Wall clock time and date at job start Tue Mar 31 2020 23:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47147 * 2 1 4 4 C 1.52996 * 109.47154 * 239.99621 * 2 1 3 5 5 C 1.53007 * 109.47053 * 175.00260 * 4 2 1 6 6 H 1.09006 * 110.80221 * 308.62276 * 5 4 2 7 7 C 1.54812 * 110.90650 * 185.00164 * 5 4 2 8 8 C 1.54097 * 104.18579 * 220.91717 * 7 5 4 9 9 O 1.43738 * 107.29708 * 357.97215 * 8 7 5 10 10 C 1.44385 * 106.97252 * 26.50985 * 9 8 7 11 11 N 1.46497 * 109.47201 * 119.99723 * 2 1 3 12 12 S 1.65598 * 120.00049 * 265.00385 * 11 2 1 13 13 O 1.42102 * 106.40228 * 178.53514 * 12 11 2 14 14 O 1.42096 * 106.40129 * 311.45603 * 12 11 2 15 15 C 1.76201 * 107.21943 * 64.99686 * 12 11 2 16 16 C 1.38631 * 119.74940 * 269.72413 * 15 12 11 17 17 C 1.37621 * 120.25302 * 179.76042 * 16 15 12 18 18 C 1.40712 * 119.73764 * 0.53840 * 17 16 15 19 19 C 1.41396 * 120.24416 * 179.74141 * 18 17 16 20 20 H 1.08000 * 119.99951 * 24.35874 * 19 18 17 21 21 C 1.39942 * 120.00429 * 204.35816 * 19 18 17 22 22 N 1.30824 * 119.99966 * 17.86480 * 21 19 18 23 23 Si 1.86798 * 120.00171 * 197.86704 * 21 19 18 24 24 H 1.48496 * 109.47463 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47119 * 120.00249 * 23 21 19 26 26 H 1.48498 * 109.47115 * 239.99859 * 23 21 19 27 27 C 1.40716 * 119.51606 * 359.72233 * 18 17 16 28 28 C 1.37619 * 119.74277 * 359.97438 * 27 18 17 29 29 H 1.09000 * 109.47147 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47435 * 300.00605 * 1 2 3 31 31 H 1.09009 * 109.46912 * 60.00295 * 1 2 3 32 32 H 1.08998 * 109.47723 * 294.99976 * 4 2 1 33 33 H 1.09002 * 109.47453 * 55.00405 * 4 2 1 34 34 H 1.09002 * 110.48913 * 339.59615 * 7 5 4 35 35 H 1.09006 * 110.48801 * 102.10788 * 7 5 4 36 36 H 1.09006 * 109.87502 * 117.39470 * 8 7 5 37 37 H 1.09003 * 109.88247 * 238.54566 * 8 7 5 38 38 H 1.09006 * 110.61779 * 201.43726 * 10 9 8 39 39 H 1.08999 * 110.61944 * 78.44570 * 10 9 8 40 40 H 0.97003 * 120.00242 * 84.99210 * 11 2 1 41 41 H 1.08011 * 119.87524 * 0.02562 * 16 15 12 42 42 H 1.07992 * 120.13257 * 180.23543 * 17 16 15 43 43 H 0.97003 * 120.00102 * 179.97438 * 22 21 19 44 44 H 1.07998 * 120.12903 * 180.02562 * 27 18 17 45 45 H 1.07999 * 119.87396 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 1 3.8845 0.4231 -1.2051 7 6 4.1068 -1.2238 -2.6290 8 6 5.3726 -1.9890 -2.1968 9 8 5.5399 -1.7757 -0.7852 10 6 4.2289 -1.5131 -0.2403 11 7 2.0183 -0.6905 1.1962 12 16 2.4121 0.1773 2.5505 13 8 2.8122 -0.7696 3.5316 14 8 3.2435 1.2444 2.1155 15 6 0.9274 0.9149 3.1473 16 6 0.5584 2.1751 2.7028 17 6 -0.6017 2.7588 3.1584 18 6 -1.4083 2.0762 4.0876 19 6 -2.5995 2.6683 4.5669 20 1 -3.1045 3.4193 3.9775 21 6 -3.1243 2.2812 5.8051 22 7 -2.3677 1.6548 6.6693 23 14 -4.9051 2.6589 6.2241 24 1 -5.5412 3.3701 5.0863 25 1 -5.6321 1.3904 6.4845 26 1 -4.9574 3.5168 7.4351 27 6 -1.0211 0.7998 4.5359 28 6 0.1398 0.2328 4.0619 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7517 -1.7716 -1.2055 33 1 1.6054 -0.2618 -2.1370 34 1 3.3766 -1.9078 -3.0615 35 1 4.3585 -0.4365 -3.3397 36 1 5.2495 -3.0531 -2.3988 37 1 6.2395 -1.6055 -2.7349 38 1 4.3069 -0.9838 0.7094 39 1 3.6707 -2.4414 -0.1188 40 1 2.1109 -1.6561 1.1950 41 1 1.1814 2.6990 1.9930 42 1 -0.8892 3.7390 2.8080 43 1 -2.7314 1.3868 7.5277 44 1 -1.6330 0.2669 5.2486 45 1 0.4388 -0.7468 4.4043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771621632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:38 Heat of formation + Delta-G solvation = -122.945388 kcal Electronic energy + Delta-G solvation = -28008.705276 eV Core-core repulsion = 24116.924298 eV Total energy + Delta-G solvation = -3891.780978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.71643 -37.63155 -36.96672 -36.36324 -35.13628 -34.06568 -32.83398 -30.30720 -30.07427 -29.57612 -29.37158 -26.02873 -25.80792 -22.82629 -21.52358 -21.39139 -21.12187 -20.65555 -18.97607 -17.64590 -17.24385 -16.93290 -16.36912 -15.97024 -15.66767 -15.42300 -15.15831 -14.61762 -14.15552 -13.85167 -13.58230 -13.52325 -13.26350 -13.21741 -12.96474 -12.52864 -12.32467 -12.20124 -12.08626 -11.74254 -11.70480 -11.47629 -11.44911 -11.41219 -11.31766 -11.21817 -11.18840 -10.92005 -10.83421 -10.72634 -10.53727 -10.43134 -9.79393 -9.76458 -9.66927 -9.50156 -9.07935 -7.97094 -7.71637 -7.15746 -4.81735 1.24289 2.23643 2.85873 2.87947 2.90887 2.93629 3.64151 3.69193 3.84097 4.22182 4.31918 4.48543 4.57775 4.72299 4.84875 4.98679 5.12206 5.14974 5.25015 5.26513 5.36444 5.50166 5.53948 5.59703 5.66022 5.69613 5.73821 5.77103 5.87517 6.01616 6.04411 6.10511 6.12507 6.38904 6.52800 6.66560 6.69353 6.76910 6.90242 7.02630 7.26967 7.32753 7.41006 7.62278 7.75322 7.95167 8.30572 8.49737 8.63209 9.75700 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026493 B = 0.002829 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.648464 B = 9895.667345 C =10374.209207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.152 3.848 3 H 0.091 0.909 4 C -0.111 4.111 5 C -0.122 4.122 6 H 0.092 0.908 7 C -0.153 4.153 8 C 0.045 3.955 9 O -0.380 6.380 10 C 0.053 3.947 11 N -1.123 6.123 12 S 2.688 3.312 13 O -0.984 6.984 14 O -0.984 6.984 15 C -0.785 4.785 16 C 0.002 3.998 17 C -0.238 4.238 18 C 0.140 3.860 19 C -0.435 4.435 20 H 0.088 0.912 21 C 0.072 3.928 22 N -0.764 5.764 23 Si 0.916 3.084 24 H -0.257 1.257 25 H -0.268 1.268 26 H -0.270 1.270 27 C -0.184 4.184 28 C -0.013 4.013 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.408 0.592 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.289 0.711 44 H 0.122 0.878 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -5.693 -14.371 15.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.045 3.955 3 H 0.109 0.891 4 C -0.150 4.150 5 C -0.140 4.140 6 H 0.110 0.890 7 C -0.191 4.191 8 C -0.032 4.032 9 O -0.299 6.299 10 C -0.023 4.023 11 N -0.880 5.880 12 S 2.786 3.214 13 O -0.975 6.975 14 O -0.974 6.974 15 C -0.882 4.882 16 C -0.018 4.018 17 C -0.259 4.259 18 C 0.136 3.864 19 C -0.462 4.462 20 H 0.106 0.894 21 C -0.151 4.151 22 N -0.386 5.386 23 Si 0.739 3.261 24 H -0.180 1.180 25 H -0.192 1.192 26 H -0.195 1.195 27 C -0.204 4.204 28 C -0.034 4.034 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.242 0.758 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.139 0.861 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.558 -5.549 -13.681 15.451 hybrid contribution -1.732 -0.107 0.267 1.756 sum 2.826 -5.655 -13.413 14.828 Atomic orbital electron populations 1.22386 0.94913 1.02711 1.03534 1.20730 0.94188 0.96550 0.84082 0.89054 1.21867 0.93707 1.01517 0.97914 1.22785 0.95826 1.01273 0.94152 0.88962 1.23018 0.97539 1.00308 0.98197 1.23131 0.98074 0.99078 0.82899 1.88902 1.28505 1.92132 1.20396 1.23785 0.83174 0.97765 0.97615 1.55999 1.84228 1.19180 1.28568 1.01381 0.74999 0.73001 0.71972 1.93506 1.82682 1.62998 1.58301 1.93490 1.66064 1.55766 1.82051 1.29097 1.26802 1.09583 1.22679 1.20135 0.94687 0.92007 0.95021 1.21007 0.97440 1.00199 1.07207 1.17844 0.90346 0.90322 0.87869 1.19966 1.05987 1.18553 1.01737 0.89435 1.26147 1.00299 0.92846 0.95787 1.69833 1.36767 1.26051 1.05956 0.86115 0.80949 0.79461 0.79537 1.17991 1.19248 1.19520 1.21333 0.98189 0.96287 1.04614 1.20236 0.93415 0.96974 0.92742 0.92327 0.90212 0.92030 0.91022 0.90165 0.90592 0.90485 0.92651 0.90135 0.89221 0.92057 0.75828 0.87930 0.88254 0.89974 0.86062 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 9.52 37.16 0.35 -1.77 16 2 C 0.15 1.81 2.91 -67.94 -0.20 1.61 16 3 H 0.09 1.17 7.50 -51.93 -0.39 0.78 16 4 C -0.11 -1.01 4.33 -26.73 -0.12 -1.12 16 5 C -0.12 -1.26 3.09 -88.61 -0.27 -1.53 16 6 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 7 C -0.15 -1.26 6.60 -25.20 -0.17 -1.43 16 8 C 0.05 0.43 7.70 37.73 0.29 0.72 16 9 O -0.38 -5.15 11.52 -35.23 -0.41 -5.55 16 10 C 0.05 0.66 5.51 38.21 0.21 0.87 16 11 N -1.12 -15.39 3.44 -4.90 -0.02 -15.40 16 12 S 2.69 50.48 5.41 -107.50 -0.58 49.90 16 13 O -0.98 -21.07 17.26 -57.17 -0.99 -22.05 16 14 O -0.98 -20.28 16.59 -57.17 -0.95 -21.23 16 15 C -0.79 -16.67 5.08 -39.29 -0.20 -16.87 16 16 C 0.00 0.03 8.57 -39.66 -0.34 -0.31 16 17 C -0.24 -5.42 9.80 -38.87 -0.38 -5.80 16 18 C 0.14 3.45 5.58 -106.83 -0.60 2.85 16 19 C -0.44 -10.46 9.05 -37.74 -0.34 -10.80 16 20 H 0.09 1.99 7.91 -52.49 -0.41 1.57 16 21 C 0.07 1.63 5.14 -17.34 -0.09 1.54 16 22 N -0.76 -18.17 10.95 55.55 0.61 -17.56 16 23 Si 0.92 16.79 29.59 -169.99 -5.03 11.76 16 24 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 25 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 26 H -0.27 -4.91 7.11 56.52 0.40 -4.50 16 27 C -0.18 -4.50 8.70 -38.87 -0.34 -4.84 16 28 C -0.01 -0.30 9.49 -39.66 -0.38 -0.68 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.20 6.18 -51.93 -0.32 0.88 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.07 0.58 7.98 -51.93 -0.41 0.16 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.27 6.91 -51.93 -0.36 0.91 16 39 H 0.06 0.65 7.50 -51.93 -0.39 0.26 16 40 H 0.41 4.71 7.77 -34.47 -0.27 4.44 16 41 H 0.10 1.97 7.59 -52.48 -0.40 1.57 16 42 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 43 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 44 H 0.12 3.03 6.15 -52.49 -0.32 2.70 16 45 H 0.10 2.18 7.60 -52.49 -0.40 1.78 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -30.05 371.45 -10.93 -40.98 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -6.60 Total: 11.14 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: -2.56 Total: -37.56 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.59 Total: -32.97 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -2.34 Total: -48.84 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.76 kcal Atomic # 16 Polarization: 50.48 SS G_CDS: -0.58 Total: 49.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.05 -10.93 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771621632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.970 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds