Wall clock time and date at job start Tue Mar 31 2020 23:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46601 * 2 1 4 4 C 1.52998 * 109.47150 * 119.99837 * 2 1 3 5 5 C 1.52998 * 109.47335 * 185.00179 * 4 2 1 6 6 H 1.09007 * 110.90684 * 302.87125 * 5 4 2 7 7 C 1.55300 * 110.84949 * 179.28715 * 5 4 2 8 8 C 1.54954 * 100.93888 * 207.67443 * 7 5 4 9 9 O 1.43645 * 105.13431 * 36.44719 * 8 7 5 10 10 C 1.43239 * 109.97150 * 335.56733 * 9 8 7 11 11 N 1.46498 * 109.47028 * 240.00330 * 2 1 3 12 12 S 1.65600 * 120.00329 * 94.99796 * 11 2 1 13 13 O 1.42097 * 106.40153 * 178.53669 * 12 11 2 14 14 O 1.42096 * 106.40077 * 311.46008 * 12 11 2 15 15 C 1.76199 * 107.21563 * 65.00095 * 12 11 2 16 16 C 1.38644 * 119.74706 * 269.72359 * 15 12 11 17 17 C 1.37615 * 120.24447 * 179.76465 * 16 15 12 18 18 C 1.40711 * 119.74929 * 0.53178 * 17 16 15 19 19 C 1.41387 * 120.24405 * 179.74293 * 18 17 16 20 20 H 1.07997 * 120.00207 * 24.36312 * 19 18 17 21 21 C 1.39949 * 120.00210 * 204.35892 * 19 18 17 22 22 N 1.30832 * 119.99535 * 17.86986 * 21 19 18 23 23 Si 1.86799 * 120.00567 * 197.86658 * 21 19 18 24 24 H 1.48504 * 109.46839 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46878 * 119.99825 * 23 21 19 26 26 H 1.48494 * 109.47578 * 240.00181 * 23 21 19 27 27 C 1.40712 * 119.51015 * 359.72482 * 18 17 16 28 28 C 1.37622 * 119.74378 * 359.97438 * 27 18 17 29 29 H 1.08994 * 109.47322 * 60.00024 * 1 2 3 30 30 H 1.09003 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47118 * 299.99899 * 1 2 3 32 32 H 1.08996 * 109.46948 * 65.00169 * 4 2 1 33 33 H 1.08996 * 109.47345 * 305.00185 * 4 2 1 34 34 H 1.08997 * 111.12656 * 325.59309 * 7 5 4 35 35 H 1.08997 * 111.12670 * 89.71627 * 7 5 4 36 36 H 1.08999 * 110.31229 * 277.52922 * 8 7 5 37 37 H 1.09000 * 110.30585 * 155.35652 * 8 7 5 38 38 H 1.08999 * 109.82825 * 121.22896 * 10 9 8 39 39 H 1.09003 * 109.82860 * 242.20217 * 10 9 8 40 40 H 0.97004 * 119.99590 * 274.99838 * 11 2 1 41 41 H 1.08003 * 119.86994 * 359.97438 * 16 15 12 42 42 H 1.08003 * 120.12178 * 180.23493 * 17 16 15 43 43 H 0.96999 * 119.99486 * 179.97438 * 22 21 19 44 44 H 1.07995 * 120.12943 * 180.02562 * 27 18 17 45 45 H 1.07998 * 119.87613 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3138 6 1 4.0222 -1.0211 0.4122 7 6 4.1159 -1.3207 2.5817 8 6 5.4169 -0.5152 2.8258 9 8 5.0934 0.8376 2.4670 10 6 4.0030 0.8500 1.5383 11 7 2.0183 -0.6905 -1.1962 12 16 2.4121 0.1772 -2.5505 13 8 2.8776 -0.7634 -3.5085 14 8 1.3246 1.0593 -2.7922 15 6 3.7927 1.1910 -2.1372 16 6 3.5839 2.4668 -1.6362 17 6 4.6547 3.2655 -1.3055 18 6 5.9653 2.7870 -1.4880 19 6 7.0730 3.6008 -1.1568 20 1 6.9645 4.3900 -0.4276 21 6 8.3102 3.3835 -1.7738 22 7 8.3760 2.6904 -2.8815 23 14 9.8677 4.0831 -1.0160 24 1 9.5252 4.8217 0.2260 25 1 10.8009 2.9747 -0.6908 26 1 10.5150 5.0085 -1.9802 27 6 6.1652 1.4926 -2.0022 28 6 5.0795 0.7090 -2.3203 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7517 -1.7714 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 3.4269 -1.2175 3.4199 35 1 4.3342 -2.3699 2.3826 36 1 6.2201 -0.8928 2.1929 37 1 5.7041 -0.5697 3.8759 38 1 3.1736 1.4253 1.9496 39 1 4.3264 1.2882 0.5941 40 1 2.1110 -1.6561 -1.1949 41 1 2.5770 2.8338 -1.5019 42 1 4.4896 4.2576 -0.9118 43 1 9.2334 2.5402 -3.3094 44 1 7.1668 1.1151 -2.1460 45 1 5.2305 -0.2850 -2.7147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771621630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:34 Heat of formation + Delta-G solvation = -125.163435 kcal Electronic energy + Delta-G solvation = -28991.540003 eV Core-core repulsion = 25099.662844 eV Total energy + Delta-G solvation = -3891.877160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.42124 -37.58742 -36.91847 -36.32503 -35.11055 -34.03319 -32.64221 -30.25016 -30.14564 -29.47747 -29.10175 -25.91980 -25.80311 -22.64911 -21.49656 -21.39337 -21.06755 -20.20155 -19.01774 -17.62272 -17.24340 -16.52649 -16.42328 -15.88978 -15.74214 -15.43097 -14.55272 -14.37449 -14.13176 -14.00168 -13.47269 -13.38628 -13.17942 -13.04597 -12.80264 -12.52664 -12.36033 -12.18975 -12.12403 -11.76599 -11.50810 -11.44769 -11.38328 -11.34845 -11.26559 -11.17055 -11.05793 -10.86824 -10.74914 -10.61675 -10.40869 -10.37787 -9.77128 -9.64520 -9.48120 -9.18255 -9.08122 -7.94714 -7.69586 -7.13096 -4.77839 1.26282 2.25797 2.88911 2.91024 2.93875 2.97858 3.67912 3.72545 4.10969 4.25244 4.42887 4.55145 4.67977 4.97772 5.04577 5.12323 5.20519 5.24361 5.39015 5.41714 5.49322 5.56767 5.60975 5.69926 5.79440 5.86760 5.90535 5.93473 5.98929 6.05565 6.12685 6.31179 6.33931 6.39141 6.44405 6.69574 6.72295 6.92648 7.04948 7.28421 7.30136 7.35406 7.43494 7.64540 7.78874 7.98231 8.33880 8.53363 8.66043 9.78185 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.004930 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.806812 B = 5677.941887 C = 7298.969067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.152 3.848 3 H 0.088 0.912 4 C -0.110 4.110 5 C -0.123 4.123 6 H 0.092 0.908 7 C -0.152 4.152 8 C 0.051 3.949 9 O -0.380 6.380 10 C 0.048 3.952 11 N -1.121 6.121 12 S 2.689 3.311 13 O -0.987 6.987 14 O -0.985 6.985 15 C -0.788 4.788 16 C -0.002 4.002 17 C -0.235 4.235 18 C 0.142 3.858 19 C -0.430 4.430 20 H 0.088 0.912 21 C 0.072 3.928 22 N -0.764 5.764 23 Si 0.915 3.085 24 H -0.256 1.256 25 H -0.268 1.268 26 H -0.271 1.271 27 C -0.180 4.180 28 C -0.014 4.014 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.409 0.591 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.288 0.712 44 H 0.121 0.879 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 -7.163 9.673 13.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.045 3.955 3 H 0.106 0.894 4 C -0.149 4.149 5 C -0.141 4.141 6 H 0.110 0.890 7 C -0.190 4.190 8 C -0.026 4.026 9 O -0.299 6.299 10 C -0.028 4.028 11 N -0.877 5.877 12 S 2.788 3.212 13 O -0.977 6.977 14 O -0.975 6.975 15 C -0.885 4.885 16 C -0.022 4.022 17 C -0.255 4.255 18 C 0.139 3.861 19 C -0.457 4.457 20 H 0.106 0.894 21 C -0.150 4.150 22 N -0.386 5.386 23 Si 0.738 3.262 24 H -0.179 1.179 25 H -0.193 1.193 26 H -0.196 1.196 27 C -0.201 4.201 28 C -0.034 4.034 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.241 0.759 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.138 0.862 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.873 -6.938 8.735 13.102 hybrid contribution 1.300 -0.071 0.512 1.399 sum -5.573 -7.009 9.247 12.872 Atomic orbital electron populations 1.22332 0.95383 1.02295 1.03015 1.20696 0.93825 0.96550 0.84450 0.89421 1.21848 0.94237 1.01272 0.97576 1.22760 0.96199 0.96273 0.98910 0.88994 1.23318 0.97585 1.00056 0.98045 1.23307 0.96496 0.82723 1.00087 1.88427 1.52610 1.25396 1.63512 1.23420 0.89200 0.95776 0.94447 1.55880 1.82778 1.18795 1.30211 1.01332 0.74334 0.73219 0.72309 1.93494 1.82688 1.63277 1.58282 1.93479 1.53783 1.66318 1.83903 1.29067 1.13184 1.11282 1.34921 1.20139 0.97474 0.91706 0.92876 1.20996 0.92735 0.99471 1.12306 1.17811 0.91831 0.91052 0.85449 1.19983 0.93158 1.13580 1.19001 0.89392 1.26142 1.01607 0.93717 0.93530 1.69837 1.28482 1.28049 1.12271 0.86131 0.79922 0.79669 0.80471 1.17884 1.19252 1.19564 1.21310 0.97694 0.94450 1.06619 1.20197 0.91395 0.97573 0.94281 0.90951 0.92441 0.91869 0.91014 0.90562 0.90648 0.90318 0.92319 0.90390 0.91926 0.89092 0.75880 0.87976 0.88290 0.90029 0.86171 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.52 37.16 0.35 -1.52 16 2 C 0.15 1.86 2.69 -67.93 -0.18 1.68 16 3 H 0.09 1.19 6.43 -51.93 -0.33 0.85 16 4 C -0.11 -1.11 4.20 -26.73 -0.11 -1.23 16 5 C -0.12 -1.51 2.92 -88.68 -0.26 -1.77 16 6 H 0.09 1.24 7.76 -51.93 -0.40 0.83 16 7 C -0.15 -1.60 6.62 -24.48 -0.16 -1.76 16 8 C 0.05 0.65 7.78 38.19 0.30 0.95 16 9 O -0.38 -6.43 11.36 -35.23 -0.40 -6.83 16 10 C 0.05 0.74 6.49 37.88 0.25 0.98 16 11 N -1.12 -15.32 4.93 -4.89 -0.02 -15.34 16 12 S 2.69 50.03 5.65 -107.50 -0.61 49.43 16 13 O -0.99 -20.94 17.26 -57.17 -0.99 -21.93 16 14 O -0.98 -20.22 16.51 -57.17 -0.94 -21.16 16 15 C -0.79 -16.48 5.51 -39.29 -0.22 -16.69 16 16 C 0.00 -0.04 7.89 -39.66 -0.31 -0.35 16 17 C -0.23 -5.34 9.39 -38.88 -0.36 -5.70 16 18 C 0.14 3.52 5.57 -106.83 -0.60 2.92 16 19 C -0.43 -10.49 9.05 -37.74 -0.34 -10.84 16 20 H 0.09 2.05 7.91 -52.49 -0.42 1.64 16 21 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 22 N -0.76 -18.30 10.95 55.55 0.61 -17.69 16 23 Si 0.91 17.21 29.60 -169.99 -5.03 12.18 16 24 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 25 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 26 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 27 C -0.18 -4.40 8.70 -38.87 -0.34 -4.74 16 28 C -0.01 -0.32 9.49 -39.66 -0.38 -0.69 16 29 H 0.07 0.94 7.64 -51.93 -0.40 0.54 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.88 7.74 -51.93 -0.40 0.48 16 39 H 0.09 1.68 6.31 -51.93 -0.33 1.35 16 40 H 0.41 4.61 8.84 -34.47 -0.30 4.31 16 41 H 0.10 1.96 7.59 -52.48 -0.40 1.56 16 42 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 43 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 44 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 45 H 0.10 2.12 7.60 -52.49 -0.40 1.72 16 LS Contribution 373.81 15.07 5.63 5.63 Total: -1.00 -30.04 373.81 -10.84 -40.87 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -6.63 Total: 12.03 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: -2.45 Total: -37.18 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.58 Total: -33.04 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -2.33 Total: -49.92 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Atomic # 16 Polarization: 50.03 SS G_CDS: -0.61 Total: 49.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.04 -10.84 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771621630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.289 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds