.7716 1.2056 34 1 4.6728 -0.4877 3.1878 35 1 3.2720 -1.6038 3.2343 36 1 5.8791 -2.4634 2.8105 37 1 4.4503 -3.3229 2.1611 38 1 3.5399 -2.2745 -0.0958 39 1 4.4841 -0.8566 -0.6466 40 1 2.1110 -1.6562 -1.1949 41 1 2.5757 2.8333 -1.5054 42 1 4.4912 4.2576 -0.9260 43 1 7.7633 6.7200 -0.7181 44 1 7.1624 1.1141 -2.1707 45 1 5.2233 -0.2856 -2.7313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771621625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:28 Heat of formation + Delta-G solvation = -139.239431 kcal Electronic energy + Delta-G solvation = -29032.244479 eV Core-core repulsion = 25139.756938 eV Total energy + Delta-G solvation = -3892.487541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.56994 -39.62394 -38.29037 -37.69817 -36.79904 -35.80235 -33.69273 -32.67343 -31.68747 -31.09067 -30.17719 -27.54480 -26.78737 -23.81514 -23.65834 -22.89302 -22.31949 -21.32932 -20.46809 -19.57727 -18.84911 -18.30930 -17.69511 -17.24687 -16.85393 -16.55565 -16.12913 -16.07824 -15.82436 -15.50334 -15.01763 -14.70956 -14.61942 -14.43625 -14.30578 -14.24868 -13.96446 -13.71762 -13.35997 -13.12388 -13.06922 -13.02295 -12.86193 -12.80508 -12.58709 -12.52846 -12.34815 -12.19874 -12.08837 -11.69247 -11.63139 -11.57814 -11.46358 -11.30357 -11.14554 -10.65978 -10.33365 -9.91863 -9.67765 -9.13750 -6.79589 -0.35524 0.27297 0.79076 1.18986 1.32459 1.40970 2.00059 2.15532 2.42281 2.88038 3.15384 3.31119 3.53220 3.59874 3.80692 4.01710 4.12065 4.14320 4.17015 4.25886 4.32963 4.40131 4.40698 4.56762 4.58738 4.76258 4.78838 4.81988 4.84778 4.89298 4.95091 5.00209 5.02616 5.11663 5.12153 5.19650 5.34992 5.37271 5.44306 5.46894 5.50438 5.52559 5.73863 5.98033 6.02761 6.19654 6.22118 6.51469 6.59982 7.91765 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.005010 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.233111 B = 5587.007779 C = 6762.340860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.143 3.857 3 H 0.075 0.925 4 C -0.102 4.102 5 C -0.123 4.123 6 H 0.062 0.938 7 C -0.145 4.145 8 C 0.035 3.965 9 O -0.411 6.411 10 C 0.039 3.961 11 N -1.105 6.105 12 S 2.717 3.283 13 O -1.002 7.002 14 O -0.995 6.995 15 C -0.788 4.788 16 C 0.012 3.988 17 C -0.265 4.265 18 C 0.108 3.892 19 C -0.455 4.455 20 H 0.069 0.931 21 C 0.056 3.944 22 N -0.815 5.815 23 Si 0.956 3.044 24 H -0.248 1.248 25 H -0.269 1.269 26 H -0.257 1.257 27 C -0.234 4.234 28 C 0.009 3.991 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.424 0.576 41 H 0.132 0.868 42 H 0.108 0.892 43 H 0.303 0.697 44 H 0.107 0.893 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 -11.409 7.631 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.141 4.141 5 C -0.142 4.142 6 H 0.080 0.920 7 C -0.183 4.183 8 C -0.041 4.041 9 O -0.330 6.330 10 C -0.038 4.038 11 N -0.868 5.868 12 S 2.811 3.189 13 O -0.992 6.992 14 O -0.985 6.985 15 C -0.880 4.880 16 C -0.008 4.008 17 C -0.285 4.285 18 C 0.105 3.895 19 C -0.482 4.482 20 H 0.087 0.913 21 C -0.164 4.164 22 N -0.438 5.438 23 Si 0.779 3.221 24 H -0.173 1.173 25 H -0.195 1.195 26 H -0.181 1.181 27 C -0.254 4.254 28 C -0.010 4.010 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.261 0.739 41 H 0.150 0.850 42 H 0.126 0.874 43 H 0.114 0.886 44 H 0.126 0.874 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.220 -11.051 6.839 18.538 hybrid contribution 0.967 0.720 0.062 1.207 sum -12.253 -10.331 6.901 17.450 Atomic orbital electron populations 1.22300 0.93731 1.03606 1.03073 1.21000 0.95066 0.96068 0.84225 0.90669 1.21940 0.92241 1.02654 0.97259 1.22534 0.97039 0.99915 0.94743 0.91955 1.22997 1.00340 0.97799 0.97152 1.23613 0.99390 0.97839 0.83257 1.89138 1.34239 1.82295 1.27359 1.23914 0.86684 0.96403 0.96770 1.55569 1.82073 1.19416 1.29715 1.00619 0.73090 0.72579 0.72576 1.93484 1.82963 1.63126 1.59669 1.93482 1.53143 1.67287 1.84564 1.29828 1.14564 1.11632 1.31929 1.20503 0.98350 0.91573 0.90326 1.21193 0.93007 1.01293 1.12973 1.18044 0.92609 0.92850 0.86041 1.19771 0.99184 0.91656 1.37576 0.91260 1.26867 0.98325 0.97316 0.93858 1.69676 1.34553 1.08260 1.31301 0.85617 0.78391 0.78005 0.80134 1.17278 1.19519 1.18133 1.21198 0.98071 0.96852 1.09300 1.20408 0.91166 0.97595 0.91864 0.89668 0.93138 0.90532 0.87862 0.88684 0.91606 0.87469 0.89151 0.90474 0.90317 0.90749 0.73879 0.84985 0.87415 0.88589 0.87439 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.52 71.98 0.69 -2.08 16 2 C 0.14 2.78 2.77 44.99 0.12 2.91 16 3 H 0.08 1.71 7.26 -2.39 -0.02 1.69 16 4 C -0.10 -1.49 4.16 30.60 0.13 -1.37 16 5 C -0.12 -2.68 3.11 -9.78 -0.03 -2.71 16 6 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 7 C -0.15 -2.62 6.73 31.61 0.21 -2.40 16 8 C 0.04 0.72 7.63 72.48 0.55 1.27 16 9 O -0.41 -12.29 11.65 -148.98 -1.74 -14.03 16 10 C 0.04 1.00 5.54 72.48 0.40 1.40 16 11 N -1.10 -25.19 3.63 -169.39 -0.61 -25.80 16 12 S 2.72 89.75 5.65 -56.49 -0.32 89.43 16 13 O -1.00 -37.66 17.26 -128.00 -2.21 -39.87 16 14 O -0.99 -36.63 16.48 -128.00 -2.11 -38.74 16 15 C -0.79 -30.40 5.32 22.46 0.12 -30.28 16 16 C 0.01 0.49 8.89 22.22 0.20 0.68 16 17 C -0.26 -12.00 7.18 22.73 0.16 -11.83 16 18 C 0.11 5.32 5.10 -21.29 -0.11 5.21 16 19 C -0.45 -24.04 9.57 23.46 0.22 -23.82 16 20 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 21 C 0.06 2.82 5.40 85.26 0.46 3.28 16 22 N -0.81 -41.20 13.93 21.83 0.30 -40.90 16 23 Si 0.96 40.37 24.52 68.60 1.68 42.05 16 24 H -0.25 -9.73 6.71 99.48 0.67 -9.06 16 25 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 26 H -0.26 -11.52 6.86 99.48 0.68 -10.84 16 27 C -0.23 -10.75 9.80 22.73 0.22 -10.52 16 28 C 0.01 0.38 7.55 22.22 0.17 0.55 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.07 7.61 -2.39 -0.02 1.06 16 31 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 0.98 7.96 -2.38 -0.02 0.97 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 1.24 7.73 -2.39 -0.02 1.22 16 36 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.58 6.32 -2.39 -0.02 1.57 16 39 H 0.07 2.28 5.04 -2.39 -0.01 2.27 16 40 H 0.42 7.54 7.22 -96.75 -0.70 6.84 16 41 H 0.13 4.64 7.59 -2.91 -0.02 4.62 16 42 H 0.11 4.76 4.73 -2.91 -0.01 4.74 16 43 H 0.30 13.58 8.30 -92.70 -0.77 12.81 16 44 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 45 H 0.13 4.67 7.58 -2.91 -0.02 4.65 16 Total: -1.00 -66.05 362.52 -1.23 -67.29 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.25 Total: 30.29 kcal Atomic # 6 Polarization: -73.23 SS G_CDS: 3.52 Total: -69.71 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -0.31 Total: -66.70 kcal Atomic # 8 Polarization: -86.59 SS G_CDS: -6.05 Total: -92.64 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.68 Total: 42.05 kcal Atomic # 16 Polarization: 89.75 SS G_CDS: -0.32 Total: 89.43 kcal Total: -66.05 -1.23 -67.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771621625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.952 kcal (2) G-P(sol) polarization free energy of solvation -66.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds