Wall clock time and date at job start Tue Mar 31 2020 23:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47147 * 2 1 4 4 C 1.52996 * 109.47154 * 239.99621 * 2 1 3 5 5 C 1.53007 * 109.47053 * 175.00260 * 4 2 1 6 6 H 1.09006 * 110.80221 * 308.62276 * 5 4 2 7 7 C 1.54812 * 110.90650 * 185.00164 * 5 4 2 8 8 C 1.54097 * 104.18579 * 220.91717 * 7 5 4 9 9 O 1.43738 * 107.29708 * 357.97215 * 8 7 5 10 10 C 1.44385 * 106.97252 * 26.50985 * 9 8 7 11 11 N 1.46497 * 109.47201 * 119.99723 * 2 1 3 12 12 S 1.65598 * 120.00049 * 265.00385 * 11 2 1 13 13 O 1.42102 * 106.40228 * 178.53514 * 12 11 2 14 14 O 1.42096 * 106.40129 * 311.45603 * 12 11 2 15 15 C 1.76201 * 107.21943 * 64.99686 * 12 11 2 16 16 C 1.38631 * 119.74940 * 269.72413 * 15 12 11 17 17 C 1.37621 * 120.25302 * 179.76042 * 16 15 12 18 18 C 1.40712 * 119.73764 * 0.53840 * 17 16 15 19 19 C 1.41396 * 120.24416 * 179.74141 * 18 17 16 20 20 H 1.08000 * 119.99951 * 24.35874 * 19 18 17 21 21 C 1.39942 * 120.00429 * 204.35816 * 19 18 17 22 22 N 1.30824 * 119.99966 * 17.86480 * 21 19 18 23 23 Si 1.86798 * 120.00171 * 197.86704 * 21 19 18 24 24 H 1.48496 * 109.47463 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47119 * 120.00249 * 23 21 19 26 26 H 1.48498 * 109.47115 * 239.99859 * 23 21 19 27 27 C 1.40716 * 119.51606 * 359.72233 * 18 17 16 28 28 C 1.37619 * 119.74277 * 359.97438 * 27 18 17 29 29 H 1.09000 * 109.47147 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47435 * 300.00605 * 1 2 3 31 31 H 1.09009 * 109.46912 * 60.00295 * 1 2 3 32 32 H 1.08998 * 109.47723 * 294.99976 * 4 2 1 33 33 H 1.09002 * 109.47453 * 55.00405 * 4 2 1 34 34 H 1.09002 * 110.48913 * 339.59615 * 7 5 4 35 35 H 1.09006 * 110.48801 * 102.10788 * 7 5 4 36 36 H 1.09006 * 109.87502 * 117.39470 * 8 7 5 37 37 H 1.09003 * 109.88247 * 238.54566 * 8 7 5 38 38 H 1.09006 * 110.61779 * 201.43726 * 10 9 8 39 39 H 1.08999 * 110.61944 * 78.44570 * 10 9 8 40 40 H 0.97003 * 120.00242 * 84.99210 * 11 2 1 41 41 H 1.08011 * 119.87524 * 0.02562 * 16 15 12 42 42 H 1.07992 * 120.13257 * 180.23543 * 17 16 15 43 43 H 0.97003 * 120.00102 * 179.97438 * 22 21 19 44 44 H 1.07998 * 120.12903 * 180.02562 * 27 18 17 45 45 H 1.07999 * 119.87396 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 1 3.8845 0.4231 -1.2051 7 6 4.1068 -1.2238 -2.6290 8 6 5.3726 -1.9890 -2.1968 9 8 5.5399 -1.7757 -0.7852 10 6 4.2289 -1.5131 -0.2403 11 7 2.0183 -0.6905 1.1962 12 16 2.4121 0.1773 2.5505 13 8 2.8122 -0.7696 3.5316 14 8 3.2435 1.2444 2.1155 15 6 0.9274 0.9149 3.1473 16 6 0.5584 2.1751 2.7028 17 6 -0.6017 2.7588 3.1584 18 6 -1.4083 2.0762 4.0876 19 6 -2.5995 2.6683 4.5669 20 1 -3.1045 3.4193 3.9775 21 6 -3.1243 2.2812 5.8051 22 7 -2.3677 1.6548 6.6693 23 14 -4.9051 2.6589 6.2241 24 1 -5.5412 3.3701 5.0863 25 1 -5.6321 1.3904 6.4845 26 1 -4.9574 3.5168 7.4351 27 6 -1.0211 0.7998 4.5359 28 6 0.1398 0.2328 4.0619 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7517 -1.7716 -1.2055 33 1 1.6054 -0.2618 -2.1370 34 1 3.3766 -1.9078 -3.0615 35 1 4.3585 -0.4365 -3.3397 36 1 5.2495 -3.0531 -2.3988 37 1 6.2395 -1.6055 -2.7349 38 1 4.3069 -0.9838 0.7094 39 1 3.6707 -2.4414 -0.1188 40 1 2.1109 -1.6561 1.1950 41 1 1.1814 2.6990 1.9930 42 1 -0.8892 3.7390 2.8080 43 1 -2.7314 1.3868 7.5277 44 1 -1.6330 0.2669 5.2486 45 1 0.4388 -0.7468 4.4043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771621632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:37 Heat of formation + Delta-G solvation = -142.494477 kcal Electronic energy + Delta-G solvation = -28009.552988 eV Core-core repulsion = 24116.924298 eV Total energy + Delta-G solvation = -3892.628690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.55376 -39.39312 -38.26581 -37.72200 -36.78679 -35.80223 -33.73405 -32.06822 -31.32786 -31.05777 -30.27331 -27.60887 -26.85655 -23.65441 -23.24923 -22.97846 -22.26612 -21.45663 -20.40474 -19.41744 -18.75195 -18.19507 -17.64962 -17.15295 -16.94897 -16.58073 -16.07369 -16.03553 -15.77205 -15.19771 -14.96846 -14.63232 -14.59033 -14.27619 -14.13084 -13.97791 -13.84269 -13.59845 -13.32796 -13.11711 -13.03091 -12.93756 -12.87555 -12.80313 -12.64870 -12.55211 -12.37680 -12.15279 -11.97973 -11.68728 -11.53920 -11.52643 -11.39939 -11.32960 -11.18902 -10.61215 -10.31656 -9.75837 -9.52121 -8.86653 -6.63711 -0.29118 0.49885 1.07500 1.35909 1.41677 1.53139 2.11304 2.25945 2.54678 2.93506 3.03738 3.53544 3.56019 3.61799 3.77455 3.94300 4.12809 4.23841 4.29746 4.31731 4.32403 4.39216 4.41568 4.58482 4.75043 4.79914 4.84825 4.88701 4.89927 4.95462 4.98784 5.01481 5.09034 5.13257 5.19680 5.25328 5.33246 5.46407 5.53756 5.54850 5.61196 5.78446 5.94500 5.96339 6.16887 6.23154 6.50808 6.69817 6.82592 8.08591 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.026493 B = 0.002829 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.648464 B = 9895.667345 C =10374.209207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.145 3.855 3 H 0.082 0.918 4 C -0.100 4.100 5 C -0.123 4.123 6 H 0.075 0.925 7 C -0.143 4.143 8 C 0.035 3.965 9 O -0.414 6.414 10 C 0.043 3.957 11 N -1.105 6.105 12 S 2.715 3.285 13 O -1.011 7.011 14 O -1.000 7.000 15 C -0.790 4.790 16 C 0.004 3.996 17 C -0.253 4.253 18 C 0.114 3.886 19 C -0.465 4.465 20 H 0.093 0.907 21 C 0.033 3.967 22 N -0.800 5.800 23 Si 0.991 3.009 24 H -0.251 1.251 25 H -0.262 1.262 26 H -0.265 1.265 27 C -0.207 4.207 28 C -0.019 4.019 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.422 0.578 41 H 0.124 0.876 42 H 0.111 0.889 43 H 0.297 0.703 44 H 0.108 0.892 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 -6.303 -16.807 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.039 3.961 3 H 0.100 0.900 4 C -0.139 4.139 5 C -0.141 4.141 6 H 0.094 0.906 7 C -0.181 4.181 8 C -0.041 4.041 9 O -0.333 6.333 10 C -0.033 4.033 11 N -0.867 5.867 12 S 2.811 3.189 13 O -1.002 7.002 14 O -0.990 6.990 15 C -0.883 4.883 16 C -0.016 4.016 17 C -0.273 4.273 18 C 0.110 3.890 19 C -0.492 4.492 20 H 0.111 0.889 21 C -0.186 4.186 22 N -0.423 5.423 23 Si 0.811 3.189 24 H -0.174 1.174 25 H -0.186 1.186 26 H -0.189 1.189 27 C -0.227 4.227 28 C -0.040 4.040 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.258 0.742 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.109 0.891 44 H 0.126 0.874 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.845 -6.150 -16.112 17.669 hybrid contribution -1.345 0.025 0.922 1.631 sum 2.500 -6.125 -15.190 16.568 Atomic orbital electron populations 1.22355 0.94698 1.03309 1.02981 1.20988 0.94287 0.96488 0.84345 0.90012 1.21843 0.92620 1.02507 0.96947 1.22764 0.96583 1.00062 0.94728 0.90631 1.22996 0.97144 1.00791 0.97126 1.23391 0.99340 1.00327 0.81068 1.88861 1.29377 1.92417 1.22688 1.23887 0.83460 0.98776 0.97226 1.55535 1.83956 1.19727 1.27452 1.00514 0.73734 0.72442 0.72191 1.93463 1.82891 1.63450 1.60354 1.93467 1.66176 1.56989 1.82391 1.29539 1.27025 1.09768 1.21979 1.20376 0.94366 0.92011 0.94851 1.21224 0.97945 1.00821 1.07325 1.18173 0.91275 0.90724 0.88806 1.20245 1.06608 1.19588 1.02785 0.88927 1.27038 1.04392 0.92132 0.95051 1.69875 1.38797 1.26996 1.06673 0.85007 0.75194 0.79397 0.79327 1.17430 1.18614 1.18920 1.21331 0.99174 0.96805 1.05431 1.20400 0.93190 0.97453 0.92910 0.91170 0.93641 0.89719 0.89089 0.87436 0.88317 0.89270 0.91282 0.89354 0.91939 0.90336 0.74160 0.85838 0.87076 0.89148 0.87379 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 9.52 71.98 0.69 -3.14 16 2 C 0.15 3.14 2.91 44.99 0.13 3.27 16 3 H 0.08 1.96 7.50 -2.39 -0.02 1.95 16 4 C -0.10 -1.44 4.33 30.60 0.13 -1.31 16 5 C -0.12 -2.22 3.09 -9.49 -0.03 -2.25 16 6 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 7 C -0.14 -1.86 6.60 31.58 0.21 -1.65 16 8 C 0.03 0.59 7.70 72.35 0.56 1.15 16 9 O -0.41 -10.80 11.52 -148.98 -1.72 -12.52 16 10 C 0.04 1.00 5.51 72.66 0.40 1.40 16 11 N -1.11 -28.88 3.44 -169.40 -0.58 -29.46 16 12 S 2.72 101.56 5.41 -56.49 -0.31 101.26 16 13 O -1.01 -43.42 17.26 -128.00 -2.21 -45.63 16 14 O -1.00 -41.04 16.59 -128.00 -2.12 -43.16 16 15 C -0.79 -33.86 5.08 22.46 0.11 -33.75 16 16 C 0.00 0.16 8.57 22.22 0.19 0.35 16 17 C -0.25 -11.74 9.80 22.73 0.22 -11.51 16 18 C 0.11 5.79 5.58 -21.29 -0.12 5.68 16 19 C -0.47 -22.95 9.05 23.46 0.21 -22.74 16 20 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 21 C 0.03 1.52 5.14 85.26 0.44 1.96 16 22 N -0.80 -39.17 10.95 21.83 0.24 -38.93 16 23 Si 0.99 34.38 29.59 68.60 2.03 36.41 16 24 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 25 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 26 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 27 C -0.21 -10.56 8.70 22.73 0.20 -10.36 16 28 C -0.02 -0.91 9.49 22.22 0.21 -0.70 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.33 6.18 -2.39 -0.01 1.31 16 31 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.09 1.03 7.98 -2.39 -0.02 1.01 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 0.86 7.86 -2.39 -0.02 0.84 16 35 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.76 6.91 -2.38 -0.02 1.75 16 39 H 0.08 1.49 7.50 -2.39 -0.02 1.47 16 40 H 0.42 8.99 7.77 -96.74 -0.75 8.24 16 41 H 0.12 4.68 7.59 -2.90 -0.02 4.66 16 42 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 43 H 0.30 12.95 8.30 -92.71 -0.77 12.18 16 44 H 0.11 5.68 6.15 -2.91 -0.02 5.67 16 45 H 0.11 4.82 7.60 -2.91 -0.02 4.80 16 Total: -1.00 -67.22 371.45 -0.86 -68.08 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: 0.25 Total: 37.55 kcal Atomic # 6 Polarization: -77.16 SS G_CDS: 3.55 Total: -73.60 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -0.34 Total: -68.39 kcal Atomic # 8 Polarization: -95.26 SS G_CDS: -6.05 Total: -101.31 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal Atomic # 16 Polarization: 101.56 SS G_CDS: -0.31 Total: 101.26 kcal Total: -67.22 -0.86 -68.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771621632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.410 kcal (2) G-P(sol) polarization free energy of solvation -67.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds